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TM1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.39ÅAromatic
N1C6sing1.33Å1.43ÅAromatic
C2N3sing1.32Å1.38ÅAromatic
C2H2sing1.08Å1.08Å
N3C4doub1.33Å1.40ÅAromatic
C4C5sing1.40Å1.41ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C5C6doub1.41Å1.46ÅAromatic
C5N7sing1.35Å1.32ÅAromatic
C6N6sing1.38Å1.33Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
N7C8doub1.30Å1.34ÅAromatic
C8N9sing1.36Å1.36ÅAromatic
C8H8sing1.08Å1.08Å
N9C1'sing1.46Å1.60Å
PAO1Asing1.61Å1.57Å
PAO2Adoub1.48Å1.51Å
PAO3Asing1.61Å1.58Å
PAO5'sing1.61Å1.65Å
C1'C2'sing1.55Å1.58Å
C1'O4'sing1.44Å1.42Å
C1'H1'sing1.09Å1.10Å
O1AHO1Asing0.97Å0.95Å
C1FO2'sing1.44Å1.51Å
C1FC2Fsing1.50Å1.55Å
C1FO3'sing1.44Å1.50Å
C1FC6Fsing1.50Å1.53Å
C2'O2'sing1.44Å1.46Å
C2'C3'sing1.56Å1.51Å
C2'H2'sing1.09Å1.10Å
C2FN2Fsing1.48Å1.48Å
C2FC3Fdoub1.30Å1.40Å
N2FO2Fsing1.22Å1.22Å
N2FO3Fdoub1.22Å1.25Å
C3'O3'sing1.45Å1.45Å
C3'C4'sing1.54Å1.44Å
C3'H3'sing1.09Å1.10Å
O3AHO3Asing0.97Å0.95Å
C3FC4Fsing1.50Å1.39Å
C3FH3Fsing1.08Å1.08Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.62Å
C4'H4'sing1.09Å1.10Å
C4FN4Fsing1.46Å1.33Å
C4FC5Fsing1.50Å1.42Å
C4FH4Fsing1.09Å1.10Å
N4FO4Fsing1.22Å1.21Å
N4FO5Fdoub1.22Å1.19Å
C5'O5'sing1.43Å1.49Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C5FC6Fdoub1.30Å1.51Å
C5FH5Fsing1.08Å1.08Å
C6FN6Fsing1.48Å1.42Å
N6FO6Fsing1.22Å1.21Å
N6FO7Fdoub1.22Å1.16Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6118.8°121.2°
N1C2N3121.0°122.5°
N1C2H2119.5°118.8°
N1C6C5119.5°118.5°
N1C6N6121.1°120.8°
N3C2H2119.5°118.8°
C2N3C4123.1°120.6°
N3C4C5117.7°119.1°
N3C4N9136.9°134.9°
C5C4N9105.4°106.0°
C4C5C6120.0°118.2°
C4C5N7110.6°107.2°
C4N9C8107.7°107.4°
C4N9C1'126.3°126.3°
C6C5N7129.5°134.7°
C5C6N6119.4°120.8°
C5N7C8105.6°109.5°
C6N6HN6109.5°120.0°
C6N6HN6A109.4°120.0°
HN6N6HN6A109.4°120.0°
N7C8N9110.7°110.0°
N7C8H8124.6°125.0°
N9C8H8124.6°125.0°
C8N9C1'126.0°126.3°
N9C1'C2'114.3°110.6°
N9C1'O4'110.1°110.5°
N9C1'H1'103.1°110.5°
O1APAO2A109.3°109.5°
O1APAO3A108.1°109.5°
O1APAO5'107.6°109.4°
PAO1AHO1A109.5°114.0°
O2APAO3A110.6°109.5°
O2APAO5'110.7°109.5°
O3APAO5'110.3°109.5°
PAO3AHO3A109.5°114.0°
PAO5'C5'127.5°123.0°
C2'C1'O4'99.3°103.8°
C2'C1'H1'113.3°110.5°
C1'C2'O2'114.8°108.9°
C1'C2'C3'105.6°102.2°
C1'C2'H2'109.9°113.0°
O4'C1'H1'117.2°110.7°
C1'O4'C4'121.6°106.9°
O2'C1FC2F101.0°109.9°
O2'C1FO3'114.2°106.2°
O2'C1FC6F112.1°110.0°
C1FO2'C2'100.3°107.2°
C2FC1FO3'115.2°109.6°
C2FC1FC6F113.5°111.5°
C1FC2FN2F123.9°118.6°
C1FC2FC3F120.8°122.7°
O3'C1FC6F101.4°109.6°
C1FO3'C3'103.8°103.6°
C1FC6FC5F118.0°122.7°
C1FC6FN6F127.4°118.6°
O2'C2'C3'113.0°105.0°
O2'C2'H2'101.9°113.0°
C3'C2'H2'111.8°113.9°
C2'C3'O3'107.8°102.9°
C2'C3'C4'112.9°104.1°
C2'C3'H3'107.7°113.4°
N2FC2FC3F115.4°118.7°
C2FN2FO2F126.5°120.0°
C2FN2FO3F122.2°120.0°
C2FC3FC4F126.8°122.9°
C2FC3FH3F116.6°118.6°
O2FN2FO3F111.3°120.0°
O3'C3'C4'107.6°108.6°
O3'C3'H3'113.0°113.2°
C4'C3'H3'107.9°113.7°
C3'C4'O4'100.6°107.4°
C3'C4'C5'116.0°109.9°
C3'C4'H4'112.8°109.8°
C4FC3FH3F116.6°118.6°
C3FC4FN4F125.9°109.1°
C3FC4FC5F116.5°111.3°
C3FC4FH4F68.8°109.1°
O4'C4'C5'113.9°109.9°
O4'C4'H4'115.0°109.9°
C5'C4'H4'99.3°109.9°
C4'C5'O5'125.8°109.5°
C4'C5'H5'104.4°109.5°
C4'C5'H5'A104.3°109.4°
N4FC4FC5F117.6°109.1°
N4FC4FH4F57.1°109.1°
C4FN4FO4F123.4°120.0°
C4FN4FO5F121.8°120.0°
C5FC4FH4F174.7°109.0°
C4FC5FC6F124.4°122.8°
C4FC5FH5F117.8°118.6°
O4FN4FO5F114.8°120.0°
O5'C5'H5'104.3°109.5°
O5'C5'H5'A104.4°109.5°
H5'C5'H5'A114.1°109.4°
C6FC5FH5F117.8°118.6°
C5FC6FN6F114.7°118.7°
C6FN6FO6F122.4°120.0°
C6FN6FO7F126.5°120.1°
O6FN6FO7F111.1°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3H2180.0°179.9°
N1C2N3C40.0°0.0°
C2N1C6C50.0°0.0°
C2N1C6N6179.9°179.9°
C6N1C2N30.0°0.0°
C6N1C2H2180.0°180.0°
N1C6C5C40.0°0.0°
N1C6C5N6179.9°180.0°
N1C6C5N7179.9°180.0°
N1C6N6HN60.0°0.1°
N1C6N6HN6A120.0°180.0°
C2N3C4C50.0°0.1°
C2N3C4N9180.0°180.0°
H2C2N3C4180.0°179.9°
N3C4C5N9179.9°180.0°
N3C4C5C60.1°0.1°
N3C4C5N7180.0°180.0°
N3C4N9C8180.0°180.0°
N3C4N9C1'0.3°0.1°
C4C5C6N7179.9°180.0°
C4C5C6N6179.9°180.0°
C4C5N7C80.1°0.0°
C5C4N9C80.0°0.0°
C5C4N9C1'179.8°180.0°
N9C4C5C6180.0°180.0°
N9C4C5N70.1°0.0°
C4N9C8N70.0°0.0°
C4N9C8C1'179.8°180.0°
C4N9C8H8180.0°180.0°
C4N9C1'C2'99.0°85.0°
C4N9C1'O4'150.3°160.6°
C4N9C1'H1'24.5°37.7°
C5C6N6HN6179.9°180.0°
C5C6N6HN6A59.9°0.1°
C6C5N7C8180.0°180.0°
N7C5C6N60.0°0.1°
C5N7C8N90.1°0.0°
C5N7C8H8179.9°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°179.9°
N7C8N9C1'179.8°180.0°
C8N9C1'C2'81.3°95.0°
C8N9C1'O4'29.4°19.4°
C8N9C1'H1'155.3°142.2°
H8C8N9C1'0.3°0.1°
N9C1'C2'O4'117.1°118.5°
N9C1'C2'H1'117.8°122.8°
N9C1'O4'H1'117.4°122.8°
N9C1'C2'O2'117.3°94.9°
N9C1'C2'C3'117.5°154.3°
N9C1'C2'H2'3.2°31.5°
N9C1'O4'C4'120.4°158.6°
O1APAO2AO3A119.0°120.0°
O1APAO2AO5'118.4°120.0°
O1APAO3AO5'117.4°119.9°
O1APAO3AHO3A119.7°60.0°
O1APAO5'C5'115.8°65.1°
O2APAO3AO5'122.9°120.0°
O2APAO1AHO1A0.0°180.0°
O2APAO3AHO3A0.0°60.0°
O2APAO5'C5'124.7°54.9°
O3APAO1AHO1A120.5°60.0°
O3APAO5'C5'1.9°175.0°
O5'PAO1AHO1A120.3°60.0°
O5'PAO3AHO3A122.9°180.0°
PAO5'C5'C4'144.6°180.0°
PAO5'C5'H5'95.4°59.9°
PAO5'C5'H5'A24.7°60.0°
C2'C1'O4'H1'122.3°118.6°
C1'C2'O2'C1F117.9°113.1°
C1'C2'O2'C3'121.2°108.9°
C1'C2'O2'H2'118.7°126.4°
C1'C2'C3'H2'119.5°122.2°
C1'C2'C3'O3'118.3°94.3°
C1'C2'C3'C4'0.4°19.0°
C1'C2'C3'H3'119.5°143.0°
C2'C1'O4'C4'0.2°40.1°
O4'C1'C2'O2'125.6°146.5°
O4'C1'C2'C3'0.4°35.8°
O4'C1'C2'H2'120.3°87.0°
C1'O4'C4'C3'0.1°27.7°
C1'O4'C4'C5'124.7°147.2°
C1'O4'C4'H4'121.6°91.8°
H1'C1'C2'O2'0.4°27.8°
H1'C1'C2'C3'124.7°82.9°
H1'C1'C2'H2'114.6°154.2°
H1'C1'O4'C4'122.1°78.5°
O2'C1FC2FO3'123.6°116.3°
O2'C1FC2FC6F120.1°122.2°
O2'C1FO3'C6F120.7°118.8°
C1FO2'C2'C3'3.3°4.2°
C1FO2'C2'H2'123.4°120.5°
O2'C1FC2FN2F60.6°38.4°
O2'C1FC2FC3F119.5°141.5°
O2'C1FO3'C3'7.1°39.4°
O2'C1FC6FC5F113.0°141.4°
O2'C1FC6FN6F66.6°38.6°
C2FC1FO3'C6F123.0°122.6°
C2FC1FO2'C2'121.8°91.6°
C1FC2FN2FC3F179.9°180.0°
C1FC2FN2FO2F0.0°83.3°
C1FC2FN2FO3F179.7°96.8°
C2FC1FO3'C3'109.2°79.2°
C1FC2FC3FC4F0.3°0.1°
C1FC2FC3FH3F179.7°180.0°
C2FC1FC6FC5F0.6°19.3°
C2FC1FC6FN6F179.8°160.7°
O3'C1FO2'C2'2.4°26.8°
C1FO3'C3'C2'8.5°35.2°
O3'C1FC2FN2F63.0°77.8°
O3'C1FC2FC3F116.9°102.2°
C1FO3'C3'C4'130.6°145.1°
C1FO3'C3'H3'110.4°87.6°
O3'C1FC6FC5F124.7°102.2°
O3'C1FC6FN6F55.7°77.8°
C6FC1FO2'C2'117.0°145.3°
C6FC1FC2FN2F179.3°160.6°
C6FC1FC2FC3F0.6°19.3°
C6FC1FO3'C3'127.9°158.2°
C1FC6FC5FC4F0.3°0.2°
C1FC6FC5FN6F179.7°180.0°
C1FC6FC5FH5F179.8°179.9°
C1FC6FN6FO6F179.8°180.0°
C1FC6FN6FO7F0.4°0.0°
O2'C2'C3'H2'114.3°124.1°
O2'C2'C3'O3'7.9°19.4°
O2'C2'C3'C4'126.7°132.7°
O2'C2'C3'H3'114.3°103.3°
C2'C3'O3'C4'122.1°109.9°
C2'C3'O3'H3'118.9°122.8°
C2'C3'C4'H3'118.9°123.9°
C2'C3'C4'O4'0.3°4.0°
C2'C3'C4'C5'123.0°123.5°
C2'C3'C4'H4'123.4°115.5°
H2'C2'C3'O3'122.2°143.4°
H2'C2'C3'C4'119.0°103.2°
H2'C2'C3'H3'0.0°20.8°
C2FN2FO2FO3F179.7°180.0°
N2FC2FC3FC4F179.6°180.0°
N2FC2FC3FH3F0.4°0.0°
C3FC2FN2FO2F179.9°96.7°
C3FC2FN2FO3F0.2°83.2°
C2FC3FC4FH3F180.0°180.0°
C2FC3FC4FN4F179.9°101.1°
C2FC3FC4FC5F0.1°19.5°
C2FC3FC4FH4F179.8°139.8°
O3'C3'C4'H3'122.2°127.0°
O3'C3'C4'O4'118.6°113.1°
O3'C3'C4'C5'118.1°127.4°
O3'C3'C4'H4'4.5°6.3°
C3'C4'O4'C5'124.7°119.5°
C3'C4'O4'H4'121.6°119.4°
C3'C4'C5'H4'121.2°121.0°
C3'C4'C5'O5'178.4°175.0°
C3'C4'C5'H5'58.4°54.9°
C3'C4'C5'H5'A61.6°65.0°
H3'C3'C4'O4'119.2°119.9°
H3'C3'C4'C5'4.1°0.4°
H3'C3'C4'H4'117.7°120.7°
C3FC4FN4FC5F180.0°121.9°
C3FC4FN4FH4F0.1°119.1°
C3FC4FC5FH4F179.5°120.4°
C3FC4FN4FO4F102.8°60.0°
C3FC4FN4FO5F77.4°120.0°
C3FC4FC5FC6F0.1°19.5°
C3FC4FC5FH5F179.8°160.6°
H3FC3FC4FN4F0.1°78.9°
H3FC3FC4FC5F179.9°160.6°
H3FC3FC4FH4F0.2°40.2°
O4'C4'C5'H4'122.8°121.0°
O4'C4'C5'O5'65.6°67.0°
O4'C4'C5'H5'174.4°172.9°
O4'C4'C5'H5'A54.4°53.0°
C4'C5'O5'H5'120.0°120.1°
C4'C5'O5'H5'A120.0°120.0°
C4'C5'H5'H5'A113.2°119.9°
H4'C4'C5'O5'57.2°54.0°
H4'C4'C5'H5'62.8°66.1°
H4'C4'C5'H5'A177.2°174.0°
N4FC4FC5FH4F0.5°119.1°
C4FN4FO4FO5F179.8°180.0°
N4FC4FC5FC6F179.9°101.0°
N4FC4FC5FH5F0.2°78.9°
C5FC4FN4FO4F77.2°61.9°
C5FC4FN4FO5F102.5°118.2°
C4FC5FC6FH5F180.0°179.9°
C4FC5FC6FN6F179.9°179.8°
H4FC4FN4FO4F102.7°179.1°
H4FC4FN4FO5F77.5°0.9°
H4FC4FC5FC6F179.4°139.9°
H4FC4FC5FH5F0.6°40.2°
O5'C5'H5'H5'A113.2°120.0°
C5FC6FN6FO6F0.1°0.0°
C5FC6FN6FO7F180.0°180.0°
H5FC5FC6FN6F0.1°0.1°
C6FN6FO6FO7F179.9°180.0°

223532

PDB entries from 2024-08-07

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