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Summary Geometry Related PDB entries

THE

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.56Å
C1	O1	sing	1.43Å	1.42Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.12Å
C2	C3	sing	1.53Å	1.60Å
C2	O2	sing	1.43Å	1.49Å
C2	H2	sing	1.09Å	1.11Å
C3	C4	sing	1.51Å	1.49Å
C3	O3	sing	1.43Å	1.46Å
C3	H3	sing	1.09Å	1.12Å
C4	O4	doub	1.27Å	1.20Å
C4	O5	sing	1.28Å	1.22Å
O1	HO1	sing	0.97Å	0.95Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	106.9°	109.5°
C2	C1	H11	113.2°	109.5°
C2	C1	H12	113.2°	109.5°
C1	C2	C3	109.9°	109.4°
C1	C2	O2	100.5°	109.5°
C1	C2	H2	115.2°	109.4°
O1	C1	H11	113.2°	109.4°
O1	C1	H12	113.1°	109.5°
C1	O1	HO1	106.9°	106.8°
H11	C1	H12	97.3°	109.5°
C3	C2	O2	110.7°	109.5°
C3	C2	H2	105.9°	109.5°
C2	C3	C4	104.8°	109.5°
C2	C3	O3	115.4°	109.5°
C2	C3	H3	111.2°	109.5°
O2	C2	H2	114.5°	109.5°
C2	O2	HO2	100.5°	106.8°
C4	C3	O3	116.0°	109.5°
C4	C3	H3	110.7°	109.5°
C3	C4	O4	122.7°	120.0°
C3	C4	O5	133.1°	120.0°
O3	C3	H3	98.8°	109.5°
C3	O3	HO3	115.4°	106.8°
O4	C4	O5	103.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	H11	125.3°	120.0°
C2	C1	O1	H12	125.3°	120.1°
C2	C1	H11	H12	119.2°	120.1°
C1	C2	C3	O2	110.2°	120.0°
C1	C2	C3	H2	125.1°	120.0°
C1	C2	O2	H2	124.2°	120.0°
C1	C2	C3	C4	166.3°	175.0°
C1	C2	C3	O3	64.9°	55.0°
C1	C2	C3	H3	46.6°	65.0°
C2	C1	O1	HO1	180.0°	180.0°
C1	C2	O2	HO2	180.0°	60.0°
O1	C1	H11	H12	119.0°	119.9°
O1	C1	C2	C3	66.7°	175.0°
O1	C1	C2	O2	176.6°	65.0°
O1	C1	C2	H2	52.9°	55.0°
H11	C1	C2	C3	58.6°	65.0°
H11	C1	C2	O2	58.2°	55.0°
H11	C1	C2	H2	178.1°	175.0°
H11	C1	O1	HO1	54.7°	60.0°
H12	C1	C2	C3	168.1°	55.0°
H12	C1	C2	O2	51.3°	175.0°
H12	C1	C2	H2	72.4°	65.0°
H12	C1	O1	HO1	54.7°	59.9°
C3	C2	O2	H2	119.7°	120.0°
C2	C3	C4	O3	128.5°	120.0°
C2	C3	C4	H3	120.0°	120.0°
C2	C3	O3	H3	118.6°	120.0°
C2	C3	C4	O4	47.2°	115.0°
C2	C3	C4	O5	147.2°	64.9°
C3	C2	O2	HO2	63.9°	60.0°
C2	C3	O3	HO3	180.0°	60.0°
O2	C2	C3	C4	83.6°	55.0°
O2	C2	C3	O3	45.3°	65.0°
O2	C2	C3	H3	156.8°	175.0°
H2	C2	C3	C4	41.2°	65.0°
H2	C2	C3	O3	170.0°	175.0°
H2	C2	C3	H3	78.5°	55.0°
H2	C2	O2	HO2	55.8°	180.0°
C4	C3	O3	H3	118.2°	120.0°
C3	C4	O4	O5	169.3°	179.9°
C4	C3	O3	HO3	56.9°	60.1°
O3	C3	C4	O4	81.4°	5.0°
O3	C3	C4	O5	84.2°	175.0°
H3	C3	C4	O4	167.2°	125.0°
H3	C3	C4	O5	27.2°	55.1°
H3	C3	O3	HO3	61.3°	180.0°

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