TMP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.53Å | |
| P | O2P | sing | 1.61Å | 1.64Å | |
| P | O3P | sing | 1.61Å | 1.56Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.45Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C1' | N1 | sing | 1.47Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.35Å | |
| N1 | C6 | sing | 1.37Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.26Å | |
| C2 | N3 | sing | 1.35Å | 1.33Å | |
| N3 | C4 | sing | 1.35Å | 1.33Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| C4 | C5 | sing | 1.42Å | 1.46Å | |
| C5 | C5M | sing | 1.51Å | 1.51Å | |
| C5 | C6 | doub | 1.35Å | 1.37Å | |
| C5M | H51 | sing | 1.09Å | 1.10Å | |
| C5M | H52 | sing | 1.09Å | 1.10Å | |
| C5M | H53 | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 112.9° | 109.5° |
| O1P | P | O3P | 111.1° | 109.5° |
| O1P | P | O5' | 108.0° | 109.5° |
| O2P | P | O3P | 116.3° | 109.5° |
| O2P | P | O5' | 101.9° | 109.4° |
| P | O2P | HOP2 | 109.5° | 106.8° |
| O3P | P | O5' | 105.6° | 109.4° |
| P | O3P | HOP3 | 109.5° | 106.8° |
| P | O5' | C5' | 122.9° | 106.8° |
| O5' | C5' | C4' | 111.2° | 109.5° |
| O5' | C5' | H5'1 | 108.9° | 109.4° |
| O5' | C5' | H5'2 | 108.5° | 109.5° |
| C4' | C5' | H5'1 | 108.9° | 109.5° |
| C4' | C5' | H5'2 | 108.5° | 109.5° |
| C5' | C4' | O4' | 106.3° | 110.8° |
| C5' | C4' | C3' | 113.0° | 110.6° |
| C5' | C4' | H4' | 109.2° | 110.5° |
| H5'1 | C5' | H5'2 | 110.8° | 109.5° |
| O4' | C4' | C3' | 109.1° | 103.6° |
| O4' | C4' | H4' | 113.1° | 110.5° |
| C4' | O4' | C1' | 107.4° | 106.8° |
| C3' | C4' | H4' | 106.4° | 110.6° |
| C4' | C3' | O3' | 110.1° | 110.9° |
| C4' | C3' | C2' | 104.3° | 102.1° |
| C4' | C3' | H3' | 111.7° | 110.9° |
| O4' | C1' | C2' | 110.1° | 107.4° |
| O4' | C1' | N1 | 107.7° | 109.9° |
| O4' | C1' | H1' | 111.4° | 109.8° |
| O3' | C3' | C2' | 107.3° | 110.9° |
| O3' | C3' | H3' | 108.9° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| C2' | C3' | H3' | 114.3° | 110.9° |
| C3' | C2' | C1' | 100.9° | 104.2° |
| C3' | C2' | H2'1 | 112.4° | 110.5° |
| C3' | C2' | H2'2 | 114.2° | 110.4° |
| C1' | C2' | H2'1 | 112.4° | 110.5° |
| C1' | C2' | H2'2 | 114.3° | 110.5° |
| C2' | C1' | N1 | 112.5° | 109.9° |
| C2' | C1' | H1' | 106.4° | 109.9° |
| H2'1 | C2' | H2'2 | 103.1° | 110.5° |
| N1 | C1' | H1' | 108.9° | 109.8° |
| C1' | N1 | C2 | 119.5° | 119.7° |
| C1' | N1 | C6 | 120.4° | 119.7° |
| C2 | N1 | C6 | 120.1° | 120.6° |
| N1 | C2 | O2 | 120.0° | 119.5° |
| N1 | C2 | N3 | 120.3° | 120.9° |
| N1 | C6 | C5 | 121.5° | 119.7° |
| N1 | C6 | H6 | 119.3° | 120.1° |
| O2 | C2 | N3 | 119.6° | 119.5° |
| C2 | N3 | C4 | 123.3° | 120.3° |
| C2 | N3 | HN3 | 118.3° | 119.8° |
| C4 | N3 | HN3 | 118.4° | 119.9° |
| N3 | C4 | O4 | 123.1° | 120.3° |
| N3 | C4 | C5 | 118.3° | 119.4° |
| O4 | C4 | C5 | 118.6° | 120.3° |
| C4 | C5 | C5M | 121.7° | 120.4° |
| C4 | C5 | C6 | 116.5° | 119.1° |
| C5M | C5 | C6 | 121.8° | 120.4° |
| C5 | C5M | H51 | 109.5° | 109.5° |
| C5 | C5M | H52 | 109.5° | 109.5° |
| C5 | C5M | H53 | 109.5° | 109.4° |
| C5 | C6 | H6 | 119.3° | 120.2° |
| H51 | C5M | H52 | 109.5° | 109.5° |
| H51 | C5M | H53 | 109.4° | 109.4° |
| H52 | C5M | H53 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 130.2° | 120.0° |
| O1P | P | O2P | O5' | 115.6° | 120.0° |
| O1P | P | O3P | O5' | 116.8° | 120.0° |
| O1P | P | O2P | HOP2 | 64.8° | 60.0° |
| O1P | P | O3P | HOP3 | 3.6° | 180.0° |
| O1P | P | O5' | C5' | 69.1° | 54.9° |
| O2P | P | O3P | O5' | 112.1° | 120.0° |
| O2P | P | O3P | HOP3 | 127.4° | 59.9° |
| O2P | P | O5' | C5' | 171.8° | 175.0° |
| O3P | P | O2P | HOP2 | 65.4° | 60.0° |
| O3P | P | O5' | C5' | 49.8° | 65.0° |
| O5' | P | O2P | HOP2 | 179.6° | 180.0° |
| O5' | P | O3P | HOP3 | 120.4° | 60.1° |
| P | O5' | C5' | C4' | 163.5° | 180.0° |
| P | O5' | C5' | H5'1 | 43.4° | 60.0° |
| P | O5' | C5' | H5'2 | 77.2° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 119.9° |
| O5' | C5' | C4' | H5'2 | 119.3° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.3° | 120.0° |
| O5' | C5' | C4' | O4' | 74.2° | 70.7° |
| O5' | C5' | C4' | C3' | 45.4° | 175.0° |
| O5' | C5' | C4' | H4' | 163.5° | 52.1° |
| C4' | C5' | H5'1 | H5'2 | 119.3° | 120.0° |
| C5' | C4' | O4' | C3' | 122.1° | 118.7° |
| C5' | C4' | O4' | H4' | 119.7° | 122.8° |
| C5' | C4' | C3' | H4' | 119.8° | 122.8° |
| C5' | C4' | O4' | C1' | 119.2° | 158.5° |
| C5' | C4' | C3' | O3' | 147.2° | 86.1° |
| C5' | C4' | C3' | C2' | 97.9° | 155.7° |
| C5' | C4' | C3' | H3' | 26.1° | 37.5° |
| H5'1 | C5' | C4' | O4' | 165.8° | 169.3° |
| H5'1 | C5' | C4' | C3' | 74.6° | 55.0° |
| H5'1 | C5' | C4' | H4' | 43.5° | 67.9° |
| H5'2 | C5' | C4' | O4' | 45.1° | 49.3° |
| H5'2 | C5' | C4' | C3' | 164.6° | 65.0° |
| H5'2 | C5' | C4' | H4' | 77.2° | 172.1° |
| O4' | C4' | C3' | H4' | 122.3° | 118.4° |
| O4' | C4' | C3' | O3' | 94.8° | 155.2° |
| O4' | C4' | C3' | C2' | 20.0° | 37.0° |
| O4' | C4' | C3' | H3' | 144.0° | 81.3° |
| C4' | O4' | C1' | C2' | 15.9° | 26.3° |
| C4' | O4' | C1' | N1 | 138.8° | 145.9° |
| C4' | O4' | C1' | H1' | 101.9° | 93.2° |
| C3' | C4' | O4' | C1' | 2.9° | 39.9° |
| C4' | C3' | O3' | C2' | 112.9° | 112.7° |
| C4' | C3' | O3' | H3' | 122.8° | 123.6° |
| C4' | C3' | C2' | H3' | 122.3° | 118.2° |
| C4' | C3' | O3' | HO3' | 113.9° | 174.2° |
| C4' | C3' | C2' | C1' | 27.3° | 20.9° |
| C4' | C3' | C2' | H2'1 | 92.7° | 97.8° |
| C4' | C3' | C2' | H2'2 | 150.3° | 139.6° |
| H4' | C4' | O4' | C1' | 121.1° | 78.7° |
| H4' | C4' | C3' | O3' | 27.4° | 36.7° |
| H4' | C4' | C3' | C2' | 142.3° | 81.5° |
| H4' | C4' | C3' | H3' | 93.7° | 160.3° |
| O4' | C1' | C2' | C3' | 27.4° | 1.9° |
| O4' | C1' | C2' | N1 | 120.1° | 119.5° |
| O4' | C1' | C2' | H1' | 120.8° | 119.5° |
| O4' | C1' | C2' | H2'1 | 92.6° | 120.6° |
| O4' | C1' | C2' | H2'2 | 150.4° | 116.7° |
| O4' | C1' | N1 | H1' | 120.9° | 120.9° |
| O4' | C1' | N1 | C2 | 139.4° | 53.4° |
| O4' | C1' | N1 | C6 | 42.0° | 126.7° |
| O3' | C3' | C2' | H3' | 120.9° | 123.6° |
| O3' | C3' | C2' | C1' | 89.5° | 139.1° |
| O3' | C3' | C2' | H2'1 | 150.5° | 20.4° |
| O3' | C3' | C2' | H2'2 | 33.5° | 102.2° |
| C2' | C3' | O3' | HO3' | 1.0° | 61.5° |
| C3' | C2' | C1' | H2'1 | 120.0° | 118.7° |
| C3' | C2' | C1' | H2'2 | 123.0° | 118.6° |
| C3' | C2' | H2'1 | H2'2 | 123.5° | 122.5° |
| C3' | C2' | C1' | N1 | 147.4° | 121.4° |
| C3' | C2' | C1' | H1' | 93.4° | 117.5° |
| H3' | C3' | O3' | HO3' | 123.3° | 62.2° |
| H3' | C3' | C2' | C1' | 149.6° | 97.3° |
| H3' | C3' | C2' | H2'1 | 29.6° | 144.0° |
| H3' | C3' | C2' | H2'2 | 87.4° | 21.4° |
| C1' | C2' | H2'1 | H2'2 | 123.5° | 122.7° |
| C2' | C1' | N1 | H1' | 117.7° | 121.1° |
| C2' | C1' | N1 | C2 | 99.1° | 64.7° |
| C2' | C1' | N1 | C6 | 79.4° | 115.3° |
| H2'1 | C2' | C1' | N1 | 27.5° | 119.9° |
| H2'1 | C2' | C1' | H1' | 146.6° | 1.1° |
| H2'2 | C2' | C1' | N1 | 89.6° | 2.8° |
| H2'2 | C2' | C1' | H1' | 29.6° | 123.8° |
| C1' | N1 | C2 | C6 | 178.6° | 179.9° |
| C1' | N1 | C2 | O2 | 1.8° | 0.0° |
| C1' | N1 | C2 | N3 | 178.9° | 179.9° |
| C1' | N1 | C6 | C5 | 179.4° | 179.9° |
| C1' | N1 | C6 | H6 | 0.6° | 0.1° |
| H1' | C1' | N1 | C2 | 18.6° | 174.3° |
| H1' | C1' | N1 | C6 | 162.9° | 5.8° |
| N1 | C2 | O2 | N3 | 177.1° | 179.9° |
| N1 | C2 | N3 | C4 | 1.5° | 0.2° |
| N1 | C2 | N3 | HN3 | 178.5° | 180.0° |
| C2 | N1 | C6 | C5 | 2.1° | 0.0° |
| C2 | N1 | C6 | H6 | 177.9° | 180.0° |
| C6 | N1 | C2 | O2 | 176.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.4° | 0.0° |
| N1 | C6 | C5 | C4 | 1.9° | 0.2° |
| N1 | C6 | C5 | C5M | 178.3° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| O2 | C2 | N3 | C4 | 178.6° | 179.8° |
| O2 | C2 | N3 | HN3 | 1.5° | 0.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.8° |
| C2 | N3 | C4 | O4 | 179.0° | 180.0° |
| C2 | N3 | C4 | C5 | 1.5° | 0.4° |
| N3 | C4 | O4 | C5 | 179.5° | 179.5° |
| N3 | C4 | C5 | C5M | 179.9° | 179.8° |
| N3 | C4 | C5 | C6 | 0.2° | 0.4° |
| HN3 | N3 | C4 | O4 | 1.0° | 0.2° |
| HN3 | N3 | C4 | C5 | 178.5° | 179.8° |
| O4 | C4 | C5 | C5M | 0.4° | 0.3° |
| O4 | C4 | C5 | C6 | 179.4° | 180.0° |
| C4 | C5 | C5M | C6 | 179.7° | 179.7° |
| C4 | C5 | C5M | H51 | 157.3° | 90.3° |
| C4 | C5 | C5M | H52 | 82.7° | 29.7° |
| C4 | C5 | C5M | H53 | 37.3° | 149.7° |
| C4 | C5 | C6 | H6 | 178.1° | 179.8° |
| C5 | C5M | H51 | H52 | 120.0° | 120.1° |
| C5 | C5M | H51 | H53 | 120.0° | 120.0° |
| C5 | C5M | H52 | H53 | 120.0° | 120.0° |
| C5M | C5 | C6 | H6 | 1.7° | 0.0° |
| C6 | C5 | C5M | H51 | 23.0° | 90.0° |
| C6 | C5 | C5M | H52 | 97.0° | 150.0° |
| C6 | C5 | C5M | H53 | 143.0° | 30.0° |
| H51 | C5M | H52 | H53 | 119.9° | 120.0° |
