TKW
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
NAA | CAN | sing | 1.38Å | 1.32Å | |
CAN | NAK | doub | 1.33Å | 1.34Å | |
CAN | CAO | sing | 1.41Å | 1.38Å | |
NAK | CAP | sing | 1.33Å | 1.35Å | |
OAF | PAV | doub | 1.48Å | 1.60Å | |
OAC | CAO | sing | 1.36Å | 1.35Å | |
CAO | CAI | doub | 1.36Å | 1.35Å | |
OAB | CAP | doub | 1.22Å | 1.23Å | |
CAP | NAU | sing | 1.35Å | 1.36Å | |
OAH | PAV | sing | 1.61Å | 1.58Å | |
PAV | O5' | sing | 1.61Å | 1.62Å | |
PAV | OAG | sing | 1.61Å | 1.60Å | |
CAI | NAU | sing | 1.37Å | 1.38Å | |
NAU | C1' | sing | 1.47Å | 1.50Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
O4' | C4' | sing | 1.44Å | 1.45Å | |
O4' | C1' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.54Å | 1.51Å | |
C1' | C2' | sing | 1.54Å | 1.52Å | |
C2' | C3' | sing | 1.54Å | 1.54Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.47Å | |
OAG | H1 | sing | 0.97Å | 0.95Å | |
OAH | H2 | sing | 0.97Å | 0.95Å | |
C5' | H3 | sing | 1.09Å | 1.10Å | |
C5' | H4 | sing | 1.09Å | 1.10Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C3' | H6 | sing | 1.09Å | 1.10Å | |
O3' | H7 | sing | 0.97Å | 0.95Å | |
C2' | H8 | sing | 1.09Å | 1.10Å | |
O2' | H9 | sing | 0.97Å | 0.95Å | |
C1' | H10 | sing | 1.09Å | 1.10Å | |
NAA | H11 | sing | 0.97Å | 1.00Å | |
NAA | H12 | sing | 0.97Å | 1.00Å | |
OAC | H13 | sing | 0.97Å | 0.95Å | |
CAI | H14 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
NAA | CAN | NAK | 123.7° | 120.2° |
NAA | CAN | CAO | 116.3° | 120.2° |
CAN | NAA | H11 | 120.0° | 120.0° |
CAN | NAA | H12 | 120.0° | 120.0° |
NAK | CAN | CAO | 120.0° | 119.6° |
CAN | NAK | CAP | 120.8° | 120.8° |
CAN | CAO | OAC | 117.9° | 120.5° |
CAN | CAO | CAI | 119.0° | 119.0° |
NAK | CAP | OAB | 116.7° | 119.4° |
NAK | CAP | NAU | 120.7° | 121.2° |
OAF | PAV | OAH | 113.5° | 109.5° |
OAF | PAV | O5' | 105.9° | 109.4° |
OAF | PAV | OAG | 112.1° | 109.5° |
OAC | CAO | CAI | 123.1° | 120.5° |
CAO | OAC | H13 | 109.5° | 114.0° |
CAO | CAI | NAU | 120.9° | 119.2° |
CAO | CAI | H14 | 119.6° | 120.5° |
OAB | CAP | NAU | 122.7° | 119.5° |
CAP | NAU | CAI | 118.6° | 120.4° |
CAP | NAU | C1' | 127.9° | 119.8° |
OAH | PAV | O5' | 108.1° | 109.5° |
OAH | PAV | OAG | 112.0° | 109.5° |
PAV | OAH | H2 | 109.5° | 114.0° |
O5' | PAV | OAG | 104.6° | 109.4° |
PAV | O5' | C5' | 118.6° | 123.0° |
PAV | OAG | H1 | 109.5° | 114.0° |
CAI | NAU | C1' | 113.5° | 119.9° |
NAU | CAI | H14 | 119.6° | 120.4° |
NAU | C1' | O4' | 107.1° | 110.4° |
NAU | C1' | C2' | 117.6° | 110.4° |
NAU | C1' | H10 | 108.3° | 110.4° |
O5' | C5' | C4' | 104.3° | 109.5° |
O5' | C5' | H3 | 110.7° | 109.5° |
O5' | C5' | H4 | 110.8° | 109.4° |
C5' | C4' | O4' | 108.7° | 110.4° |
C5' | C4' | C3' | 108.0° | 110.4° |
C4' | C5' | H3 | 110.7° | 109.4° |
C4' | C5' | H4 | 110.8° | 109.5° |
C5' | C4' | H5 | 110.1° | 110.3° |
C4' | O4' | C1' | 108.7° | 105.3° |
O4' | C4' | C3' | 108.4° | 104.8° |
O4' | C4' | H5 | 111.2° | 110.4° |
O4' | C1' | C2' | 106.8° | 104.8° |
O4' | C1' | H10 | 108.8° | 110.4° |
C4' | C3' | C2' | 102.9° | 104.0° |
C4' | C3' | O3' | 110.5° | 110.5° |
C3' | C4' | H5 | 110.3° | 110.4° |
C4' | C3' | H6 | 110.0° | 110.5° |
C1' | C2' | C3' | 103.3° | 104.1° |
C1' | C2' | O2' | 113.0° | 110.5° |
C1' | C2' | H8 | 110.0° | 110.6° |
C2' | C1' | H10 | 108.0° | 110.4° |
C3' | C2' | O2' | 108.6° | 110.5° |
C2' | C3' | O3' | 113.0° | 110.5° |
C2' | C3' | H6 | 109.6° | 110.6° |
C3' | C2' | H8 | 109.8° | 110.5° |
O2' | C2' | H8 | 111.7° | 110.4° |
C2' | O2' | H9 | 109.5° | 114.0° |
O3' | C3' | H6 | 110.6° | 110.5° |
C3' | O3' | H7 | 109.5° | 114.0° |
H3 | C5' | H4 | 109.5° | 109.5° |
H11 | NAA | H12 | 120.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
NAA | CAN | NAK | CAO | 179.8° | 179.9° |
NAA | CAN | NAK | CAP | 179.6° | 180.0° |
NAA | CAN | CAO | OAC | 0.2° | 0.1° |
NAA | CAN | CAO | CAI | 179.3° | 179.7° |
CAN | NAA | H11 | H12 | 180.0° | 180.0° |
NAK | CAN | CAO | OAC | 179.9° | 180.0° |
NAK | CAN | CAO | CAI | 0.6° | 0.2° |
CAN | NAK | CAP | OAB | 179.3° | 180.0° |
CAN | NAK | CAP | NAU | 1.0° | 0.1° |
NAK | CAN | NAA | H11 | 0.0° | 0.0° |
NAK | CAN | NAA | H12 | 180.0° | 179.9° |
CAO | CAN | NAK | CAP | 0.3° | 0.1° |
CAN | CAO | OAC | CAI | 179.5° | 179.7° |
CAN | CAO | CAI | NAU | 1.5° | 0.5° |
CAO | CAN | NAA | H11 | 179.9° | 179.9° |
CAO | CAN | NAA | H12 | 0.2° | 0.0° |
CAN | CAO | OAC | H13 | 180.0° | 0.1° |
CAN | CAO | CAI | H14 | 178.5° | 180.0° |
NAK | CAP | OAB | NAU | 179.7° | 180.0° |
NAK | CAP | NAU | CAI | 1.9° | 0.3° |
NAK | CAP | NAU | C1' | 178.5° | 180.0° |
OAF | PAV | OAH | O5' | 117.1° | 120.0° |
OAF | PAV | OAH | OAG | 128.2° | 120.0° |
OAF | PAV | O5' | OAG | 118.6° | 120.0° |
OAF | PAV | O5' | C5' | 103.2° | 55.0° |
OAF | PAV | OAG | H1 | 0.0° | 180.0° |
OAF | PAV | OAH | H2 | 0.0° | 60.0° |
OAC | CAO | CAI | NAU | 179.0° | 179.7° |
OAC | CAO | CAI | H14 | 1.0° | 0.3° |
CAO | CAI | NAU | CAP | 2.2° | 0.5° |
CAO | CAI | NAU | H14 | 180.0° | 179.5° |
CAO | CAI | NAU | C1' | 179.3° | 179.8° |
CAI | CAO | OAC | H13 | 0.5° | 179.7° |
OAB | CAP | NAU | CAI | 178.4° | 179.7° |
OAB | CAP | NAU | C1' | 1.8° | 0.0° |
CAP | NAU | CAI | C1' | 177.1° | 179.7° |
CAP | NAU | C1' | O4' | 64.5° | 53.6° |
CAP | NAU | C1' | C2' | 55.6° | 61.8° |
CAP | NAU | C1' | H10 | 178.3° | 175.8° |
CAP | NAU | CAI | H14 | 177.8° | 180.0° |
OAH | PAV | O5' | OAG | 119.5° | 120.0° |
OAH | PAV | O5' | C5' | 18.8° | 175.0° |
OAH | PAV | OAG | H1 | 128.9° | 59.9° |
PAV | O5' | C5' | C4' | 176.0° | 180.0° |
O5' | PAV | OAG | H1 | 114.3° | 60.1° |
O5' | PAV | OAH | H2 | 117.1° | 180.0° |
PAV | O5' | C5' | H3 | 64.9° | 60.0° |
PAV | O5' | C5' | H4 | 56.8° | 60.0° |
OAG | PAV | O5' | C5' | 138.3° | 65.0° |
OAG | PAV | OAH | H2 | 128.2° | 60.0° |
CAI | NAU | C1' | O4' | 112.3° | 126.7° |
CAI | NAU | C1' | C2' | 127.6° | 117.9° |
CAI | NAU | C1' | H10 | 4.9° | 4.5° |
NAU | C1' | O4' | C4' | 137.3° | 159.4° |
NAU | C1' | O4' | C2' | 126.7° | 118.9° |
NAU | C1' | O4' | H10 | 116.9° | 122.3° |
NAU | C1' | C2' | H10 | 122.9° | 122.3° |
NAU | C1' | C2' | C3' | 146.3° | 142.8° |
NAU | C1' | C2' | O2' | 96.5° | 98.5° |
NAU | C1' | C2' | H8 | 29.1° | 24.1° |
C1' | NAU | CAI | H14 | 0.7° | 0.3° |
O5' | C5' | C4' | H3 | 119.1° | 120.0° |
O5' | C5' | C4' | H4 | 119.2° | 120.0° |
O5' | C5' | C4' | O4' | 152.3° | 69.6° |
O5' | C5' | C4' | C3' | 90.2° | 175.0° |
O5' | C5' | H3 | H4 | 122.4° | 120.0° |
O5' | C5' | C4' | H5 | 30.2° | 52.7° |
C5' | C4' | O4' | C3' | 117.2° | 118.9° |
C5' | C4' | O4' | H5 | 121.4° | 122.2° |
C5' | C4' | O4' | C1' | 107.2° | 159.4° |
C5' | C4' | C3' | H5 | 120.4° | 122.2° |
C5' | C4' | C3' | C2' | 91.8° | 142.8° |
C5' | C4' | C3' | O3' | 147.3° | 98.5° |
C4' | C5' | H3 | H4 | 122.4° | 120.0° |
C5' | C4' | C3' | H6 | 24.9° | 24.1° |
O4' | C4' | C3' | H5 | 122.0° | 118.9° |
C4' | O4' | C1' | C2' | 10.5° | 40.5° |
O4' | C4' | C3' | C2' | 25.9° | 24.0° |
O4' | C4' | C3' | O3' | 95.1° | 142.6° |
O4' | C4' | C5' | H3 | 33.2° | 50.4° |
O4' | C4' | C5' | H4 | 88.5° | 170.4° |
O4' | C4' | C3' | H6 | 142.6° | 94.8° |
C4' | O4' | C1' | H10 | 105.8° | 78.4° |
C1' | O4' | C4' | C3' | 10.0° | 40.5° |
O4' | C1' | C2' | H10 | 116.9° | 118.8° |
O4' | C1' | C2' | C3' | 26.1° | 24.0° |
O4' | C1' | C2' | O2' | 143.2° | 142.7° |
C1' | O4' | C4' | H5 | 131.4° | 78.4° |
O4' | C1' | C2' | H8 | 91.1° | 94.7° |
C4' | C3' | C2' | C1' | 31.1° | 0.0° |
C4' | C3' | C2' | O3' | 119.2° | 118.7° |
C4' | C3' | C2' | H6 | 117.0° | 118.6° |
C4' | C3' | C2' | O2' | 151.2° | 118.7° |
C4' | C3' | O3' | H6 | 122.0° | 122.6° |
C3' | C4' | C5' | H3 | 150.6° | 65.0° |
C3' | C4' | C5' | H4 | 28.9° | 55.0° |
C4' | C3' | O3' | H7 | 180.0° | 180.0° |
C4' | C3' | C2' | H8 | 86.3° | 118.7° |
C1' | C2' | C3' | O2' | 120.2° | 118.7° |
C1' | C2' | C3' | H8 | 117.4° | 118.8° |
C1' | C2' | O2' | H8 | 124.7° | 122.7° |
C1' | C2' | C3' | O3' | 88.2° | 118.6° |
C1' | C2' | C3' | H6 | 148.1° | 118.7° |
C1' | C2' | O2' | H9 | 180.0° | 176.1° |
C3' | C2' | O2' | H8 | 121.3° | 122.6° |
C2' | C3' | O3' | H6 | 123.2° | 122.8° |
C2' | C3' | C4' | H5 | 147.9° | 95.0° |
C2' | C3' | O3' | H7 | 65.3° | 65.4° |
C3' | C2' | O2' | H9 | 66.1° | 61.4° |
C3' | C2' | C1' | H10 | 90.8° | 94.8° |
O2' | C2' | C3' | O3' | 32.0° | 0.1° |
O2' | C2' | C3' | H6 | 91.8° | 122.7° |
O2' | C2' | C1' | H10 | 26.3° | 23.8° |
O3' | C3' | C4' | H5 | 26.9° | 23.7° |
O3' | C3' | C2' | H8 | 154.5° | 122.6° |
H3 | C5' | C4' | H5 | 88.9° | 172.7° |
H4 | C5' | C4' | H5 | 149.4° | 67.3° |
H5 | C4' | C3' | H6 | 95.4° | 146.3° |
H6 | C3' | O3' | H7 | 57.9° | 57.4° |
H6 | C3' | C2' | H8 | 30.7° | 0.1° |
H8 | C2' | O2' | H9 | 55.3° | 61.2° |
H8 | C2' | C1' | H10 | 152.0° | 146.5° |