Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N1 | C1 | doub | 1.31Å | 1.38Å | Aromatic |
N1 | C3 | sing | 1.32Å | 1.47Å | Aromatic |
C1 | S1 | sing | 1.74Å | 1.77Å | Aromatic |
C1 | H11 | sing | 1.08Å | 1.10Å | |
S1 | C2 | sing | 1.79Å | 1.74Å | Aromatic |
C2 | C3 | doub | 1.36Å | 1.37Å | Aromatic |
C2 | C4 | sing | 1.51Å | 1.50Å | |
C3 | CM3 | sing | 1.51Å | 1.53Å | |
CM3 | HM31 | sing | 1.09Å | 1.11Å | |
CM3 | HM32 | sing | 1.09Å | 1.11Å | |
CM3 | HM33 | sing | 1.09Å | 1.11Å | |
C4 | C5 | sing | 1.53Å | 1.54Å | |
C4 | HC41 | sing | 1.09Å | 1.12Å | |
C4 | HC42 | sing | 1.09Å | 1.11Å | |
C5 | O7 | sing | 1.43Å | 1.42Å | |
C5 | HC51 | sing | 1.09Å | 1.11Å | |
C5 | HC52 | sing | 1.09Å | 1.12Å | |
O7 | P | sing | 1.61Å | 1.43Å | |
P | O8 | doub | 1.48Å | 1.49Å | |
P | O9 | sing | 1.61Å | 1.46Å | |
P | O10 | sing | 1.61Å | 1.68Å | |
O9 | H91 | sing | 0.97Å | 0.95Å | |
O10 | H101 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C1 | N1 | C3 | 114.8° | 121.4° |
N1 | C1 | S1 | 110.9° | 102.2° |
N1 | C1 | H11 | 114.5° | 128.9° |
N1 | C3 | C2 | 108.6° | 118.4° |
N1 | C3 | CM3 | 122.3° | 120.8° |
S1 | C1 | H11 | 134.6° | 128.9° |
C1 | S1 | C2 | 90.0° | 97.4° |
S1 | C2 | C3 | 115.7° | 100.6° |
S1 | C2 | C4 | 112.7° | 129.6° |
C3 | C2 | C4 | 131.6° | 129.8° |
C2 | C3 | CM3 | 129.1° | 120.8° |
C2 | C4 | C5 | 113.5° | 109.4° |
C2 | C4 | HC41 | 110.7° | 109.5° |
C2 | C4 | HC42 | 110.7° | 109.4° |
C3 | CM3 | HM31 | 122.3° | 109.4° |
C3 | CM3 | HM32 | 107.6° | 109.4° |
C3 | CM3 | HM33 | 107.6° | 109.5° |
HM31 | CM3 | HM32 | 107.7° | 109.4° |
HM31 | CM3 | HM33 | 107.7° | 109.5° |
HM32 | CM3 | HM33 | 102.2° | 109.5° |
C5 | C4 | HC41 | 110.7° | 109.5° |
C5 | C4 | HC42 | 110.8° | 109.4° |
C4 | C5 | O7 | 104.3° | 109.4° |
C4 | C5 | HC51 | 114.2° | 109.5° |
C4 | C5 | HC52 | 114.1° | 109.4° |
HC41 | C4 | HC42 | 99.6° | 109.5° |
O7 | C5 | HC51 | 114.2° | 109.5° |
O7 | C5 | HC52 | 114.2° | 109.4° |
C5 | O7 | P | 137.9° | 106.8° |
HC51 | C5 | HC52 | 96.3° | 109.6° |
O7 | P | O8 | 111.9° | 109.5° |
O7 | P | O9 | 105.6° | 109.5° |
O7 | P | O10 | 116.7° | 109.5° |
O8 | P | O9 | 110.9° | 109.4° |
O8 | P | O10 | 110.8° | 109.5° |
O9 | P | O10 | 100.2° | 109.5° |
P | O9 | H91 | 105.6° | 106.9° |
P | O10 | H101 | 116.7° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N1 | C1 | S1 | H11 | 180.0° | 179.9° |
N1 | C1 | S1 | C2 | 0.2° | 0.2° |
C1 | N1 | C3 | C2 | 0.1° | 0.3° |
C1 | N1 | C3 | CM3 | 179.9° | 180.0° |
C3 | N1 | C1 | S1 | 0.2° | 0.0° |
C3 | N1 | C1 | H11 | 179.9° | 179.9° |
N1 | C3 | C2 | S1 | 0.1° | 0.4° |
N1 | C3 | C2 | CM3 | 179.8° | 179.7° |
N1 | C3 | C2 | C4 | 179.9° | 179.9° |
N1 | C3 | CM3 | HM31 | 180.0° | 90.1° |
N1 | C3 | CM3 | HM32 | 54.7° | 150.0° |
N1 | C3 | CM3 | HM33 | 54.7° | 29.9° |
C1 | S1 | C2 | C3 | 0.1° | 0.4° |
C1 | S1 | C2 | C4 | 179.8° | 180.0° |
H11 | C1 | S1 | C2 | 179.9° | 179.9° |
S1 | C2 | C3 | C4 | 179.9° | 179.7° |
S1 | C2 | C3 | CM3 | 179.7° | 179.9° |
S1 | C2 | C4 | C5 | 61.7° | 90.1° |
S1 | C2 | C4 | HC41 | 63.6° | 30.0° |
S1 | C2 | C4 | HC42 | 173.0° | 150.0° |
C2 | C3 | CM3 | HM31 | 0.2° | 90.2° |
C2 | C3 | CM3 | HM32 | 125.0° | 29.7° |
C2 | C3 | CM3 | HM33 | 125.5° | 149.8° |
C3 | C2 | C4 | C5 | 118.3° | 89.5° |
C3 | C2 | C4 | HC41 | 116.5° | 150.4° |
C3 | C2 | C4 | HC42 | 7.0° | 30.4° |
C4 | C2 | C3 | CM3 | 0.3° | 0.2° |
C2 | C4 | C5 | HC41 | 125.2° | 120.0° |
C2 | C4 | C5 | HC42 | 125.3° | 119.9° |
C2 | C4 | HC41 | HC42 | 116.6° | 120.0° |
C2 | C4 | C5 | O7 | 154.4° | 180.0° |
C2 | C4 | C5 | HC51 | 29.2° | 60.0° |
C2 | C4 | C5 | HC52 | 80.3° | 60.1° |
C3 | CM3 | HM31 | HM32 | 125.2° | 119.9° |
C3 | CM3 | HM31 | HM33 | 125.3° | 120.0° |
C3 | CM3 | HM32 | HM33 | 113.2° | 120.0° |
HM31 | CM3 | HM32 | HM33 | 113.2° | 120.1° |
C5 | C4 | HC41 | HC42 | 116.6° | 120.0° |
C4 | C5 | O7 | HC51 | 125.3° | 120.0° |
C4 | C5 | O7 | HC52 | 125.3° | 119.9° |
C4 | C5 | HC51 | HC52 | 120.0° | 120.0° |
C4 | C5 | O7 | P | 179.8° | 180.0° |
HC41 | C4 | C5 | O7 | 80.3° | 60.0° |
HC41 | C4 | C5 | HC51 | 154.4° | 180.0° |
HC41 | C4 | C5 | HC52 | 45.0° | 59.9° |
HC42 | C4 | C5 | O7 | 29.2° | 60.0° |
HC42 | C4 | C5 | HC51 | 96.1° | 60.0° |
HC42 | C4 | C5 | HC52 | 154.5° | 179.9° |
O7 | C5 | HC51 | HC52 | 120.1° | 120.0° |
C5 | O7 | P | O8 | 146.0° | 60.0° |
C5 | O7 | P | O9 | 25.2° | 180.0° |
C5 | O7 | P | O10 | 85.0° | 60.0° |
HC51 | C5 | O7 | P | 54.9° | 60.0° |
HC52 | C5 | O7 | P | 54.6° | 60.1° |
O7 | P | O8 | O9 | 117.6° | 120.0° |
O7 | P | O8 | O10 | 132.0° | 120.0° |
O7 | P | O9 | O10 | 121.6° | 120.1° |
O7 | P | O9 | H91 | 180.0° | 180.0° |
O7 | P | O10 | H101 | 180.0° | 60.0° |
O8 | P | O9 | O10 | 117.1° | 120.0° |
O8 | P | O9 | H91 | 58.7° | 60.0° |
O8 | P | O10 | H101 | 50.5° | 180.0° |
O9 | P | O10 | H101 | 66.7° | 60.1° |
O10 | P | O9 | H91 | 58.4° | 59.9° |