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TND

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5'C4'sing1.53Å1.54Å
C5'O5'sing1.43Å1.44Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.53Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.45Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.53Å
C3'H3'sing1.09Å1.12Å
O3'HO3'sing0.97Å0.95Å
C2'N2'sing1.47Å1.46Å
C2'C1'sing1.55Å1.54Å
C2'H2'sing1.09Å1.12Å
N2'C7Bsing1.35Å1.37Å
N2'HN2'sing0.97Å1.02Å
C1'N9Asing1.46Å1.47Å
C1'H1'sing1.09Å1.11Å
N9AC8Asing1.36Å1.38ÅAromatic
N9AC4Asing1.37Å1.39ÅAromatic
C8AN7Adoub1.30Å1.32ÅAromatic
C8AH8Asing1.08Å1.10Å
N7AC5Asing1.35Å1.39ÅAromatic
C5AC6Adoub1.41Å1.46ÅAromatic
C5AC4Asing1.40Å1.40ÅAromatic
C6AN6Asing1.38Å1.37Å
C6AN1Asing1.33Å1.38ÅAromatic
N6AC1sing1.47Å1.48Å
N6AH6Asing0.97Å1.02Å
N1AC2Adoub1.32Å1.36ÅAromatic
C2AN3Asing1.32Å1.35ÅAromatic
C2AH2Asing1.08Å1.10Å
N3AC4Adoub1.33Å1.37ÅAromatic
C1C9sing1.51Å1.54Å
C1C2sing1.53Å1.56Å
C1H1sing1.09Å1.11Å
C9C8sing1.39Å1.51ÅAromatic
C9C10doub1.38Å1.50ÅAromatic
C8C7doub1.38Å1.50ÅAromatic
C8H8sing1.08Å1.10Å
C7C6sing1.38Å1.50ÅAromatic
C7H7sing1.08Å1.10Å
C6C5doub1.38Å1.51ÅAromatic
C6H6sing1.08Å1.10Å
C2C3sing1.53Å1.58Å
C2H21sing1.09Å1.12Å
C2H22sing1.09Å1.12Å
C10C5sing1.39Å1.51ÅAromatic
C10C4sing1.51Å1.54Å
C5H5sing1.08Å1.10Å
C3C4sing1.53Å1.56Å
C3H31sing1.09Å1.11Å
C3H32sing1.09Å1.12Å
C4H41sing1.09Å1.12Å
C4H42sing1.09Å1.12Å
C7BO7Bdoub1.22Å1.24Å
C7BC6Bsing1.48Å1.49Å
C6BC5Bdoub1.39Å1.44ÅAromatic
C6BC1Bsing1.40Å1.44ÅAromatic
C5BC4Bsing1.39Å1.45ÅAromatic
C5BH5Bsing1.08Å1.10Å
C4BO2Msing1.36Å1.40Å
C4BC3Bdoub1.39Å1.44ÅAromatic
O2MC2Msing1.43Å1.44Å
C2MH2M1sing1.09Å1.11Å
C2MH2M2sing1.09Å1.12Å
C2MH2M3sing1.09Å1.12Å
C3BC2Bsing1.39Å1.45ÅAromatic
C3BH3Bsing1.08Å1.10Å
C1BC2Bdoub1.39Å1.43ÅAromatic
C1BH1Bsing1.08Å1.10Å
C2BO1Msing1.36Å1.39Å
O1MC1Msing1.43Å1.44Å
C1MH1M1sing1.09Å1.12Å
C1MH1M2sing1.09Å1.12Å
C1MH1M3sing1.09Å1.11Å
O5'HO5'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4'C5'O5'110.4°109.5°
C4'C5'H5'1111.9°109.5°
C4'C5'H5'2111.9°109.4°
C5'C4'O4'112.9°110.0°
C5'C4'C3'113.7°109.9°
C5'C4'H4'103.0°109.9°
O5'C5'H5'1111.8°109.5°
O5'C5'H5'2111.8°109.5°
C5'O5'HO5'110.4°106.8°
H5'1C5'H5'298.5°109.4°
O4'C4'C3'106.2°107.3°
O4'C4'H4'111.0°109.9°
C4'O4'C1'109.9°107.1°
C3'C4'H4'110.1°109.8°
C4'C3'O3'112.4°110.7°
C4'C3'C2'101.7°104.2°
C4'C3'H3'114.9°110.4°
O4'C1'C2'105.0°103.4°
O4'C1'N9A110.5°110.6°
O4'C1'H1'114.0°110.6°
O3'C3'C2'115.3°110.5°
O3'C3'H3'101.1°110.4°
C3'O3'HO3'112.4°106.7°
C2'C3'H3'112.0°110.5°
C3'C2'N2'116.4°111.0°
C3'C2'C1'102.3°102.2°
C3'C2'H2'111.9°110.9°
N2'C2'C1'115.0°110.9°
N2'C2'H2'98.3°110.7°
C2'N2'C7B123.8°120.1°
C2'N2'HN2'121.7°119.9°
C1'C2'H2'113.5°110.9°
C2'C1'N9A115.6°110.8°
C2'C1'H1'108.8°110.6°
C7BN2'HN2'114.6°120.0°
N2'C7BO7B121.3°120.0°
N2'C7BC6B118.9°120.0°
N9AC1'H1'103.1°110.6°
C1'N9AC8A128.6°126.3°
C1'N9AC4A126.1°126.3°
C8AN9AC4A105.3°107.4°
N9AC8AN7A114.4°110.0°
N9AC8AH8A124.8°125.0°
N9AC4AC5A105.6°106.0°
N9AC4AN3A127.6°134.9°
N7AC8AH8A120.8°125.0°
C8AN7AC5A104.3°109.4°
N7AC5AC6A133.3°134.7°
N7AC5AC4A110.4°107.2°
C6AC5AC4A116.3°118.2°
C5AC6AN6A125.3°120.7°
C5AC6AN1A117.4°118.5°
C5AC4AN3A126.7°119.1°
N6AC6AN1A117.3°120.8°
C6AN6AC1126.3°119.9°
C6AN6AH6A106.3°120.0°
C6AN1AC2A119.4°121.2°
C1N6AH6A106.3°120.0°
N6AC1C9113.4°109.3°
N6AC1C2110.7°109.2°
N6AC1H1107.0°109.3°
N1AC2AN3A128.1°122.4°
N1AC2AH2A116.2°118.8°
N3AC2AH2A115.7°118.8°
C2AN3AC4A112.1°120.6°
C9C1C2112.5°110.5°
C9C1H1105.0°109.3°
C1C9C8121.9°117.7°
C1C9C10117.8°122.6°
C2C1H1107.9°109.2°
C1C2C3116.2°108.4°
C1C2H21109.8°109.7°
C1C2H22109.8°109.7°
C8C9C10120.3°119.7°
C9C8C7119.3°120.5°
C9C8H8120.5°119.8°
C9C10C5120.3°119.7°
C9C10C4118.8°122.6°
C7C8H8120.1°119.7°
C8C7C6120.4°119.8°
C8C7H7119.7°120.1°
C6C7H7119.9°120.1°
C7C6C5120.5°119.8°
C7C6H6119.7°120.2°
C5C6H6119.8°120.1°
C6C5C10119.2°120.5°
C6C5H5120.4°119.7°
C3C2H21109.8°109.7°
C3C2H22109.8°109.7°
C2C3C4116.4°108.4°
C2C3H31109.7°109.7°
C2C3H32109.7°109.7°
H21C2H22100.4°109.7°
C5C10C4120.9°117.7°
C10C5H5120.4°119.7°
C10C4C3111.8°110.6°
C10C4H41111.4°109.2°
C10C4H42111.4°109.2°
C4C3H31109.7°109.7°
C4C3H32109.7°109.7°
C3C4H41111.3°109.3°
C3C4H42111.3°109.3°
H31C3H32100.4°109.7°
H41C4H4299.0°109.2°
O7BC7BC6B119.7°120.0°
C7BC6BC5B119.8°120.1°
C7BC6BC1B120.2°120.1°
C5BC6BC1B119.9°119.8°
C6BC5BC4B120.9°119.9°
C6BC5BH5B119.1°120.1°
C6BC1BC2B120.5°119.9°
C6BC1BH1B120.0°120.0°
C4BC5BH5B120.0°120.0°
C5BC4BO2M119.9°120.0°
C5BC4BC3B118.2°120.1°
O2MC4BC3B121.9°119.9°
C4BO2MC2M121.0°106.8°
C4BC3BC2B121.7°120.2°
C4BC3BH3B118.6°119.9°
O2MC2MH2M1121.0°109.5°
O2MC2MH2M2108.1°109.5°
O2MC2MH2M3108.1°109.5°
H2M1C2MH2M2108.1°109.4°
H2M1C2MH2M3108.1°109.5°
H2M2C2MH2M3101.7°109.5°
C2BC3BH3B119.7°119.9°
C3BC2BC1B118.8°120.1°
C3BC2BO1M124.6°119.9°
C2BC1BH1B119.5°120.1°
C1BC2BO1M116.7°120.0°
C2BO1MC1M120.3°106.8°
O1MC1MH1M1120.2°109.4°
O1MC1MH1M2108.3°109.5°
O1MC1MH1M3108.3°109.4°
H1M1C1MH1M2108.4°109.5°
H1M1C1MH1M3108.4°109.5°
H1M2C1MH1M3101.7°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4'C5'O5'H5'1125.3°120.1°
C4'C5'O5'H5'2125.3°120.0°
C4'C5'H5'1H5'2117.8°119.9°
C5'C4'O4'C3'125.2°119.5°
C5'C4'O4'H4'115.1°121.1°
C5'C4'C3'H4'115.0°121.0°
C5'C4'O4'C1'113.3°146.0°
C5'C4'C3'O3'142.8°119.6°
C5'C4'C3'C2'93.4°121.6°
C5'C4'C3'H3'27.8°3.0°
C4'C5'O5'HO5'179.9°180.0°
O5'C5'H5'1H5'2117.7°120.0°
O5'C5'C4'O4'165.5°62.1°
O5'C5'C4'C3'44.4°180.0°
O5'C5'C4'H4'74.7°59.1°
H5'1C5'C4'O4'40.2°177.9°
H5'1C5'C4'C3'80.9°59.9°
H5'1C5'C4'H4'160.0°61.0°
H5'1C5'O5'HO5'54.7°59.9°
H5'2C5'C4'O4'69.3°57.9°
H5'2C5'C4'C3'169.7°60.0°
H5'2C5'C4'H4'50.5°179.1°
H5'2C5'O5'HO5'54.7°60.0°
O4'C4'C3'H4'120.3°119.4°
O4'C4'C3'O3'92.5°120.8°
O4'C4'C3'C2'31.3°2.0°
O4'C4'C3'H3'152.5°116.6°
C4'O4'C1'C2'12.6°40.0°
C4'O4'C1'N9A137.9°158.7°
C4'O4'C1'H1'106.5°78.4°
C3'C4'O4'C1'11.9°26.5°
C4'C3'O3'C2'115.9°114.9°
C4'C3'O3'H3'123.0°122.6°
C4'C3'C2'H3'123.2°118.6°
C4'C3'O3'HO3'180.0°65.1°
C4'C3'C2'N2'164.1°139.2°
C4'C3'C2'C1'37.9°20.9°
C4'C3'C2'H2'83.9°97.3°
H4'C4'O4'C1'131.7°92.9°
H4'C4'C3'O3'27.7°1.4°
H4'C4'C3'C2'151.6°117.4°
H4'C4'C3'H3'87.2°123.9°
O4'C1'C2'C3'31.7°36.9°
O4'C1'C2'N2'158.9°155.3°
O4'C1'C2'N9A122.2°118.6°
O4'C1'C2'H1'122.4°118.4°
O4'C1'C2'H2'89.0°81.3°
O4'C1'N9AH1'122.2°122.9°
O4'C1'N9AC8A95.3°28.5°
O4'C1'N9AC4A84.5°151.8°
O3'C3'C2'H3'114.9°122.5°
O3'C3'C2'N2'42.2°20.3°
O3'C3'C2'C1'84.0°98.0°
O3'C3'C2'H2'154.2°143.8°
C2'C3'O3'HO3'64.1°180.0°
C3'C2'N2'C1'119.6°112.8°
C3'C2'N2'H2'119.6°123.6°
C3'C2'C1'H2'120.7°118.2°
C3'C2'N2'C7B106.3°94.3°
C3'C2'N2'HN2'73.7°85.6°
C3'C2'C1'N9A153.9°155.5°
C3'C2'C1'H1'90.7°81.5°
H3'C3'O3'HO3'56.9°57.5°
H3'C3'C2'N2'72.8°102.2°
H3'C3'C2'C1'161.0°139.5°
H3'C3'C2'H2'39.2°21.3°
N2'C2'C1'H2'112.1°123.5°
C2'N2'C7BHN2'180.0°180.0°
N2'C2'C1'N9A78.9°86.1°
N2'C2'C1'H1'36.5°36.8°
C2'N2'C7BO7B0.5°0.0°
C2'N2'C7BC6B176.9°179.9°
C1'C2'N2'C7B134.1°152.9°
C1'C2'N2'HN2'45.9°27.2°
C2'C1'N9AH1'118.6°123.0°
C2'C1'N9AC8A23.9°85.6°
C2'C1'N9AC4A156.3°94.1°
H2'C2'N2'C7B13.3°29.3°
H2'C2'N2'HN2'166.7°150.7°
H2'C2'C1'N9A33.2°37.3°
H2'C2'C1'H1'148.6°160.3°
N2'C7BO7BC6B177.4°179.9°
N2'C7BC6BC5B23.9°0.3°
N2'C7BC6BC1B156.1°180.0°
HN2'N2'C7BO7B179.5°180.0°
HN2'N2'C7BC6B3.1°0.0°
C1'N9AC8AC4A179.8°179.8°
C1'N9AC8AN7A179.9°180.0°
C1'N9AC8AH8A0.0°0.0°
C1'N9AC4AC5A179.8°179.8°
C1'N9AC4AN3A0.1°0.7°
H1'C1'N9AC8A142.5°151.4°
H1'C1'N9AC4A37.7°28.9°
N9AC8AN7AH8A179.9°179.9°
N9AC8AN7AC5A0.1°0.1°
C8AN9AC4AC5A0.0°0.4°
C8AN9AC4AN3A179.9°179.5°
C4AN9AC8AN7A0.1°0.2°
C4AN9AC8AH8A179.9°179.7°
N9AC4AC5AN7A0.1°0.4°
N9AC4AC5AC6A179.9°179.8°
N9AC4AC5AN3A179.9°179.3°
N9AC4AN3AC2A179.8°179.5°
C8AN7AC5AC6A179.8°179.9°
C8AN7AC5AC4A0.1°0.3°
H8AC8AN7AC5A179.8°180.0°
N7AC5AC6AC4A180.0°179.7°
N7AC5AC6AN6A0.0°0.1°
N7AC5AC6AN1A179.9°179.9°
N7AC5AC4AN3A180.0°179.7°
C5AC6AN6AN1A179.9°179.9°
C5AC6AN6AC17.7°180.0°
C5AC6AN6AH6A117.5°0.1°
C5AC6AN1AC2A0.1°0.1°
C6AC5AC4AN3A0.0°0.5°
C4AC5AC6AN6A180.0°179.7°
C4AC5AC6AN1A0.1°0.2°
C5AC4AN3AC2A0.1°0.5°
C6AN6AC1H6A125.2°180.0°
N6AC6AN1AC2A179.9°180.0°
C6AN6AC1C9125.8°89.5°
C6AN6AC1C2106.7°149.5°
C6AN6AC1H110.6°30.1°
N1AC6AN6AC1172.3°0.1°
N1AC6AN6AH6A62.5°179.9°
C6AN1AC2AN3A0.0°0.1°
C6AN1AC2AH2A180.0°179.9°
N6AC1C9C2126.5°120.2°
N6AC1C9H1116.4°119.6°
N6AC1C2H1116.7°119.5°
N6AC1C9C813.1°42.4°
N6AC1C9C10166.8°138.0°
N6AC1C2C3166.9°171.4°
N6AC1C2H2141.6°51.6°
N6AC1C2H2267.9°68.9°
H6AN6AC1C9109.0°90.4°
H6AN6AC1C218.5°30.5°
H6AN6AC1H1135.8°150.0°
N1AC2AN3AH2A180.0°179.9°
N1AC2AN3AC4A0.1°0.2°
H2AC2AN3AC4A179.9°179.7°
C9C1C2H1115.3°120.3°
C1C9C8C10179.9°179.6°
C1C9C8C7180.0°179.6°
C1C9C8H80.0°0.5°
C9C1C2C338.9°51.1°
C9C1C2H2186.3°68.6°
C9C1C2H22164.2°170.9°
C1C9C10C5180.0°179.5°
C1C9C10C40.1°0.7°
C2C1C9C8139.6°162.6°
C2C1C9C1040.3°17.8°
C1C2C3H21125.3°119.7°
C1C2C3H22125.3°119.7°
C1C2H21H22115.6°120.5°
C1C2C3C40.9°69.9°
C1C2C3H31124.4°170.4°
C1C2C3H32126.2°49.8°
H1C1C9C8103.3°77.2°
H1C1C9C1076.8°102.4°
H1C1C2C376.4°69.1°
H1C1C2H21158.4°171.1°
H1C1C2H2248.9°50.6°
C9C8C7H8180.0°179.9°
C9C8C7C60.0°0.1°
C9C8C7H7180.0°179.8°
C8C9C10C50.1°0.1°
C8C9C10C4179.8°179.8°
C10C9C8C70.1°0.0°
C10C9C8H8179.9°180.0°
C9C10C5C60.1°0.1°
C9C10C5C4180.0°179.9°
C9C10C5H5179.9°179.9°
C9C10C4C340.3°17.7°
C9C10C4H4184.9°102.6°
C9C10C4H42165.6°138.0°
C8C7C6H7180.0°180.0°
C8C7C6C50.1°0.1°
C8C7C6H6180.0°179.9°
H8C8C7C6180.0°179.9°
H8C8C7H70.0°0.1°
C7C6C5H6180.0°180.0°
C7C6C5C100.0°0.0°
C7C6C5H5180.0°180.0°
H7C7C6C5179.9°179.9°
H7C7C6H60.1°0.1°
C6C5C10H5180.0°179.9°
C6C5C10C4179.9°179.7°
H6C6C5C10180.0°179.9°
H6C6C5H50.0°0.0°
C3C2H21H22115.6°120.6°
C2C3C4C1039.9°51.1°
C2C3C4H31125.3°119.7°
C2C3C4H32125.3°119.7°
C2C3H31H32115.4°120.5°
C2C3C4H4185.4°69.2°
C2C3C4H42165.2°171.3°
H21C2C3C4126.2°49.8°
H21C2C3H310.9°69.9°
H21C2C3H32108.5°169.5°
H22C2C3C4124.3°170.4°
H22C2C3H31110.4°50.7°
H22C2C3H320.9°69.9°
C5C10C4C3139.6°162.4°
C5C10C4H4195.1°77.3°
C5C10C4H4214.4°42.1°
C4C10C5H50.1°0.2°
C10C4C3H41125.3°120.3°
C10C4C3H42125.3°120.3°
C10C4C3H3185.4°170.8°
C10C4C3H32165.2°68.7°
C10C4H41H42117.3°119.4°
C4C3H31H32115.5°120.5°
C3C4H41H42117.2°119.5°
H31C3C4H41149.3°50.5°
H31C3C4H4239.9°68.9°
H32C3C4H4139.9°171.1°
H32C3C4H4269.5°51.6°
O7BC7BC6BC5B158.7°179.7°
O7BC7BC6BC1B21.4°0.1°
C7BC6BC5BC1B180.0°179.7°
C7BC6BC5BC4B179.9°179.8°
C7BC6BC5BH5B0.0°0.3°
C7BC6BC1BC2B179.8°180.0°
C7BC6BC1BH1B0.2°0.1°
C6BC5BC4BH5B180.0°179.5°
C6BC5BC4BO2M179.7°179.7°
C6BC5BC4BC3B0.2°0.5°
C5BC6BC1BC2B0.2°0.3°
C5BC6BC1BH1B179.8°179.8°
C1BC6BC5BC4B0.0°0.5°
C1BC6BC5BH5B180.0°180.0°
C6BC1BC2BC3B0.2°0.1°
C6BC1BC2BH1B180.0°179.9°
C6BC1BC2BO1M179.8°180.0°
C5BC4BO2MC3B179.9°179.8°
C5BC4BO2MC2M0.5°179.7°
C5BC4BC3BC2B0.1°0.2°
C5BC4BC3BH3B179.9°179.8°
H5BC5BC4BO2M0.3°0.3°
H5BC5BC4BC3B179.8°179.9°
C4BO2MC2MH2M1180.0°179.9°
C4BO2MC2MH2M254.7°60.0°
C4BO2MC2MH2M354.7°60.0°
O2MC4BC3BC2B179.7°180.0°
O2MC4BC3BH3B0.3°0.0°
C3BC4BO2MC2M179.6°0.0°
C4BC3BC2BH3B180.0°180.0°
C4BC3BC2BC1B0.0°0.0°
C4BC3BC2BO1M180.0°179.9°
O2MC2MH2M1H2M2125.3°119.9°
O2MC2MH2M1H2M3125.3°120.1°
O2MC2MH2M2H2M3113.7°120.0°
H2M1C2MH2M2H2M3113.7°120.0°
C3BC2BC1BO1M180.0°179.9°
C3BC2BC1BH1B179.8°180.0°
C3BC2BO1MC1M6.3°0.1°
H3BC3BC2BC1B180.0°180.0°
H3BC3BC2BO1M0.0°0.1°
C1BC2BO1MC1M173.7°180.0°
H1BC1BC2BO1M0.1°0.1°
C2BO1MC1MH1M1180.0°180.0°
C2BO1MC1MH1M254.7°59.9°
C2BO1MC1MH1M354.7°60.0°
O1MC1MH1M1H1M2125.2°120.0°
O1MC1MH1M1H1M3125.2°119.9°
O1MC1MH1M2H1M3113.9°119.9°
H1M1C1MH1M2H1M3114.1°120.1°

224572

PDB entries from 2024-09-04

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