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Summary Geometry Related PDB entries

TEM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C2	sing	1.43Å	1.23Å
O1	HO1	sing	0.97Å	0.95Å
C2	C3	sing	1.53Å	1.53Å
C2	C9	sing	1.53Å	1.52Å
C2	H2	sing	1.09Å	1.11Å
C3	N4	sing	1.46Å	1.47Å
C3	H31	sing	1.09Å	1.12Å
C3	H32	sing	1.09Å	1.11Å
N4	C5	sing	1.36Å	1.43Å
N4	HN4	sing	0.97Å	1.02Å
C5	C6	doub	1.35Å	1.34Å
C5	H5	sing	1.08Å	1.10Å
C6	C7	sing	1.40Å	1.49Å
C6	H6	sing	1.08Å	1.10Å
C7	O8	doub	1.21Å	1.22Å
C7	H7	sing	1.08Å	1.10Å
C9	C10	sing	1.51Å	1.52Å
C9	H91	sing	1.09Å	1.12Å
C9	H92	sing	1.09Å	1.12Å
C10	O11	doub	1.21Å	1.43Å
C10	H10	sing	1.08Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	O1	HO1	119.5°	106.8°
O1	C2	C3	119.5°	109.5°
O1	C2	C9	123.1°	109.4°
O1	C2	H2	63.1°	109.5°
C3	C2	C9	117.3°	109.5°
C3	C2	H2	126.3°	109.4°
C2	C3	N4	108.4°	109.5°
C2	C3	H31	112.6°	109.5°
C2	C3	H32	112.6°	109.5°
C9	C2	H2	86.9°	109.5°
C2	C9	C10	110.4°	109.5°
C2	C9	H91	111.9°	109.4°
C2	C9	H92	111.9°	109.5°
N4	C3	H31	112.6°	109.5°
N4	C3	H32	112.6°	109.5°
C3	N4	C5	117.0°	120.1°
C3	N4	HN4	109.4°	119.9°
H31	C3	H32	97.8°	109.4°
C5	N4	HN4	109.5°	120.0°
N4	C5	C6	131.6°	120.1°
N4	C5	H5	118.2°	119.9°
C6	C5	H5	110.2°	120.0°
C5	C6	C7	117.8°	120.1°
C5	C6	H6	116.1°	120.0°
C7	C6	H6	126.1°	120.0°
C6	C7	O8	121.4°	120.0°
C6	C7	H7	129.3°	120.0°
O8	C7	H7	109.3°	120.0°
C10	C9	H91	111.9°	109.5°
C10	C9	H92	111.9°	109.4°
C9	C10	O11	113.9°	120.0°
C9	C10	H10	125.8°	120.0°
H91	C9	H92	98.5°	109.5°
O11	C10	H10	120.3°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C2	C3	C9	175.7°	120.0°
O1	C2	C3	H2	76.7°	120.0°
O1	C2	C9	H2	54.8°	120.0°
O1	C2	C3	N4	2.6°	60.0°
O1	C2	C3	H31	122.6°	60.0°
O1	C2	C3	H32	127.9°	180.0°
O1	C2	C9	C10	42.7°	60.0°
O1	C2	C9	H91	168.0°	180.0°
O1	C2	C9	H92	82.6°	60.0°
HO1	O1	C2	C3	180.0°	60.0°
HO1	O1	C2	C9	4.5°	60.0°
HO1	O1	C2	H2	61.7°	180.0°
C3	C2	C9	H2	129.7°	120.0°
C2	C3	N4	H31	125.2°	120.0°
C2	C3	N4	H32	125.3°	120.1°
C2	C3	H31	H32	118.5°	120.0°
C2	C3	N4	C5	89.3°	180.0°
C2	C3	N4	HN4	145.4°	0.1°
C3	C2	C9	C10	141.8°	180.0°
C3	C2	C9	H91	16.5°	60.0°
C3	C2	C9	H92	92.9°	60.0°
C9	C2	C3	N4	178.3°	180.0°
C9	C2	C3	H31	53.1°	60.0°
C9	C2	C3	H32	56.4°	60.0°
C2	C9	C10	H91	125.3°	120.0°
C2	C9	C10	H92	125.3°	120.0°
C2	C9	H91	H92	117.8°	120.0°
C2	C9	C10	O11	60.4°	120.0°
C2	C9	C10	H10	119.7°	59.9°
H2	C2	C3	N4	74.1°	60.0°
H2	C2	C3	H31	160.7°	180.0°
H2	C2	C3	H32	51.3°	60.0°
H2	C2	C9	C10	12.1°	60.0°
H2	C2	C9	H91	113.2°	60.0°
H2	C2	C9	H92	137.4°	180.0°
N4	C3	H31	H32	118.5°	120.0°
C3	N4	C5	HN4	125.2°	179.9°
C3	N4	C5	C6	21.6°	180.0°
C3	N4	C5	H5	158.4°	0.0°
H31	C3	N4	C5	145.5°	60.0°
H31	C3	N4	HN4	20.2°	120.1°
H32	C3	N4	C5	36.0°	59.9°
H32	C3	N4	HN4	89.3°	120.0°
N4	C5	C6	H5	180.0°	180.0°
N4	C5	C6	C7	177.4°	180.0°
N4	C5	C6	H6	2.6°	0.0°
HN4	N4	C5	C6	146.8°	0.0°
HN4	N4	C5	H5	33.2°	180.0°
C5	C6	C7	H6	180.0°	180.0°
C5	C6	C7	O8	178.0°	180.0°
C5	C6	C7	H7	2.0°	0.0°
H5	C5	C6	C7	2.6°	0.0°
H5	C5	C6	H6	177.4°	NaN°
C6	C7	O8	H7	180.0°	180.0°
H6	C6	C7	O8	2.0°	0.0°
H6	C6	C7	H7	178.0°	180.0°
C10	C9	H91	H92	117.8°	120.0°
C9	C10	O11	H10	180.0°	179.9°
H91	C9	C10	O11	174.4°	0.0°
H91	C9	C10	H10	5.6°	179.9°
H92	C9	C10	O11	64.9°	120.0°
H92	C9	C10	H10	115.0°	60.1°

221716

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