English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

TNL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C7	sing	1.51Å	1.50Å
C1	C2	doub	1.40Å	1.42Å	Aromatic
C1	C6	sing	1.40Å	1.37Å	Aromatic
C7	H7C1	sing	1.09Å	1.12Å
C7	H7C2	sing	1.09Å	1.11Å
C7	H7C3	sing	1.09Å	1.11Å
C2	N2	sing	1.35Å	1.46Å
C2	C3	sing	1.40Å	1.36Å	Aromatic
N2	O21	doub	1.22Å	1.25Å
N2	O22	sing	1.22Å	1.19Å
C3	C4	doub	1.40Å	1.37Å	Aromatic
C3	H3	sing	1.08Å	1.10Å
C4	N4	sing	1.35Å	1.45Å
C4	C5	sing	1.40Å	1.37Å	Aromatic
N4	O41	doub	1.22Å	1.22Å
N4	O42	sing	1.22Å	1.21Å
C5	C6	doub	1.40Å	1.38Å	Aromatic
C5	H5	sing	1.08Å	1.10Å
C6	N6	sing	1.35Å	1.48Å
N6	O61	doub	1.22Å	1.21Å
N6	O62	sing	1.22Å	1.22Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C7	C1	C2	119.8°	120.0°
C7	C1	C6	125.4°	120.0°
C1	C7	H7C1	119.8°	109.5°
C1	C7	H7C2	108.5°	109.5°
C1	C7	H7C3	108.5°	109.5°
C2	C1	C6	114.8°	120.0°
C1	C2	N2	118.7°	120.0°
C1	C2	C3	125.0°	120.0°
C1	C6	C5	123.2°	120.0°
C1	C6	N6	120.9°	120.0°
H7C1	C7	H7C2	108.5°	109.5°
H7C1	C7	H7C3	108.5°	109.5°
H7C2	C7	H7C3	101.5°	109.4°
N2	C2	C3	116.3°	120.0°
C2	N2	O21	119.9°	120.0°
C2	N2	O22	119.0°	120.0°
C2	C3	C4	115.2°	120.0°
C2	C3	H3	122.4°	120.0°
O21	N2	O22	121.1°	120.0°
C4	C3	H3	122.4°	120.0°
C3	C4	N4	116.1°	120.0°
C3	C4	C5	124.8°	120.0°
N4	C4	C5	119.1°	120.0°
C4	N4	O41	115.5°	120.0°
C4	N4	O42	118.9°	120.0°
C4	C5	C6	116.9°	120.0°
C4	C5	H5	121.5°	120.0°
O41	N4	O42	125.4°	119.9°
C6	C5	H5	121.5°	120.0°
C5	C6	N6	115.9°	120.0°
C6	N6	O61	118.0°	120.0°
C6	N6	O62	118.7°	120.0°
O61	N6	O62	123.3°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C7	C1	C2	C6	178.8°	179.8°
C1	C7	H7C1	H7C2	125.2°	120.0°
C1	C7	H7C1	H7C3	125.2°	120.0°
C1	C7	H7C2	H7C3	114.2°	120.0°
C7	C1	C2	N2	3.1°	0.0°
C7	C1	C2	C3	178.1°	179.9°
C7	C1	C6	C5	179.8°	179.8°
C7	C1	C6	N6	0.6°	0.3°
C2	C1	C7	H7C1	180.0°	89.7°
C2	C1	C7	H7C2	54.8°	150.2°
C2	C1	C7	H7C3	54.7°	30.3°
C1	C2	N2	C3	178.9°	180.0°
C1	C2	N2	O21	125.3°	149.0°
C1	C2	N2	O22	53.4°	31.0°
C1	C2	C3	C4	2.1°	0.0°
C1	C2	C3	H3	177.9°	180.0°
C2	C1	C6	C5	1.6°	0.5°
C2	C1	C6	N6	178.1°	180.0°
C6	C1	C7	H7C1	1.4°	90.5°
C6	C1	C7	H7C2	123.9°	29.5°
C6	C1	C7	H7C3	126.7°	149.5°
C6	C1	C2	N2	178.1°	179.8°
C6	C1	C2	C3	0.6°	0.2°
C1	C6	C5	C4	2.0°	0.5°
C1	C6	C5	N6	179.7°	179.5°
C1	C6	C5	H5	177.9°	179.7°
C1	C6	N6	O61	132.1°	149.0°
C1	C6	N6	O62	47.3°	30.9°
H7C1	C7	H7C2	H7C3	114.2°	119.9°
C2	N2	O21	O22	178.6°	179.9°
N2	C2	C3	C4	176.7°	180.0°
N2	C2	C3	H3	3.4°	0.0°
C3	C2	N2	O21	55.9°	31.0°
C3	C2	N2	O22	125.5°	149.0°
C2	C3	C4	H3	180.0°	179.9°
C2	C3	C4	N4	178.2°	179.9°
C2	C3	C4	C5	1.6°	0.0°
C3	C4	N4	C5	179.8°	179.9°
C3	C4	N4	O41	159.3°	180.0°
C3	C4	N4	O42	23.6°	0.0°
C3	C4	C5	C6	0.3°	0.3°
C3	C4	C5	H5	179.6°	180.0°
H3	C3	C4	N4	1.8°	0.0°
H3	C3	C4	C5	178.4°	179.9°
C4	N4	O41	O42	176.9°	180.0°
N4	C4	C5	C6	179.9°	179.8°
N4	C4	C5	H5	0.2°	0.0°
C5	C4	N4	O41	20.5°	0.0°
C5	C4	N4	O42	156.5°	179.9°
C4	C5	C6	H5	180.0°	179.8°
C4	C5	C6	N6	177.6°	180.0°
C5	C6	N6	O61	47.6°	31.5°
C5	C6	N6	O62	133.0°	148.6°
H5	C5	C6	N6	2.4°	0.2°
C6	N6	O61	O62	179.4°	179.9°

218853

PDB entries from 2024-04-24

PDB statistics

PDBj update info

Contact PDBj

numon