TLN
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.46Å | 1.42Å | |
| C4' | C3' | sing | 1.57Å | 1.52Å | |
| C4' | C6' | sing | 1.56Å | 1.54Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N1 | sing | 1.46Å | 1.50Å | |
| C1' | C2' | sing | 1.56Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.08Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| C6 | C5 | doub | 1.35Å | 1.36Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C5 | C5M | sing | 1.51Å | 1.53Å | |
| C5 | C4 | sing | 1.42Å | 1.46Å | |
| C5M | H71 | sing | 1.09Å | 1.09Å | |
| C5M | H72 | sing | 1.09Å | 1.09Å | |
| C5M | H73 | sing | 1.09Å | 1.09Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | N3 | sing | 1.35Å | 1.39Å | |
| N3 | C2 | sing | 1.35Å | 1.40Å | |
| N3 | H3 | sing | 0.97Å | 1.02Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C3' | C2' | sing | 1.57Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| C2' | O2' | sing | 1.46Å | 1.43Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| O2' | C6' | sing | 1.44Å | 1.43Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C6' | H6'1 | sing | 1.09Å | 1.09Å | |
| C6' | H6'2 | sing | 1.09Å | 1.09Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 120.0° | 109.5° |
| OP1 | P | OP3 | 108.1° | 109.4° |
| OP1 | P | O5' | 108.4° | 109.5° |
| OP2 | P | OP3 | 108.3° | 109.4° |
| OP2 | P | O5' | 108.8° | 109.5° |
| P | OP2 | HOP2 | 120.0° | 106.8° |
| OP3 | P | O5' | 101.6° | 109.5° |
| P | OP3 | HOP3 | 108.2° | 106.8° |
| P | O5' | C5' | 122.4° | 106.8° |
| O5' | C5' | C4' | 107.8° | 109.5° |
| O5' | C5' | H5' | 110.5° | 109.4° |
| O5' | C5' | H5'' | 109.3° | 109.5° |
| C4' | C5' | H5' | 109.5° | 109.5° |
| C4' | C5' | H5'' | 110.0° | 109.5° |
| C5' | C4' | O4' | 111.4° | 116.3° |
| C5' | C4' | C3' | 114.5° | 117.4° |
| C5' | C4' | C6' | 117.0° | 116.4° |
| H5' | C5' | H5'' | 109.7° | 109.4° |
| O4' | C4' | C3' | 105.0° | 101.2° |
| O4' | C4' | C6' | 106.6° | 103.9° |
| C4' | O4' | C1' | 105.8° | 107.0° |
| C3' | C4' | C6' | 101.1° | 99.0° |
| C4' | C3' | C2' | 88.3° | 93.2° |
| C4' | C3' | O3' | 114.6° | 112.7° |
| C4' | C3' | H3' | 112.8° | 112.6° |
| C4' | C6' | O2' | 101.9° | 105.3° |
| C4' | C6' | H6'1 | 111.3° | 110.3° |
| C4' | C6' | H6'2 | 110.9° | 110.2° |
| O4' | C1' | N1 | 112.4° | 110.3° |
| O4' | C1' | C2' | 101.6° | 105.4° |
| O4' | C1' | H1' | 109.1° | 110.3° |
| N1 | C1' | C2' | 115.2° | 110.3° |
| N1 | C1' | H1' | 112.0° | 110.2° |
| C1' | N1 | C6 | 120.3° | 119.7° |
| C1' | N1 | C2 | 119.5° | 119.7° |
| C2' | C1' | H1' | 105.8° | 110.2° |
| C1' | C2' | C3' | 102.9° | 98.9° |
| C1' | C2' | O2' | 106.4° | 103.9° |
| C1' | C2' | H2' | 113.0° | 117.2° |
| C6 | N1 | C2 | 120.3° | 120.6° |
| N1 | C6 | C5 | 122.7° | 119.7° |
| N1 | C6 | H6 | 116.9° | 120.2° |
| N1 | C2 | N3 | 116.4° | 121.0° |
| N1 | C2 | O2 | 123.0° | 119.5° |
| C5 | C6 | H6 | 120.4° | 120.1° |
| C6 | C5 | C5M | 120.0° | 120.4° |
| C6 | C5 | C4 | 120.0° | 119.1° |
| C5M | C5 | C4 | 120.0° | 120.4° |
| C5 | C5M | H71 | 109.6° | 109.5° |
| C5 | C5M | H72 | 111.4° | 109.5° |
| C5 | C5M | H73 | 110.7° | 109.5° |
| C5 | C4 | O4 | 126.2° | 120.3° |
| C5 | C4 | N3 | 114.6° | 119.4° |
| H71 | C5M | H72 | 108.2° | 109.4° |
| H71 | C5M | H73 | 108.1° | 109.5° |
| H72 | C5M | H73 | 108.8° | 109.4° |
| O4 | C4 | N3 | 119.2° | 120.3° |
| C4 | N3 | C2 | 125.9° | 120.3° |
| C4 | N3 | H3 | 114.8° | 119.8° |
| C2 | N3 | H3 | 119.1° | 119.9° |
| N3 | C2 | O2 | 120.5° | 119.6° |
| C2' | C3' | O3' | 115.1° | 112.5° |
| C2' | C3' | H3' | 113.0° | 112.5° |
| C3' | C2' | O2' | 104.3° | 101.1° |
| C3' | C2' | H2' | 115.1° | 116.8° |
| O3' | C3' | H3' | 111.4° | 112.1° |
| C3' | O3' | HO3' | 114.6° | 106.9° |
| O2' | C2' | H2' | 114.0° | 116.2° |
| C2' | O2' | C6' | 105.3° | 107.0° |
| O2' | C6' | H6'1 | 111.5° | 110.3° |
| O2' | C6' | H6'2 | 109.9° | 110.3° |
| H6'1 | C6' | H6'2 | 111.1° | 110.3° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 124.7° | 120.0° |
| OP1 | P | OP2 | O5' | 125.6° | 120.0° |
| OP1 | P | OP3 | O5' | 114.0° | 120.0° |
| OP1 | P | OP2 | HOP2 | 180.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 180.0° | 60.0° |
| OP1 | P | O5' | C5' | 164.9° | 60.0° |
| OP2 | P | OP3 | O5' | 114.5° | 120.0° |
| OP2 | P | OP3 | HOP3 | 48.5° | 60.0° |
| OP2 | P | O5' | C5' | 32.8° | 60.1° |
| OP3 | P | OP2 | HOP2 | 55.3° | 60.0° |
| OP3 | P | O5' | C5' | 81.3° | 179.9° |
| O5' | P | OP2 | HOP2 | 54.4° | 60.0° |
| O5' | P | OP3 | HOP3 | 66.0° | 180.0° |
| P | O5' | C5' | C4' | 167.0° | 180.0° |
| P | O5' | C5' | H5' | 47.3° | 60.0° |
| P | O5' | C5' | H5'' | 73.4° | 59.9° |
| O5' | C5' | C4' | H5' | 120.3° | 120.0° |
| O5' | C5' | C4' | H5'' | 119.1° | 120.1° |
| O5' | C5' | H5' | H5'' | 120.5° | 120.0° |
| O5' | C5' | C4' | O4' | 70.4° | 61.1° |
| O5' | C5' | C4' | C3' | 48.5° | 178.9° |
| O5' | C5' | C4' | C6' | 166.6° | 61.9° |
| C4' | C5' | H5' | H5'' | 120.9° | 120.0° |
| C5' | C4' | O4' | C3' | 124.5° | 128.4° |
| C5' | C4' | O4' | C6' | 128.8° | 129.3° |
| C5' | C4' | C3' | C6' | 126.8° | 126.2° |
| C5' | C4' | O4' | C1' | 161.5° | 166.2° |
| C5' | C4' | C3' | C2' | 177.7° | 177.2° |
| C5' | C4' | C3' | O3' | 65.3° | 61.2° |
| C5' | C4' | C3' | H3' | 63.5° | 66.7° |
| C5' | C4' | C6' | O2' | 163.5° | 158.9° |
| C5' | C4' | C6' | H6'1 | 77.7° | 40.0° |
| C5' | C4' | C6' | H6'2 | 46.5° | 82.1° |
| H5' | C5' | C4' | O4' | 49.9° | 178.9° |
| H5' | C5' | C4' | C3' | 168.8° | 58.9° |
| H5' | C5' | C4' | C6' | 73.2° | 58.1° |
| H5'' | C5' | C4' | O4' | 170.5° | 59.0° |
| H5'' | C5' | C4' | C3' | 70.5° | 61.0° |
| H5'' | C5' | C4' | C6' | 47.5° | 178.0° |
| O4' | C4' | C3' | C6' | 110.7° | 106.2° |
| C4' | O4' | C1' | N1 | 123.6° | 122.3° |
| C4' | O4' | C1' | C2' | 0.1° | 3.3° |
| C4' | O4' | C1' | H1' | 111.5° | 115.7° |
| O4' | C4' | C3' | C2' | 55.2° | 55.1° |
| O4' | C4' | C3' | O3' | 172.2° | 171.2° |
| O4' | C4' | C3' | H3' | 59.0° | 60.9° |
| O4' | C4' | C6' | O2' | 71.1° | 71.8° |
| O4' | C4' | C6' | H6'1 | 47.8° | 169.2° |
| O4' | C4' | C6' | H6'2 | 171.9° | 47.1° |
| C3' | C4' | O4' | C1' | 37.0° | 37.8° |
| C4' | C3' | C2' | C1' | 53.7° | 51.1° |
| C4' | C3' | C2' | O3' | 116.5° | 116.2° |
| C4' | C3' | C2' | H3' | 114.1° | 116.1° |
| C4' | C3' | O3' | H3' | 129.5° | 128.2° |
| C4' | C3' | C2' | O2' | 57.2° | 55.1° |
| C4' | C3' | C2' | H2' | 177.1° | 177.8° |
| C3' | C4' | C6' | O2' | 38.4° | 32.1° |
| C4' | C3' | O3' | HO3' | 180.0° | 165.2° |
| C3' | C4' | C6' | H6'1 | 157.2° | 86.9° |
| C3' | C4' | C6' | H6'2 | 78.6° | 151.1° |
| C6' | C4' | O4' | C1' | 69.7° | 64.5° |
| C6' | C4' | C3' | C2' | 55.5° | 51.1° |
| C6' | C4' | C3' | O3' | 61.4° | 65.0° |
| C6' | C4' | C3' | H3' | 169.8° | 167.1° |
| C4' | C6' | O2' | C2' | 0.9° | 3.4° |
| C4' | C6' | O2' | H6'1 | 118.7° | 119.0° |
| C4' | C6' | O2' | H6'2 | 117.7° | 118.9° |
| C4' | C6' | H6'1 | H6'2 | 124.1° | 122.0° |
| O4' | C1' | N1 | C2' | 115.7° | 116.0° |
| O4' | C1' | N1 | H1' | 123.3° | 122.0° |
| O4' | C1' | C2' | H1' | 113.9° | 119.1° |
| O4' | C1' | N1 | C6 | 26.3° | 21.4° |
| O4' | C1' | N1 | C2 | 154.6° | 158.6° |
| O4' | C1' | C2' | C3' | 36.9° | 32.1° |
| O4' | C1' | C2' | O2' | 72.5° | 71.8° |
| O4' | C1' | C2' | H2' | 161.7° | 158.5° |
| N1 | C1' | C2' | H1' | 124.3° | 121.9° |
| C1' | N1 | C6 | C2 | 179.1° | 180.0° |
| C1' | N1 | C6 | C5 | 178.2° | 180.0° |
| C1' | N1 | C6 | H6 | 3.0° | 0.0° |
| C1' | N1 | C2 | N3 | 178.8° | 180.0° |
| C1' | N1 | C2 | O2 | 1.5° | 0.1° |
| N1 | C1' | C2' | C3' | 84.9° | 86.9° |
| N1 | C1' | C2' | O2' | 165.8° | 169.3° |
| N1 | C1' | C2' | H2' | 39.9° | 39.5° |
| C2' | C1' | N1 | C6 | 89.5° | 94.6° |
| C2' | C1' | N1 | C2 | 89.7° | 85.4° |
| C1' | C2' | C3' | O2' | 110.9° | 106.2° |
| C1' | C2' | C3' | H2' | 123.4° | 126.7° |
| C1' | C2' | C3' | O3' | 170.2° | 167.2° |
| C1' | C2' | C3' | H3' | 60.4° | 65.0° |
| C1' | C2' | O2' | H2' | 125.2° | 130.3° |
| C1' | C2' | O2' | C6' | 70.9° | 64.4° |
| H1' | C1' | N1 | C6 | 149.5° | 143.5° |
| H1' | C1' | N1 | C2 | 31.3° | 36.5° |
| H1' | C1' | C2' | C3' | 150.8° | 151.2° |
| H1' | C1' | C2' | O2' | 41.5° | 47.3° |
| H1' | C1' | C2' | H2' | 84.4° | 82.4° |
| N1 | C6 | C5 | H6 | 178.7° | 180.0° |
| N1 | C6 | C5 | C5M | 176.3° | 180.0° |
| N1 | C6 | C5 | C4 | 3.2° | 0.2° |
| C6 | N1 | C2 | N3 | 2.0° | 0.1° |
| C6 | N1 | C2 | O2 | 177.6° | 180.0° |
| C2 | N1 | C6 | C5 | 0.9° | 0.0° |
| C2 | N1 | C6 | H6 | 177.9° | 180.0° |
| N1 | C2 | N3 | C4 | 2.9° | 0.3° |
| N1 | C2 | N3 | O2 | 179.7° | 179.9° |
| N1 | C2 | N3 | H3 | 178.2° | 180.0° |
| C6 | C5 | C5M | C4 | 179.4° | 179.8° |
| C6 | C5 | C5M | H71 | 107.3° | 180.0° |
| C6 | C5 | C5M | H72 | 12.5° | 60.0° |
| C6 | C5 | C5M | H73 | 133.7° | 59.9° |
| C6 | C5 | C4 | O4 | 176.8° | 180.0° |
| C6 | C5 | C4 | N3 | 2.3° | 0.5° |
| H6 | C6 | C5 | C5M | 5.0° | 0.0° |
| H6 | C6 | C5 | C4 | 175.6° | 179.8° |
| C5 | C5M | H71 | H72 | 121.6° | 120.0° |
| C5 | C5M | H71 | H73 | 120.7° | 120.0° |
| C5 | C5M | H72 | H73 | 122.3° | 120.0° |
| C5M | C5 | C4 | O4 | 3.8° | 0.2° |
| C5M | C5 | C4 | N3 | 177.1° | 179.8° |
| C4 | C5 | C5M | H71 | 72.2° | 0.2° |
| C4 | C5 | C5M | H72 | 168.1° | 119.7° |
| C4 | C5 | C5M | H73 | 46.9° | 120.3° |
| C5 | C4 | O4 | N3 | 179.0° | 179.5° |
| C5 | C4 | N3 | C2 | 0.8° | 0.5° |
| C5 | C4 | N3 | H3 | 176.2° | 179.8° |
| H71 | C5M | H72 | H73 | 117.2° | 120.0° |
| O4 | C4 | N3 | C2 | 179.9° | 179.9° |
| O4 | C4 | N3 | H3 | 4.6° | 0.3° |
| C4 | N3 | C2 | H3 | 175.3° | 179.7° |
| C4 | N3 | C2 | O2 | 176.8° | 179.8° |
| H3 | N3 | C2 | O2 | 1.5° | 0.1° |
| C2' | C3' | O3' | H3' | 130.2° | 128.0° |
| C3' | C2' | O2' | H2' | 126.4° | 127.5° |
| C3' | C2' | O2' | C6' | 37.5° | 37.8° |
| C2' | C3' | O3' | HO3' | 79.7° | 61.4° |
| O3' | C3' | C2' | O2' | 59.3° | 61.1° |
| O3' | C3' | C2' | H2' | 66.4° | 66.1° |
| H3' | C3' | C2' | O2' | 171.3° | 171.2° |
| H3' | C3' | C2' | H2' | 63.0° | 61.7° |
| H3' | C3' | O3' | HO3' | 50.5° | 66.6° |
| C2' | O2' | C6' | H6'1 | 119.7° | 122.4° |
| C2' | O2' | C6' | H6'2 | 116.7° | 115.5° |
| H2' | C2' | O2' | C6' | 163.8° | 165.3° |
| O2' | C6' | H6'1 | H6'2 | 123.0° | 122.0° |
