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Summary Geometry Related PDB entries

TEZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N13	S12	sing	1.56Å	1.69Å	Aromatic
N13	C08	doub	1.32Å	1.37Å	Aromatic
S12	N11	sing	1.55Å	1.69Å	Aromatic
C07	C08	sing	1.42Å	1.43Å	Aromatic
C07	C06	doub	1.35Å	1.40Å	Aromatic
C08	C09	sing	1.46Å	1.37Å	Aromatic
C06	C05	sing	1.40Å	1.40Å	Aromatic
C09	N11	doub	1.32Å	1.36Å	Aromatic
C09	C10	sing	1.42Å	1.43Å	Aromatic
C05	C10	doub	1.36Å	1.39Å	Aromatic
C05	N04	sing	1.40Å	1.46Å
N04	C02	sing	1.35Å	1.46Å
C02	O03	doub	1.21Å	1.19Å
C02	C01	sing	1.51Å	1.53Å
C10	H1	sing	1.08Å	1.08Å
C01	H2	sing	1.09Å	1.10Å
C01	H3	sing	1.09Å	1.10Å
C01	H4	sing	1.09Å	1.10Å
C06	H5	sing	1.08Å	1.08Å
C07	H6	sing	1.08Å	1.08Å
N04	H7	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S12	N13	C08	103.9°	109.5°
N13	S12	N11	98.8°	100.2°
N13	C08	C07	123.0°	130.9°
N13	C08	C09	117.1°	110.4°
S12	N11	C09	105.2°	109.4°
C08	C07	C06	119.8°	120.0°
C07	C08	C09	120.0°	118.6°
C08	C07	H6	120.1°	120.0°
C07	C06	C05	120.5°	121.5°
C07	C06	H5	119.7°	119.3°
C06	C07	H6	120.1°	120.0°
C08	C09	N11	115.1°	110.5°
C08	C09	C10	120.0°	118.6°
C06	C05	C10	119.3°	121.5°
C06	C05	N04	119.7°	119.3°
C05	C06	H5	119.8°	119.3°
N11	C09	C10	124.9°	130.9°
C09	C10	C05	120.5°	119.8°
C09	C10	H1	119.8°	120.0°
C10	C05	N04	121.0°	119.3°
C05	C10	H1	119.7°	120.1°
C05	N04	C02	125.8°	120.0°
C05	N04	H7	117.0°	120.0°
N04	C02	O03	122.2°	120.0°
N04	C02	C01	119.1°	120.0°
C02	N04	H7	117.1°	120.0°
O03	C02	C01	118.7°	120.0°
C02	C01	H2	109.5°	109.5°
C02	C01	H3	109.5°	109.4°
C02	C01	H4	109.4°	109.5°
H2	C01	H3	109.4°	109.4°
H2	C01	H4	109.5°	109.5°
H3	C01	H4	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S12	N13	C08	C07	179.7°	179.9°
S12	N13	C08	C09	0.3°	0.2°
N13	S12	N11	C09	0.1°	0.1°
C08	N13	S12	N11	0.1°	0.2°
N13	C08	C07	C09	179.4°	179.8°
N13	C08	C07	C06	179.6°	179.9°
N13	C08	C09	N11	0.4°	0.2°
N13	C08	C09	C10	179.6°	179.7°
N13	C08	C07	H6	0.4°	0.2°
S12	N11	C09	C08	0.3°	0.0°
S12	N11	C09	C10	179.7°	179.4°
C08	C07	C06	H6	180.0°	179.7°
C08	C07	C06	C05	0.2°	0.0°
C07	C08	C09	N11	179.9°	180.0°
C07	C08	C09	C10	0.1°	0.5°
C08	C07	C06	H5	179.8°	180.0°
C06	C07	C08	C09	0.2°	0.2°
C07	C06	C05	H5	180.0°	180.0°
C07	C06	C05	C10	0.6°	0.0°
C07	C06	C05	N04	179.3°	180.0°
C08	C09	N11	C10	180.0°	179.4°
C08	C09	C10	C05	0.3°	0.5°
C08	C09	C10	H1	179.7°	179.7°
C09	C08	C07	H6	179.8°	179.9°
C06	C05	C10	C09	0.7°	0.3°
C06	C05	C10	N04	178.7°	179.9°
C06	C05	N04	C02	142.0°	34.2°
C06	C05	C10	H1	179.3°	179.9°
C05	C06	C07	H6	179.8°	179.7°
C06	C05	N04	H7	38.0°	146.0°
N11	C09	C10	C05	179.7°	179.9°
N11	C09	C10	H1	0.3°	0.4°
C09	C10	C05	H1	180.0°	179.7°
C09	C10	C05	N04	179.4°	179.7°
C10	C05	N04	C02	39.3°	145.9°
C10	C05	C06	H5	179.4°	180.0°
C10	C05	N04	H7	140.7°	34.0°
C05	N04	C02	H7	180.0°	179.9°
C05	N04	C02	O03	0.4°	5.2°
C05	N04	C02	C01	179.8°	174.7°
N04	C05	C10	H1	0.6°	0.0°
N04	C05	C06	H5	0.7°	0.0°
N04	C02	O03	C01	179.8°	179.9°
N04	C02	C01	H2	179.8°	89.9°
N04	C02	C01	H3	60.2°	30.0°
N04	C02	C01	H4	59.8°	150.1°
O03	C02	C01	H2	0.0°	90.0°
O03	C02	C01	H3	120.0°	150.1°
O03	C02	C01	H4	120.0°	30.1°
O03	C02	N04	H7	179.6°	174.7°
C02	C01	H2	H3	120.0°	120.0°
C02	C01	H2	H4	120.0°	120.0°
C02	C01	H3	H4	120.0°	120.0°
C01	C02	N04	H7	0.3°	5.4°
H2	C01	H3	H4	120.0°	120.0°
H5	C06	C07	H6	0.2°	0.3°

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PDB entries from 2024-07-17

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