Obsolete: TNY
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C | O | doub | 1.21Å | 1.23Å | |
C | CA | sing | 1.51Å | 1.52Å | |
C | OXT | sing | 1.34Å | 1.43Å | |
N | CA | sing | 1.47Å | 1.47Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
C1 | C2 | sing | 1.53Å | 1.53Å | |
C1 | O5 | sing | 1.43Å | 1.44Å | |
C1 | OG1 | sing | 1.43Å | 1.44Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C2 | N2 | sing | 1.47Å | 1.45Å | |
C2 | C3 | sing | 1.53Å | 1.52Å | |
C2 | H9 | sing | 1.09Å | 1.10Å | |
N2 | C7 | sing | 1.35Å | 1.33Å | |
N2 | HN2 | sing | 0.97Å | 1.00Å | |
C3 | O3 | sing | 1.43Å | 1.43Å | |
C3 | C4 | sing | 1.53Å | 1.51Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C4 | O4 | sing | 1.43Å | 1.44Å | |
C4 | C5 | sing | 1.53Å | 1.53Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C5 | O5 | sing | 1.43Å | 1.45Å | |
C5 | C6 | sing | 1.53Å | 1.52Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
C6 | O6 | sing | 1.43Å | 1.43Å | |
C6 | H6 | sing | 1.09Å | 1.10Å | |
C6 | H6A | sing | 1.09Å | 1.10Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
C7 | O7 | doub | 1.21Å | 1.23Å | |
C7 | C8 | sing | 1.51Å | 1.52Å | |
C8 | H8 | sing | 1.09Å | 1.10Å | |
C8 | H8A | sing | 1.09Å | 1.10Å | |
C8 | H8B | sing | 1.09Å | 1.10Å | |
CA | CB | sing | 1.53Å | 1.54Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CB | OG1 | sing | 1.43Å | 1.45Å | |
CB | CG2 | sing | 1.53Å | 1.54Å | |
CB | HB | sing | 1.09Å | 1.10Å | |
CG2 | HG21 | sing | 1.09Å | 1.10Å | |
CG2 | HG22 | sing | 1.09Å | 1.10Å | |
CG2 | HG23 | sing | 1.09Å | 1.10Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O | C | CA | 120.4° | 120.0° |
O | C | OXT | 119.8° | 120.1° |
CA | C | OXT | 119.8° | 120.0° |
C | CA | N | 109.1° | 109.5° |
C | CA | CB | 112.0° | 109.5° |
C | CA | HA | 107.1° | 109.4° |
C | OXT | HXT | 109.5° | 117.0° |
CA | N | H | 109.5° | 111.0° |
CA | N | H2 | 109.5° | 111.0° |
N | CA | CB | 106.8° | 109.5° |
N | CA | HA | 112.4° | 109.4° |
H | N | H2 | 109.5° | 111.0° |
C2 | C1 | O5 | 109.5° | 109.4° |
C2 | C1 | OG1 | 108.5° | 109.5° |
C2 | C1 | H1 | 109.8° | 109.5° |
C1 | C2 | N2 | 108.9° | 109.6° |
C1 | C2 | C3 | 109.8° | 109.1° |
C1 | C2 | H9 | 109.3° | 109.5° |
O5 | C1 | OG1 | 108.8° | 109.5° |
O5 | C1 | H1 | 109.6° | 109.5° |
C1 | O5 | C5 | 111.3° | 114.1° |
OG1 | C1 | H1 | 110.5° | 109.4° |
C1 | OG1 | CB | 119.6° | 114.0° |
N2 | C2 | C3 | 108.4° | 109.5° |
N2 | C2 | H9 | 110.7° | 109.5° |
C2 | N2 | C7 | 118.5° | 120.0° |
C2 | N2 | HN2 | 120.8° | 119.9° |
C3 | C2 | H9 | 109.8° | 109.5° |
C2 | C3 | O3 | 110.1° | 109.5° |
C2 | C3 | C4 | 107.5° | 109.1° |
C2 | C3 | H3 | 110.9° | 109.5° |
C7 | N2 | HN2 | 120.8° | 120.1° |
N2 | C7 | O7 | 122.9° | 120.0° |
N2 | C7 | C8 | 115.3° | 120.0° |
O3 | C3 | C4 | 111.1° | 109.5° |
O3 | C3 | H3 | 107.3° | 109.5° |
C3 | O3 | HO3 | 109.5° | 113.9° |
C4 | C3 | H3 | 109.9° | 109.6° |
C3 | C4 | O4 | 109.1° | 109.5° |
C3 | C4 | C5 | 108.1° | 109.2° |
C3 | C4 | H4 | 110.9° | 109.5° |
O4 | C4 | C5 | 110.5° | 109.5° |
O4 | C4 | H4 | 108.6° | 109.5° |
C4 | O4 | HO4 | 109.5° | 114.0° |
C5 | C4 | H4 | 109.6° | 109.6° |
C4 | C5 | O5 | 112.1° | 109.4° |
C4 | C5 | C6 | 109.9° | 109.5° |
C4 | C5 | H5 | 107.4° | 109.4° |
O5 | C5 | C6 | 109.6° | 109.5° |
O5 | C5 | H5 | 107.7° | 109.5° |
C6 | C5 | H5 | 110.1° | 109.5° |
C5 | C6 | O6 | 110.1° | 109.5° |
C5 | C6 | H6 | 109.3° | 109.5° |
C5 | C6 | H6A | 109.2° | 109.5° |
O6 | C6 | H6 | 109.3° | 109.5° |
O6 | C6 | H6A | 109.2° | 109.5° |
C6 | O6 | HO6 | 109.5° | 114.0° |
H6 | C6 | H6A | 109.7° | 109.5° |
O7 | C7 | C8 | 121.8° | 120.0° |
C7 | C8 | H8 | 109.5° | 109.5° |
C7 | C8 | H8A | 109.5° | 109.5° |
C7 | C8 | H8B | 109.5° | 109.5° |
H8 | C8 | H8A | 109.4° | 109.5° |
H8 | C8 | H8B | 109.5° | 109.5° |
H8A | C8 | H8B | 109.5° | 109.4° |
CB | CA | HA | 109.5° | 109.5° |
CA | CB | OG1 | 115.8° | 109.4° |
CA | CB | CG2 | 111.5° | 109.4° |
CA | CB | HB | 102.7° | 109.5° |
OG1 | CB | CG2 | 106.8° | 109.5° |
OG1 | CB | HB | 107.8° | 109.5° |
CG2 | CB | HB | 112.4° | 109.5° |
CB | CG2 | HG21 | 109.5° | 109.5° |
CB | CG2 | HG22 | 109.5° | 109.4° |
CB | CG2 | HG23 | 109.5° | 109.5° |
HG21 | CG2 | HG22 | 109.5° | 109.5° |
HG21 | CG2 | HG23 | 109.4° | 109.5° |
HG22 | CG2 | HG23 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O | C | CA | OXT | 180.0° | 179.7° |
O | C | CA | N | 14.6° | 20.1° |
O | C | CA | CB | 103.5° | 100.0° |
O | C | CA | HA | 136.4° | 140.0° |
O | C | OXT | HXT | 0.0° | 0.1° |
C | CA | N | CB | 121.3° | 120.0° |
C | CA | N | HA | 118.6° | 120.0° |
C | CA | N | H | 180.0° | 63.9° |
C | CA | N | H2 | 60.0° | 60.0° |
C | CA | CB | HA | 118.7° | 120.0° |
C | CA | CB | OG1 | 58.1° | 55.1° |
C | CA | CB | CG2 | 179.6° | 175.0° |
C | CA | CB | HB | 59.1° | 65.0° |
CA | C | OXT | HXT | 180.0° | 179.7° |
OXT | C | CA | N | 165.5° | 160.3° |
OXT | C | CA | CB | 76.5° | 79.7° |
OXT | C | CA | HA | 43.6° | 40.3° |
CA | N | H | H2 | 120.0° | 123.9° |
N | CA | CB | HA | 121.9° | 120.0° |
N | CA | CB | OG1 | 61.3° | 65.0° |
N | CA | CB | CG2 | 61.0° | 55.0° |
N | CA | CB | HB | 178.5° | 175.0° |
H | N | CA | CB | 58.7° | 176.1° |
H | N | CA | HA | 61.4° | 56.1° |
H2 | N | CA | CB | 178.7° | 60.1° |
H2 | N | CA | HA | 58.7° | 179.9° |
C2 | C1 | O5 | OG1 | 118.5° | 120.0° |
C2 | C1 | O5 | H1 | 120.5° | 120.0° |
C2 | C1 | OG1 | H1 | 120.5° | 120.0° |
C1 | C2 | N2 | C3 | 119.4° | 119.7° |
C1 | C2 | N2 | H9 | 120.1° | 120.2° |
C1 | C2 | C3 | H9 | 120.2° | 119.9° |
C1 | C2 | N2 | C7 | 122.5° | 85.0° |
C1 | C2 | N2 | HN2 | 57.5° | 95.0° |
C1 | C2 | C3 | O3 | 177.9° | 176.8° |
C1 | C2 | C3 | C4 | 60.9° | 57.0° |
C1 | C2 | C3 | H3 | 59.2° | 63.1° |
C2 | C1 | O5 | C5 | 58.4° | 61.2° |
C2 | C1 | OG1 | CB | 171.1° | 170.0° |
O5 | C1 | OG1 | H1 | 120.4° | 120.0° |
O5 | C1 | C2 | N2 | 178.9° | 177.5° |
O5 | C1 | C2 | C3 | 60.4° | 57.6° |
O5 | C1 | C2 | H9 | 60.1° | 62.3° |
C1 | O5 | C5 | C4 | 58.8° | 61.1° |
C1 | O5 | C5 | C6 | 178.9° | 178.9° |
C1 | O5 | C5 | H5 | 59.2° | 58.8° |
O5 | C1 | OG1 | CB | 69.8° | 70.1° |
OG1 | C1 | C2 | N2 | 60.2° | 57.5° |
OG1 | C1 | C2 | C3 | 58.3° | 62.4° |
OG1 | C1 | C2 | H9 | 178.8° | 177.7° |
OG1 | C1 | O5 | C5 | 60.1° | 58.8° |
C1 | OG1 | CB | CA | 86.6° | 150.0° |
C1 | OG1 | CB | CG2 | 148.6° | 90.0° |
C1 | OG1 | CB | HB | 27.7° | 30.0° |
H1 | C1 | C2 | N2 | 60.7° | 62.5° |
H1 | C1 | C2 | C3 | 179.2° | 177.6° |
H1 | C1 | C2 | H9 | 60.3° | 57.7° |
H1 | C1 | O5 | C5 | 178.9° | 178.8° |
H1 | C1 | OG1 | CB | 50.6° | 49.9° |
N2 | C2 | C3 | H9 | 121.0° | 120.2° |
C2 | N2 | C7 | HN2 | 180.0° | 179.9° |
N2 | C2 | C3 | O3 | 59.0° | 63.2° |
N2 | C2 | C3 | C4 | 179.7° | 176.9° |
N2 | C2 | C3 | H3 | 59.6° | 56.9° |
C2 | N2 | C7 | O7 | 0.6° | 0.0° |
C2 | N2 | C7 | C8 | 179.8° | 180.0° |
C3 | C2 | N2 | C7 | 118.2° | 155.3° |
C3 | C2 | N2 | HN2 | 61.8° | 24.7° |
C2 | C3 | O3 | C4 | 119.0° | 119.6° |
C2 | C3 | O3 | H3 | 120.8° | 120.1° |
C2 | C3 | C4 | H3 | 120.8° | 119.9° |
C2 | C3 | O3 | HO3 | 180.0° | 179.9° |
C2 | C3 | C4 | O4 | 61.4° | 62.9° |
C2 | C3 | C4 | C5 | 58.8° | 57.0° |
C2 | C3 | C4 | H4 | 179.0° | 177.0° |
H9 | C2 | N2 | C7 | 2.3° | 35.2° |
H9 | C2 | N2 | HN2 | 177.7° | 144.9° |
H9 | C2 | C3 | O3 | 62.0° | 56.9° |
H9 | C2 | C3 | C4 | 59.2° | 62.9° |
H9 | C2 | C3 | H3 | 179.4° | 177.1° |
N2 | C7 | O7 | C8 | 179.6° | 180.0° |
N2 | C7 | C8 | H8 | 179.6° | 0.0° |
N2 | C7 | C8 | H8A | 60.4° | 120.0° |
N2 | C7 | C8 | H8B | 59.6° | 120.0° |
HN2 | N2 | C7 | O7 | 179.4° | 180.0° |
HN2 | N2 | C7 | C8 | 0.2° | 0.0° |
O3 | C3 | C4 | H3 | 118.6° | 120.2° |
O3 | C3 | C4 | O4 | 59.2° | 57.0° |
O3 | C3 | C4 | C5 | 179.4° | 176.8° |
O3 | C3 | C4 | H4 | 60.4° | 63.2° |
C4 | C3 | O3 | HO3 | 60.9° | 60.5° |
C3 | C4 | O4 | C5 | 118.7° | 119.7° |
C3 | C4 | O4 | H4 | 121.0° | 120.1° |
C3 | C4 | C5 | H4 | 121.0° | 120.0° |
C3 | C4 | O4 | HO4 | 180.0° | 180.0° |
C3 | C4 | C5 | O5 | 58.7° | 57.6° |
C3 | C4 | C5 | C6 | 179.2° | 177.6° |
C3 | C4 | C5 | H5 | 59.5° | 62.4° |
H3 | C3 | O3 | HO3 | 59.2° | 59.8° |
H3 | C3 | C4 | O4 | 177.8° | 177.2° |
H3 | C3 | C4 | C5 | 62.0° | 63.0° |
H3 | C3 | C4 | H4 | 58.2° | 57.0° |
O4 | C4 | C5 | H4 | 119.6° | 120.2° |
O4 | C4 | C5 | O5 | 60.7° | 62.3° |
O4 | C4 | C5 | C6 | 61.4° | 57.7° |
O4 | C4 | C5 | H5 | 178.8° | 177.7° |
C5 | C4 | O4 | HO4 | 61.3° | 60.3° |
C4 | C5 | O5 | C6 | 122.3° | 120.0° |
C4 | C5 | O5 | H5 | 118.0° | 119.9° |
C4 | C5 | C6 | H5 | 118.1° | 120.0° |
C4 | C5 | C6 | O6 | 59.7° | 175.0° |
C4 | C5 | C6 | H6 | 60.3° | 55.0° |
C4 | C5 | C6 | H6A | 179.7° | 65.0° |
H4 | C4 | O4 | HO4 | 59.0° | 59.9° |
H4 | C4 | C5 | O5 | 179.7° | 177.5° |
H4 | C4 | C5 | C6 | 58.2° | 62.5° |
H4 | C4 | C5 | H5 | 61.5° | 57.6° |
O5 | C5 | C6 | H5 | 118.3° | 120.1° |
O5 | C5 | C6 | O6 | 176.7° | 65.1° |
O5 | C5 | C6 | H6 | 63.3° | 174.9° |
O5 | C5 | C6 | H6A | 56.7° | 54.9° |
C5 | C6 | O6 | H6 | 120.0° | 120.0° |
C5 | C6 | O6 | H6A | 120.0° | 120.0° |
C5 | C6 | H6 | H6A | 119.7° | 120.0° |
C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
H5 | C5 | C6 | O6 | 58.4° | 55.0° |
H5 | C5 | C6 | H6 | 178.4° | 65.0° |
H5 | C5 | C6 | H6A | 61.6° | 175.0° |
O6 | C6 | H6 | H6A | 119.7° | 120.0° |
H6 | C6 | O6 | HO6 | 60.0° | 60.0° |
H6A | C6 | O6 | HO6 | 60.0° | 60.0° |
O7 | C7 | C8 | H8 | 0.0° | 180.0° |
O7 | C7 | C8 | H8A | 120.0° | 60.0° |
O7 | C7 | C8 | H8B | 120.0° | 60.0° |
C7 | C8 | H8 | H8A | 120.0° | 120.0° |
C7 | C8 | H8 | H8B | 120.0° | 120.0° |
C7 | C8 | H8A | H8B | 120.0° | 120.0° |
H8 | C8 | H8A | H8B | 120.0° | 120.0° |
CA | CB | OG1 | CG2 | 124.7° | 119.9° |
CA | CB | OG1 | HB | 114.3° | 120.0° |
CA | CB | CG2 | HB | 114.7° | 120.0° |
CA | CB | CG2 | HG21 | 180.0° | 60.0° |
CA | CB | CG2 | HG22 | 60.0° | 179.9° |
CA | CB | CG2 | HG23 | 60.0° | 60.0° |
HA | CA | CB | OG1 | 176.8° | 175.0° |
HA | CA | CB | CG2 | 60.9° | 65.0° |
HA | CA | CB | HB | 59.6° | 55.0° |
OG1 | CB | CG2 | HB | 118.0° | 120.0° |
OG1 | CB | CG2 | HG21 | 52.7° | 60.0° |
OG1 | CB | CG2 | HG22 | 172.7° | 60.0° |
OG1 | CB | CG2 | HG23 | 67.3° | 180.0° |
CB | CG2 | HG21 | HG22 | 120.0° | 119.9° |
CB | CG2 | HG21 | HG23 | 120.0° | 120.0° |
CB | CG2 | HG22 | HG23 | 120.0° | 120.0° |
HB | CB | CG2 | HG21 | 65.3° | 180.0° |
HB | CB | CG2 | HG22 | 54.7° | 60.1° |
HB | CB | CG2 | HG23 | 174.7° | 59.9° |
HG21 | CG2 | HG22 | HG23 | 120.0° | 120.0° |