TMD
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CN | sing | 1.47Å | 1.51Å | |
N | CA | sing | 1.47Å | 1.47Å | |
N | H | sing | 1.01Å | 1.02Å | |
CN | HN1 | sing | 1.09Å | 1.11Å | |
CN | HN2 | sing | 1.09Å | 1.11Å | |
CN | HN3 | sing | 1.09Å | 1.12Å | |
CA | C | sing | 1.51Å | 1.54Å | |
CA | CB | sing | 1.53Å | 1.59Å | |
CA | HA | sing | 1.09Å | 1.11Å | |
C | O | doub | 1.21Å | 1.24Å | |
C | OXT | sing | 1.34Å | 1.35Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
CB | OG2 | sing | 1.43Å | 1.42Å | |
CB | CG1 | sing | 1.53Å | 1.57Å | |
CB | HB | sing | 1.09Å | 1.11Å | |
CD1 | CE | sing | 1.53Å | 1.52Å | |
CD1 | CG1 | sing | 1.53Å | 1.55Å | |
CD1 | HD13 | sing | 1.09Å | 1.12Å | |
CD1 | HD12 | sing | 1.09Å | 1.12Å | |
CD2 | CG1 | sing | 1.53Å | 1.52Å | |
CD2 | HD21 | sing | 1.09Å | 1.12Å | |
CD2 | HD22 | sing | 1.09Å | 1.12Å | |
CD2 | HD23 | sing | 1.09Å | 1.11Å | |
CE | CZ | sing | 1.53Å | 1.52Å | |
CE | HE2 | sing | 1.09Å | 1.11Å | |
CE | HE3 | sing | 1.09Å | 1.12Å | |
CZ | CH | sing | 1.53Å | 1.56Å | |
CZ | HZ2 | sing | 1.09Å | 1.12Å | |
CZ | HZ3 | sing | 1.09Å | 1.11Å | |
CH | HH1 | sing | 1.09Å | 1.12Å | |
CH | HH2 | sing | 1.09Å | 1.11Å | |
CH | HH3 | sing | 1.09Å | 1.12Å | |
OG2 | HG2 | sing | 0.97Å | 0.95Å | |
CG1 | HG1 | sing | 1.09Å | 1.12Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CN | N | CA | 120.7° | 106.7° |
CN | N | H | 108.2° | 106.7° |
N | CN | HN1 | 120.7° | 109.4° |
N | CN | HN2 | 108.2° | 109.5° |
N | CN | HN3 | 108.2° | 109.5° |
CA | N | H | 108.2° | 106.6° |
N | CA | C | 115.4° | 109.5° |
N | CA | CB | 112.6° | 109.5° |
N | CA | HA | 102.4° | 109.4° |
HN1 | CN | HN2 | 108.3° | 109.4° |
HN1 | CN | HN3 | 108.2° | 109.5° |
HN2 | CN | HN3 | 101.7° | 109.5° |
C | CA | CB | 107.8° | 109.6° |
C | CA | HA | 107.7° | 109.5° |
CA | C | O | 123.1° | 120.0° |
CA | C | OXT | 116.2° | 120.1° |
CB | CA | HA | 110.8° | 109.5° |
CA | CB | OG2 | 106.0° | 109.5° |
CA | CB | CG1 | 115.6° | 109.5° |
CA | CB | HB | 107.3° | 109.5° |
O | C | OXT | 120.6° | 119.9° |
C | OXT | HXT | 116.3° | 120.1° |
OG2 | CB | CG1 | 108.0° | 109.5° |
OG2 | CB | HB | 115.0° | 109.4° |
CB | OG2 | HG2 | 106.0° | 106.7° |
CG1 | CB | HB | 105.2° | 109.5° |
CB | CG1 | CD1 | 110.8° | 109.6° |
CB | CG1 | CD2 | 110.3° | 109.5° |
CB | CG1 | HG1 | 108.0° | 109.5° |
CE | CD1 | CG1 | 115.2° | 109.6° |
CE | CD1 | HD13 | 110.1° | 109.5° |
CE | CD1 | HD12 | 110.1° | 109.5° |
CD1 | CE | CZ | 114.5° | 109.6° |
CD1 | CE | HE2 | 110.4° | 109.4° |
CD1 | CE | HE3 | 110.4° | 109.5° |
CG1 | CD1 | HD13 | 110.2° | 109.4° |
CG1 | CD1 | HD12 | 110.1° | 109.5° |
CD1 | CG1 | CD2 | 109.4° | 109.4° |
CD1 | CG1 | HG1 | 108.9° | 109.5° |
HD13 | CD1 | HD12 | 100.1° | 109.4° |
CG1 | CD2 | HD21 | 110.3° | 109.4° |
CG1 | CD2 | HD22 | 111.9° | 109.5° |
CG1 | CD2 | HD23 | 112.0° | 109.5° |
CD2 | CG1 | HG1 | 109.4° | 109.4° |
HD21 | CD2 | HD22 | 111.9° | 109.4° |
HD21 | CD2 | HD23 | 111.8° | 109.5° |
HD22 | CD2 | HD23 | 98.5° | 109.5° |
CZ | CE | HE2 | 110.4° | 109.5° |
CZ | CE | HE3 | 110.3° | 109.5° |
CE | CZ | CH | 108.2° | 109.5° |
CE | CZ | HZ2 | 112.7° | 109.5° |
CE | CZ | HZ3 | 112.7° | 109.4° |
HE2 | CE | HE3 | 99.9° | 109.4° |
CH | CZ | HZ2 | 112.6° | 109.5° |
CH | CZ | HZ3 | 112.7° | 109.5° |
CZ | CH | HH1 | 108.2° | 109.5° |
CZ | CH | HH2 | 112.7° | 109.5° |
CZ | CH | HH3 | 112.7° | 109.5° |
HZ2 | CZ | HZ3 | 97.8° | 109.4° |
HH1 | CH | HH2 | 112.7° | 109.5° |
HH1 | CH | HH3 | 112.6° | 109.4° |
HH2 | CH | HH3 | 97.8° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CN | N | CA | H | 125.3° | 113.7° |
N | CN | HN1 | HN2 | 125.3° | 119.9° |
N | CN | HN1 | HN3 | 125.2° | 120.0° |
N | CN | HN2 | HN3 | 113.8° | 120.0° |
CN | N | CA | C | 59.0° | 89.9° |
CN | N | CA | CB | 65.4° | 150.0° |
CN | N | CA | HA | 175.7° | 30.0° |
CA | N | CN | HN1 | 180.0° | 180.0° |
CA | N | CN | HN2 | 54.7° | 60.1° |
CA | N | CN | HN3 | 54.7° | 60.0° |
N | CA | C | CB | 126.8° | 120.1° |
N | CA | C | HA | 113.6° | 119.9° |
N | CA | CB | HA | 113.9° | 119.9° |
N | CA | C | O | 4.8° | 150.0° |
N | CA | C | OXT | 172.1° | 30.1° |
N | CA | CB | OG2 | 71.3° | 60.1° |
N | CA | CB | CG1 | 48.4° | 60.0° |
N | CA | CB | HB | 165.3° | 180.0° |
H | N | CN | HN1 | 54.7° | 66.3° |
H | N | CN | HN2 | 180.0° | 173.8° |
H | N | CN | HN3 | 70.5° | 53.7° |
H | N | CA | C | 175.7° | 23.8° |
H | N | CA | CB | 59.9° | 96.3° |
H | N | CA | HA | 59.1° | 143.8° |
HN1 | CN | HN2 | HN3 | 113.8° | 120.0° |
C | CA | CB | HA | 117.6° | 120.0° |
CA | C | O | OXT | 176.8° | 180.0° |
CA | C | OXT | HXT | 180.0° | 179.9° |
C | CA | CB | OG2 | 57.2° | 60.0° |
C | CA | CB | CG1 | 176.8° | 180.0° |
C | CA | CB | HB | 66.2° | 60.0° |
CB | CA | C | O | 122.0° | 90.0° |
CB | CA | C | OXT | 61.1° | 90.0° |
CA | CB | OG2 | CG1 | 124.5° | 120.1° |
CA | CB | OG2 | HB | 118.4° | 120.0° |
CA | CB | CG1 | HB | 118.1° | 120.0° |
CA | CB | CG1 | CD1 | 178.8° | 180.0° |
CA | CB | CG1 | CD2 | 57.5° | 60.0° |
CA | CB | OG2 | HG2 | 180.0° | 60.0° |
CA | CB | CG1 | HG1 | 62.1° | 60.0° |
HA | CA | C | O | 118.4° | 30.1° |
HA | CA | C | OXT | 58.5° | 150.0° |
HA | CA | CB | OG2 | 174.8° | 180.0° |
HA | CA | CB | CG1 | 65.6° | 60.0° |
HA | CA | CB | HB | 51.4° | 60.1° |
O | C | OXT | HXT | 3.0° | 0.0° |
OG2 | CB | CG1 | HB | 123.3° | 119.9° |
OG2 | CB | CG1 | CD1 | 62.7° | 60.0° |
OG2 | CB | CG1 | CD2 | 176.0° | 180.0° |
OG2 | CB | CG1 | HG1 | 56.5° | 60.1° |
CB | CG1 | CD1 | CE | 58.5° | 180.0° |
CB | CG1 | CD1 | CD2 | 121.8° | 120.0° |
CB | CG1 | CD1 | HG1 | 118.7° | 120.1° |
CB | CG1 | CD1 | HD13 | 66.8° | 60.0° |
CB | CG1 | CD1 | HD12 | 176.2° | 60.0° |
CB | CG1 | CD2 | HG1 | 118.7° | 120.0° |
CB | CG1 | CD2 | HD21 | 180.0° | 60.0° |
CB | CG1 | CD2 | HD22 | 54.8° | 59.9° |
CB | CG1 | CD2 | HD23 | 54.8° | 180.0° |
CG1 | CB | OG2 | HG2 | 55.5° | 60.0° |
HB | CB | CG1 | CD1 | 60.6° | 60.0° |
HB | CB | CG1 | CD2 | 60.7° | 60.0° |
HB | CB | OG2 | HG2 | 61.6° | 180.0° |
HB | CB | CG1 | HG1 | 179.8° | 180.0° |
CE | CD1 | CG1 | HD13 | 125.3° | 120.0° |
CE | CD1 | CG1 | HD12 | 125.3° | 120.0° |
CE | CD1 | HD13 | HD12 | 115.9° | 120.0° |
CE | CD1 | CG1 | CD2 | 63.3° | 60.0° |
CD1 | CE | CZ | HE2 | 125.3° | 120.0° |
CD1 | CE | CZ | HE3 | 125.3° | 120.0° |
CD1 | CE | HE2 | HE3 | 116.2° | 119.9° |
CD1 | CE | CZ | CH | 177.4° | 180.0° |
CD1 | CE | CZ | HZ2 | 57.4° | 60.0° |
CD1 | CE | CZ | HZ3 | 52.1° | 60.0° |
CE | CD1 | CG1 | HG1 | 177.2° | 59.9° |
CG1 | CD1 | HD13 | HD12 | 115.9° | 119.9° |
CD1 | CG1 | CD2 | HG1 | 119.2° | 119.9° |
CD1 | CG1 | CD2 | HD21 | 57.9° | 60.1° |
CD1 | CG1 | CD2 | HD22 | 67.4° | 180.0° |
CD1 | CG1 | CD2 | HD23 | 176.9° | 59.9° |
CG1 | CD1 | CE | CZ | 173.7° | 180.0° |
CG1 | CD1 | CE | HE2 | 48.4° | 59.9° |
CG1 | CD1 | CE | HE3 | 61.1° | 60.0° |
HD13 | CD1 | CG1 | CD2 | 171.4° | 60.1° |
HD13 | CD1 | CE | CZ | 48.4° | 60.0° |
HD13 | CD1 | CE | HE2 | 76.9° | 180.0° |
HD13 | CD1 | CE | HE3 | 173.6° | 60.1° |
HD13 | CD1 | CG1 | HG1 | 51.9° | 180.0° |
HD12 | CD1 | CG1 | CD2 | 62.0° | 180.0° |
HD12 | CD1 | CE | CZ | 61.0° | 60.0° |
HD12 | CD1 | CE | HE2 | 173.7° | 60.1° |
HD12 | CD1 | CE | HE3 | 64.2° | 180.0° |
HD12 | CD1 | CG1 | HG1 | 57.6° | 60.1° |
CG1 | CD2 | HD21 | HD22 | 125.3° | 120.0° |
CG1 | CD2 | HD21 | HD23 | 125.3° | 120.0° |
CG1 | CD2 | HD22 | HD23 | 117.9° | 120.1° |
HD21 | CD2 | HD22 | HD23 | 117.7° | 120.0° |
HD21 | CD2 | CG1 | HG1 | 61.3° | 180.0° |
HD22 | CD2 | CG1 | HG1 | 173.4° | 60.1° |
HD23 | CD2 | CG1 | HG1 | 63.9° | 60.0° |
CZ | CE | HE2 | HE3 | 116.2° | 120.0° |
CE | CZ | CH | HZ2 | 125.2° | 120.0° |
CE | CZ | CH | HZ3 | 125.3° | 120.0° |
CE | CZ | HZ2 | HZ3 | 118.6° | 120.0° |
CE | CZ | CH | HH1 | 180.0° | 180.0° |
CE | CZ | CH | HH2 | 54.7° | 60.0° |
CE | CZ | CH | HH3 | 54.8° | 60.0° |
HE2 | CE | CZ | CH | 52.1° | 60.0° |
HE2 | CE | CZ | HZ2 | 177.3° | 179.9° |
HE2 | CE | CZ | HZ3 | 73.2° | 60.0° |
HE3 | CE | CZ | CH | 57.4° | 60.0° |
HE3 | CE | CZ | HZ2 | 67.9° | 60.1° |
HE3 | CE | CZ | HZ3 | 177.3° | 180.0° |
CH | CZ | HZ2 | HZ3 | 118.6° | 120.0° |
CZ | CH | HH1 | HH2 | 125.3° | 120.1° |
CZ | CH | HH1 | HH3 | 125.2° | 120.0° |
CZ | CH | HH2 | HH3 | 118.6° | 120.0° |
HZ2 | CZ | CH | HH1 | 54.7° | 60.0° |
HZ2 | CZ | CH | HH2 | 180.0° | 60.1° |
HZ2 | CZ | CH | HH3 | 70.4° | 179.9° |
HZ3 | CZ | CH | HH1 | 54.7° | 60.0° |
HZ3 | CZ | CH | HH2 | 70.5° | 180.0° |
HZ3 | CZ | CH | HH3 | 179.9° | 60.0° |
HH1 | CH | HH2 | HH3 | 118.5° | 119.9° |