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Summary Geometry Related PDB entries

THO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.49Å
N	H	sing	1.01Å	1.03Å
N	H2	sing	1.01Å	1.02Å
CA	CB	sing	1.53Å	1.56Å
CA	C	sing	1.53Å	1.55Å
CA	HA	sing	1.09Å	1.11Å
CB	CG2	sing	1.53Å	1.54Å
CB	OG1	sing	1.43Å	1.43Å
CB	HB	sing	1.09Å	1.11Å
CG2	HG21	sing	1.09Å	1.11Å
CG2	HG22	sing	1.09Å	1.11Å
CG2	HG23	sing	1.09Å	1.11Å
OG1	HG1	sing	0.97Å	0.98Å
C	O	sing	1.43Å	1.43Å
C	HC1	sing	1.09Å	1.11Å
C	HC2	sing	1.09Å	1.10Å
O	HO	sing	0.97Å	0.98Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	122.1°	106.7°
CA	N	H2	111.6°	106.6°
N	CA	CB	111.3°	109.5°
N	CA	C	106.9°	109.5°
N	CA	HA	109.6°	109.4°
H	N	H2	125.6°	106.7°
CB	CA	C	113.5°	109.5°
CB	CA	HA	108.1°	109.5°
CA	CB	CG2	115.9°	109.5°
CA	CB	OG1	109.9°	109.5°
CA	CB	HB	109.1°	109.5°
C	CA	HA	107.4°	109.4°
CA	C	O	112.2°	109.5°
CA	C	HC1	111.7°	109.4°
CA	C	HC2	110.2°	109.5°
CG2	CB	OG1	104.7°	109.5°
CG2	CB	HB	108.5°	109.5°
CB	CG2	HG21	111.0°	109.5°
CB	CG2	HG22	112.5°	109.5°
CB	CG2	HG23	111.7°	109.5°
OG1	CB	HB	108.4°	109.5°
CB	OG1	HG1	106.1°	106.8°
HG21	CG2	HG22	106.5°	109.5°
HG21	CG2	HG23	107.0°	109.5°
HG22	CG2	HG23	107.8°	109.5°
O	C	HC1	110.4°	109.4°
O	C	HC2	106.9°	109.5°
C	O	HO	108.3°	106.9°
HC1	C	HC2	105.1°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	H2	169.6°	113.7°
N	CA	CB	C	120.6°	120.1°
N	CA	CB	HA	120.4°	120.0°
N	CA	C	HA	117.5°	119.9°
N	CA	CB	CG2	179.4°	59.9°
N	CA	CB	OG1	62.1°	60.0°
N	CA	CB	HB	56.6°	180.0°
N	CA	C	O	68.3°	60.0°
N	CA	C	HC1	56.3°	179.9°
N	CA	C	HC2	172.7°	60.1°
H	N	CA	CB	116.2°	53.8°
H	N	CA	C	8.2°	173.9°
H	N	CA	HA	124.3°	66.2°
H2	N	CA	CB	54.7°	60.0°
H2	N	CA	C	179.2°	60.1°
H2	N	CA	HA	64.8°	180.0°
CB	CA	C	HA	119.5°	120.0°
CA	CB	CG2	OG1	121.3°	120.0°
CA	CB	CG2	HB	123.1°	120.0°
CA	CB	OG1	HB	119.1°	120.0°
CA	CB	CG2	HG21	174.4°	180.0°
CA	CB	CG2	HG22	66.4°	60.1°
CA	CB	CG2	HG23	55.1°	60.0°
CA	CB	OG1	HG1	14.2°	60.0°
CB	CA	C	O	168.6°	180.0°
CB	CA	C	HC1	66.8°	60.0°
CB	CA	C	HC2	49.6°	60.0°
C	CA	CB	CG2	58.8°	180.0°
C	CA	CB	OG1	177.3°	60.0°
C	CA	CB	HB	64.0°	60.0°
CA	C	O	HC1	125.3°	120.0°
CA	C	O	HC2	120.9°	120.0°
CA	C	HC1	HC2	119.5°	120.0°
CA	C	O	HO	79.3°	180.0°
HA	CA	CB	CG2	60.2°	60.1°
HA	CA	CB	OG1	58.3°	180.0°
HA	CA	CB	HB	177.0°	60.0°
HA	CA	C	O	49.2°	60.0°
HA	CA	C	HC1	173.7°	60.0°
HA	CA	C	HC2	69.8°	180.0°
CG2	CB	OG1	HB	115.7°	120.0°
CB	CG2	HG21	HG22	122.8°	120.0°
CB	CG2	HG21	HG23	122.1°	120.0°
CB	CG2	HG22	HG23	123.7°	120.0°
CG2	CB	OG1	HG1	139.4°	60.0°
OG1	CB	CG2	HG21	53.1°	60.0°
OG1	CB	CG2	HG22	172.4°	180.0°
OG1	CB	CG2	HG23	66.2°	60.0°
HB	CB	CG2	HG21	62.5°	60.0°
HB	CB	CG2	HG22	56.7°	60.0°
HB	CB	CG2	HG23	178.2°	NaN°
HB	CB	OG1	HG1	104.9°	180.0°
HG21	CG2	HG22	HG23	114.5°	120.0°
O	C	HC1	HC2	115.0°	120.0°
HC1	C	O	HO	45.9°	60.0°
HC2	C	O	HO	159.8°	60.0°

222415

PDB entries from 2024-07-10

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