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SummaryGeometryPCM/PTMRelated PDB entries

TIL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O2ACGAsing1.33Å1.25Å
O2AH2Asing0.88Å0.95Å
CGAO1Adoub1.22Å1.25Å
CGACBAsing1.50Å1.52Å
CBACAAsing1.53Å1.52Å
CBAHBA1sing0.97Å1.10Å
CBAHBA2sing0.97Å1.10Å
CAACC5sing1.51Å1.51Å
CAAHAA1sing0.98Å1.10Å
CAAHAA2sing0.98Å1.10Å
CC5CC4sing1.40Å1.40ÅAromatic
CC5CC6doub1.39Å1.40ÅAromatic
CC6CC1sing1.49Å1.39ÅAromatic
CC6HC6sing0.95Å1.08Å
CC1CC2doub1.39Å1.36ÅAromatic
CC1OAsing1.27Å1.37Å
CC2CC3sing1.39Å1.41ÅAromatic
CC2NBsing1.41Å1.38Å
CC3CC4doub1.39Å1.41ÅAromatic
CC3HC3sing0.94Å1.08Å
CC4HC4sing0.94Å1.08Å
OACRsing1.98Å1.86Å
CROBsing2.00Å1.84Å
CRNBsing2.00Å1.86Å
NBCBdoub1.26Å1.27Å
OBCB2sing1.27Å1.36Å
CB2CB3doub1.42Å1.40ÅAromatic
CB2CB1sing1.39Å1.39ÅAromatic
CB1CB6doub1.40Å1.41ÅAromatic
CB1CBsing1.44Å1.47Å
CBHBsing0.94Å1.08Å
CB3CB4sing1.39Å1.40ÅAromatic
CB3HB3sing0.94Å1.08Å
CB4CB5doub1.38Å1.40ÅAromatic
CB4HB4sing0.94Å1.08Å
CB5CB6sing1.38Å1.40ÅAromatic
CB5HB5sing0.94Å1.08Å
CB6HB6sing0.94Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CGAO2AH2A109.5°117.5°
O2ACGAO1A121.0°122.1°
O2ACGACBA120.0°115.4°
O1ACGACBA119.0°122.5°
CGACBACAA107.7°114.9°
CGACBAHBA1110.1°108.2°
CGACBAHBA2110.5°108.9°
CAACBAHBA1110.0°108.7°
CAACBAHBA2110.4°109.2°
CBACAACC5112.8°114.9°
CBACAAHAA1108.4°108.8°
CBACAAHAA2107.6°108.5°
HBA1CBAHBA2108.1°106.6°
CC5CAAHAA1108.4°108.8°
CC5CAAHAA2107.6°109.0°
CAACC5CC4120.3°121.1°
CAACC5CC6118.8°120.3°
HAA1CAAHAA2112.1°106.5°
CC4CC5CC6120.9°118.6°
CC5CC4CC3119.3°122.3°
CC5CC4HC4120.3°118.9°
CC5CC6CC1118.7°119.6°
CC5CC6HC6120.6°120.4°
CC1CC6HC6120.7°120.0°
CC6CC1CC2121.7°118.4°
CC6CC1OA126.8°123.5°
CC2CC1OA111.5°117.9°
CC1CC2CC3120.7°120.5°
CC1CC2NB110.8°109.3°
CC1OACR117.7°111.7°
CC3CC2NB128.4°130.2°
CC2CC3CC4118.7°120.5°
CC2CC3HC3120.7°119.6°
CC2NBCR117.3°109.5°
CC2NBCB115.0°137.2°
CC4CC3HC3120.7°119.9°
CC3CC4HC4120.4°118.8°
OACROB169.0°172.6°
OACRNB78.5°76.3°
OBCRNB92.1°98.4°
CROBCB2129.2°106.8°
CRNBCB127.7°94.9°
NBCBCB1125.9°119.2°
NBCBHB117.1°120.7°
OBCB2CB3119.1°127.4°
OBCB2CB1122.1°114.4°
CB3CB2CB1118.8°116.7°
CB2CB3CB4121.1°120.8°
CB2CB3HB3119.5°119.2°
CB2CB1CB6120.9°121.4°
CB2CB1CB120.2°113.4°
CB6CB1CB118.9°123.8°
CB1CB6CB5119.6°119.7°
CB1CB6HB6120.2°119.9°
CB1CBHB117.0°120.1°
CB4CB3HB3119.4°119.9°
CB3CB4CB5119.8°120.8°
CB3CB4HB4120.1°119.3°
CB5CB4HB4120.1°119.8°
CB4CB5CB6119.8°119.5°
CB4CB5HB5120.1°120.3°
CB6CB5HB5120.1°120.2°
CB5CB6HB6120.2°120.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O2ACGAO1ACBA179.1°179.9°
O2ACGACBACAA126.3°87.8°
O2ACGACBAHBA1113.7°150.6°
O2ACGACBAHBA25.6°35.1°
H2AO2ACGAO1A0.0°180.0°
H2AO2ACGACBA179.1°0.1°
O1ACGACBACAA52.9°92.1°
O1ACGACBAHBA167.1°29.5°
O1ACGACBAHBA2173.5°145.0°
CGACBACAAHBA1120.0°121.4°
CGACBACAAHBA2120.7°122.7°
CGACBAHBA1HBA2120.8°117.0°
CGACBACAACC5177.1°92.0°
CGACBACAAHAA157.1°30.2°
CGACBACAAHAA264.4°145.7°
CAACBAHBA1HBA2120.7°117.6°
CBACAACC5HAA1120.0°122.3°
CBACAACC5HAA2118.6°122.0°
CBACAAHAA1HAA2118.7°116.8°
CBACAACC5CC496.6°84.9°
CBACAACC5CC684.7°95.6°
HBA1CBACAACC562.9°146.6°
HBA1CBACAAHAA1177.1°91.1°
HBA1CBACAAHAA255.6°24.4°
HBA2CBACAACC556.4°30.7°
HBA2CBACAAHAA163.6°152.9°
HBA2CBACAAHAA2174.9°91.6°
CC5CAAHAA1HAA2118.6°117.3°
CAACC5CC4CC6178.6°179.6°
CAACC5CC6CC1179.2°179.4°
CAACC5CC6HC60.8°0.1°
CAACC5CC4CC3179.9°180.0°
CAACC5CC4HC40.1°0.5°
HAA1CAACC5CC423.3°37.4°
HAA1CAACC5CC6155.3°142.2°
HAA2CAACC5CC4144.8°153.1°
HAA2CAACC5CC633.8°26.5°
CC4CC5CC6CC10.6°1.0°
CC4CC5CC6HC6179.4°179.7°
CC5CC4CC3CC22.2°1.2°
CC5CC4CC3HC4180.0°179.5°
CC5CC4CC3HC3177.8°179.8°
CC5CC6CC1HC6180.0°179.3°
CC5CC6CC1CC20.5°2.4°
CC5CC6CC1OA178.9°178.4°
CC6CC5CC4CC31.5°0.4°
CC6CC5CC4HC4178.5°179.9°
CC6CC1CC2OA179.5°176.2°
CC6CC1CC2CC31.4°3.2°
CC6CC1CC2NB179.6°179.9°
CC6CC1OACR164.5°151.1°
HC6CC6CC1CC2179.5°178.3°
HC6CC6CC1OA1.1°2.3°
CC1CC2CC3NB178.0°175.9°
CC1CC2CC3CC42.2°2.7°
CC1CC2CC3HC3177.8°178.3°
CC2CC1OACR15.0°24.9°
CC1CC2NBCR15.0°30.2°
CC1CC2NBCB162.1°151.4°
OACC1CC2CC3178.2°179.4°
OACC1CC2NB0.1°3.9°
CC1OACROB49.8°12.7°
CC1OACRNB18.2°32.2°
CC2CC3CC4HC3180.0°179.0°
CC2CC3CC4HC4177.8°179.3°
CC3CC2NBCR163.1°153.5°
CC3CC2NBCB19.8°32.4°
NBCC2CC3CC4179.9°178.5°
NBCC2CC3HC30.1°2.5°
CC2NBCROA18.2°33.5°
CC2NBCROB167.6°141.2°
CC2NBCRCB176.7°144.3°
CC2NBCBCB1174.4°171.9°
CC2NBCBHB5.6°8.1°
HC3CC3CC4HC42.2°0.3°
OACROBNB31.0°43.8°
OACRNBCB158.5°177.8°
OACROBCB212.2°101.3°
OBCRNBCB15.7°3.0°
CROBCB2CB3167.0°120.1°
CROBCB2CB114.5°45.7°
NBCROBCB218.7°57.4°
CRNBCBCB18.8°62.2°
CRNBCBHB171.2°117.8°
NBCBCB1CB21.7°95.4°
NBCBCB1CB6177.1°97.7°
NBCBCB1HB180.0°180.0°
OBCB2CB3CB1178.6°165.5°
OBCB2CB1CB6179.8°179.2°
OBCB2CB1CB0.9°13.6°
OBCB2CB3CB4179.9°174.1°
OBCB2CB3HB30.1°8.9°
CB3CB2CB1CB61.7°11.9°
CB3CB2CB1CB179.5°179.0°
CB2CB3CB4HB3180.0°176.9°
CB2CB3CB4CB50.5°3.0°
CB2CB3CB4HB4179.5°177.1°
CB2CB1CB6CB178.9°165.8°
CB2CB1CBHB178.2°84.6°
CB1CB2CB3CB41.2°8.6°
CB1CB2CB3HB3178.8°174.4°
CB2CB1CB6CB51.4°9.4°
CB2CB1CB6HB6178.6°174.1°
CB6CB1CBHB2.9°82.2°
CB1CB6CB5CB40.6°3.2°
CB1CB6CB5HB6180.0°176.4°
CB1CB6CB5HB5179.4°176.8°
CBCB1CB6CB5179.7°175.2°
CBCB1CB6HB60.3°8.3°
CB3CB4CB5HB4180.0°180.0°
CB3CB4CB5CB60.2°0.1°
CB3CB4CB5HB5179.8°179.9°
HB3CB3CB4CB5179.5°179.9°
HB3CB3CB4HB40.5°0.1°
CB4CB5CB6HB5180.0°180.0°
CB4CB5CB6HB6179.4°179.7°
HB4CB4CB5CB6179.8°179.9°
HB4CB4CB5HB50.2°0.1°
HB5CB5CB6HB60.7°0.3°

260320

PDB entries from 2026-09-30

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