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TED

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C6sing1.36Å1.37Å
C2N1sing1.34Å1.38Å
C2N3sing1.34Å1.38Å
O2C2doub1.22Å1.23Å
N3C4sing1.35Å1.38Å
C4O4doub1.22Å1.23Å
C4C5sing1.47Å1.45Å
C5C7sing1.47Å1.51Å
C6C5doub1.38Å1.35Å
C7C8doub1.35Å1.33Å
C8C9sing1.42Å1.47Å
C9O9doub1.22Å1.22Å
C9N10sing1.35Å1.35Å
C1'N1sing1.46Å1.47Å
C1'C2'sing1.54Å1.53Å
C1'O4'sing1.44Å1.48Å
N10C11sing1.46Å1.46Å
C11C12sing1.53Å1.53Å
C12N13sing1.47Å1.47Å
N13CY5sing1.35Å1.35Å
C2'C3'sing1.55Å1.51Å
C3'C4'sing1.55Å1.51Å
O3'C3'sing1.43Å1.43Å
C4'C5'sing1.53Å1.53Å
O4'C4'sing1.44Å1.44Å
C5'O5'sing1.43Å1.43Å
O5'Psing1.61Å1.61Å
CY1NYAsing1.47Å1.47Å
OY1CY5doub1.21Å1.24Å
OY2CY6doub1.21Å1.24Å
OY3CY7doub1.21Å1.24Å
CY4NYAsing1.47Å1.47Å
OY4CY8sing1.34Å1.24Å
CY5CY1sing1.51Å1.51Å
CY6CY2sing1.51Å1.51Å
CY6OY6sing1.34Å1.21Å
CY7CY3sing1.51Å1.51Å
CY7OY7sing1.34Å1.21Å
CY8CY4sing1.51Å1.51Å
OY8CY8doub1.21Å1.21Å
CYACYBsing1.53Å1.53Å
NYACYAsing1.47Å1.47Å
NYBCY2sing1.47Å1.47Å
NYBCY3sing1.47Å1.47Å
NYBCYBsing1.47Å1.47Å
POP3sing1.61Å1.48Å
POP1doub1.48Å1.72Å
POP2sing1.61Å1.72Å
N3HN3sing0.97Å1.00Å
C6H6sing1.08Å1.08Å
C7H7sing1.08Å1.08Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
N10HN10sing0.97Å1.00Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C12H12Asing1.09Å1.10Å
N13HN13sing0.97Å1.00Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
CY1HY1sing1.09Å1.10Å
CY1HY1Asing1.09Å1.10Å
CY2HY2sing1.09Å1.10Å
CY2HY2Asing1.09Å1.10Å
CY3HY3sing1.09Å1.10Å
CY3HY3Asing1.09Å1.10Å
CY4HY4sing1.09Å1.10Å
CY4HY4Asing1.09Å1.10Å
OY4HOY4sing0.97Å0.95Å
OY6HOY6sing0.97Å0.95Å
OY7HOY7sing0.97Å0.95Å
CYAHYAsing1.09Å1.10Å
CYAHYAAsing1.09Å1.10Å
CYBHYBsing1.09Å1.10Å
CYBHYBAsing1.09Å1.10Å
OP3HOP3sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6N1C2121.7°121.5°
N1C6C5121.4°119.3°
C6N1C1'121.0°119.3°
N1C6H6119.3°120.3°
N1C2N3116.0°122.1°
N1C2O2122.2°118.9°
C2N1C1'117.4°119.2°
N3C2O2121.9°119.0°
C2N3C4126.1°120.5°
C2N3HN3116.9°119.8°
N3C4O4120.6°120.7°
N3C4C5114.2°118.5°
C4N3HN3117.0°119.7°
O4C4C5125.3°120.8°
C4C5C7119.6°121.0°
C4C5C6120.7°118.0°
C7C5C6119.7°121.0°
C5C7C8120.0°120.0°
C5C7H7120.0°120.0°
C5C6H6119.3°120.4°
C7C8C9120.0°120.0°
C8C7H7120.0°120.0°
C7C8H8120.0°120.1°
C8C9O9120.1°120.0°
C8C9N10120.0°120.0°
C9C8H8120.0°120.0°
O9C9N10120.0°119.9°
C9N10C11120.0°120.0°
C9N10HN10120.0°119.9°
N1C1'C2'113.4°109.9°
N1C1'O4'110.1°109.9°
N1C1'H1'106.1°109.9°
C2'C1'O4'108.9°107.2°
C1'C2'C3'102.0°104.2°
C2'C1'H1'107.4°109.9°
C1'C2'H2'112.0°110.5°
C1'C2'H2'A112.0°110.4°
C1'O4'C4'110.4°107.0°
O4'C1'H1'110.8°109.9°
N10C11C12109.5°109.5°
C11N10HN10120.0°120.0°
N10C11H11109.5°109.5°
N10C11H11A109.5°109.5°
C11C12N13109.5°109.5°
C12C11H11109.5°109.5°
C12C11H11A109.4°109.4°
C11C12H12109.4°109.4°
C11C12H12A109.5°109.5°
C12N13CY5120.0°120.0°
N13C12H12109.5°109.5°
N13C12H12A109.5°109.5°
C12N13HN13120.0°120.0°
N13CY5OY1120.0°120.0°
N13CY5CY1119.8°120.0°
CY5N13HN13120.0°120.1°
C2'C3'C4'110.9°102.1°
C2'C3'O3'109.8°110.9°
C3'C2'H2'112.0°110.5°
C3'C2'H2'A112.1°110.5°
C2'C3'H3'107.7°110.9°
C4'C3'O3'108.0°110.9°
C3'C4'C5'114.2°110.6°
C3'C4'O4'105.8°103.5°
C4'C3'H3'109.6°110.9°
C3'C4'H4'108.9°110.6°
O3'C3'H3'110.7°110.8°
C3'O3'HO3'109.5°114.0°
C5'C4'O4'109.6°110.7°
C4'C5'O5'111.6°109.5°
C5'C4'H4'105.0°110.5°
C4'C5'H5'108.8°109.5°
C4'C5'H5'A108.8°109.5°
O4'C4'H4'113.6°110.8°
C5'O5'P120.6°123.0°
O5'C5'H5'108.8°109.5°
O5'C5'H5'A108.8°109.5°
O5'POP3109.5°109.5°
O5'POP1109.5°109.5°
O5'POP2109.5°109.5°
CY1NYACY4106.7°111.0°
NYACY1CY5109.6°109.5°
CY1NYACYA106.7°111.0°
NYACY1HY1109.4°109.5°
NYACY1HY1A109.4°109.5°
OY1CY5CY1120.2°120.0°
OY2CY6CY2120.0°120.0°
OY2CY6OY6120.0°120.0°
OY3CY7CY3120.0°120.0°
OY3CY7OY7119.9°120.0°
NYACY4CY8109.4°109.4°
CY4NYACYA106.7°111.0°
NYACY4HY4109.5°109.5°
NYACY4HY4A109.5°109.5°
OY4CY8CY4120.0°120.0°
OY4CY8OY8120.0°120.0°
CY8OY4HOY4109.5°117.0°
CY5CY1HY1109.4°109.5°
CY5CY1HY1A109.4°109.4°
CY2CY6OY6120.0°120.0°
CY6CY2NYB109.4°109.4°
CY6CY2HY2109.5°109.5°
CY6CY2HY2A109.5°109.5°
CY6OY6HOY6109.5°117.0°
CY3CY7OY7120.0°120.0°
CY7CY3NYB109.5°109.5°
CY7CY3HY3109.5°109.4°
CY7CY3HY3A109.5°109.5°
CY7OY7HOY7109.5°117.1°
CY4CY8OY8120.0°120.0°
CY8CY4HY4109.5°109.5°
CY8CY4HY4A109.5°109.5°
CYBCYANYA109.5°109.5°
CYACYBNYB109.4°109.5°
CYBCYAHYA109.4°109.5°
CYBCYAHYAA109.5°109.4°
CYACYBHYB109.5°109.5°
CYACYBHYBA109.5°109.4°
NYACYAHYA109.5°109.5°
NYACYAHYAA109.5°109.5°
CY2NYBCY3106.7°111.0°
CY2NYBCYB106.7°111.0°
NYBCY2HY2109.5°109.5°
NYBCY2HY2A109.5°109.5°
CY3NYBCYB106.6°111.0°
NYBCY3HY3109.5°109.5°
NYBCY3HY3A109.5°109.5°
NYBCYBHYB109.5°109.5°
NYBCYBHYBA109.5°109.5°
OP3POP1109.5°109.5°
OP3POP2109.5°109.5°
POP3HOP3109.5°114.0°
OP1POP2109.5°109.4°
POP2HOP2109.5°114.0°
H11C11H11A109.5°109.5°
H12C12H12A109.5°109.5°
H2'C2'H2'A106.8°110.5°
H5'C5'H5'A110.2°109.4°
HY1CY1HY1A109.5°109.4°
HY2CY2HY2A109.4°109.5°
HY3CY3HY3A109.5°109.5°
HY4CY4HY4A109.5°109.5°
HYACYAHYAA109.5°109.4°
HYBCYBHYBA109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6N1C2C1'179.9°179.6°
C6N1C2N30.1°0.1°
C6N1C2O2180.0°180.0°
N1C6C5C40.1°0.0°
N1C6C5C7180.0°180.0°
N1C6C5H6180.0°180.0°
C6N1C1'C2'46.8°115.0°
C6N1C1'O4'75.6°127.2°
C6N1C1'H1'164.4°6.1°
N1C2N3O2180.0°179.9°
N1C2N3C40.1°0.1°
C2N1C6C50.1°0.0°
C2N1C1'C2'133.1°64.6°
C2N1C1'O4'104.5°53.2°
N1C2N3HN3179.9°179.9°
C2N1C6H6179.9°180.0°
C2N1C1'H1'15.5°174.3°
C2N3C4HN3180.0°179.9°
C2N3C4O4180.0°179.9°
C2N3C4C50.1°0.1°
N3C2N1C1'179.9°179.7°
O2C2N3C4180.0°180.0°
O2C2N1C1'0.1°0.4°
O2C2N3HN30.1°0.0°
N3C4O4C5179.9°180.0°
N3C4C5C7180.0°180.0°
N3C4C5C60.1°0.0°
O4C4C5C70.2°0.0°
O4C4C5C6180.0°180.0°
O4C4N3HN30.0°0.0°
C4C5C7C6179.9°180.0°
C4C5C7C8137.3°3.9°
C5C4N3HN3179.9°180.0°
C4C5C6H6179.9°180.0°
C4C5C7H742.7°176.1°
C5C7C8H7180.0°180.0°
C5C7C8C9179.0°174.6°
C7C5C6H60.0°0.0°
C5C7C8H81.1°5.4°
C6C5C7C842.6°176.1°
C5C6N1C1'180.0°179.7°
C6C5C7H7137.4°3.9°
C7C8C9H8180.0°180.0°
C7C8C9O9112.8°0.0°
C7C8C9N1067.2°180.0°
C8C9O9N10179.9°180.0°
C8C9N10C11179.5°180.0°
C9C8C7H71.0°5.4°
C8C9N10HN100.5°0.0°
O9C9N10C110.5°0.0°
O9C9C8H867.2°180.0°
O9C9N10HN10179.5°180.0°
C9N10C11HN10180.0°180.0°
C9N10C11C1248.9°180.0°
N10C9C8H8112.8°0.0°
C9N10C11H11168.9°60.0°
C9N10C11H11A71.1°60.0°
N1C1'C2'O4'123.1°119.4°
N1C1'C2'H1'116.9°121.1°
N1C1'O4'H1'117.1°121.1°
N1C1'C2'C3'136.6°121.4°
N1C1'O4'C4'134.3°145.9°
C1'N1C6H60.0°0.3°
N1C1'C2'H2'103.4°119.8°
N1C1'C2'H2'A16.6°2.7°
C2'C1'O4'H1'117.9°119.4°
C1'C2'C3'H2'120.0°118.7°
C1'C2'C3'H2'A120.0°118.6°
C1'C2'C3'C4'13.5°20.9°
C1'C2'C3'O3'105.8°139.1°
C2'C1'O4'C4'9.3°26.5°
C1'C2'H2'H2'A123.0°122.5°
C1'C2'C3'H3'133.5°97.3°
O4'C1'C2'C3'13.6°2.0°
C1'O4'C4'C3'0.5°40.0°
C1'O4'C4'C5'124.1°158.5°
O4'C1'C2'H2'133.6°120.7°
O4'C1'C2'H2'A106.4°116.7°
C1'O4'C4'H4'118.8°78.5°
N10C11C12H11120.0°120.0°
N10C11C12H11A120.0°120.0°
N10C11C12N13142.9°180.0°
N10C11H11H11A120.0°120.1°
N10C11C12H1297.1°60.0°
N10C11C12H12A22.9°60.0°
C11C12N13H12120.0°119.9°
C11C12N13H12A120.0°120.0°
C11C12N13CY566.0°180.0°
C12C11N10HN10131.1°0.0°
C12C11H11H11A120.0°119.9°
C11C12H12H12A120.0°120.0°
C11C12N13HN13113.9°0.0°
C12N13CY5HN13180.0°180.0°
C12N13CY5OY11.4°0.0°
C12N13CY5CY1180.0°180.0°
N13C12C11H1122.9°60.0°
N13C12C11H11A97.1°60.0°
N13C12H12H12A120.0°120.0°
N13CY5CY1NYA162.4°174.0°
N13CY5OY1CY1178.6°179.9°
CY5N13C12H1254.0°60.1°
CY5N13C12H12A174.0°60.0°
N13CY5CY1HY177.6°66.0°
N13CY5CY1HY1A42.4°54.0°
C2'C3'C4'O3'120.4°118.2°
C2'C3'C4'H3'118.9°118.2°
C2'C3'O3'H3'118.9°123.6°
C2'C3'C4'C5'112.0°155.6°
C2'C3'C4'O4'8.6°37.0°
C3'C2'C1'H1'106.5°117.5°
C3'C2'H2'H2'A123.0°122.6°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'H4'131.0°81.7°
C4'C3'O3'H3'120.0°123.7°
C3'C4'C5'O4'118.5°114.1°
C3'C4'C5'H4'119.2°122.8°
C3'C4'O4'H4'119.3°118.6°
C3'C4'C5'O5'52.6°175.0°
C4'C3'C2'H2'133.5°97.8°
C4'C3'C2'H2'A106.5°139.5°
C4'C3'O3'HO3'58.9°174.1°
C3'C4'C5'H5'172.6°55.0°
C3'C4'C5'H5'A67.4°65.0°
O3'C3'C4'C5'127.6°86.3°
O3'C3'C4'O4'111.8°155.2°
O3'C3'C2'H2'14.2°20.4°
O3'C3'C2'H2'A134.2°102.3°
O3'C3'C4'H4'10.6°36.5°
C5'C4'O4'H4'117.1°122.9°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C4'C5'O5'P179.1°180.0°
C5'C4'C3'H3'6.9°37.3°
C4'C5'H5'H5'A119.1°120.0°
O4'C4'C5'O5'65.9°70.9°
C4'O4'C1'H1'108.7°93.0°
O4'C4'C3'H3'127.5°81.2°
O4'C4'C5'H5'54.1°169.1°
O4'C4'C5'H5'A174.1°49.1°
C5'O5'POP3168.6°65.0°
C5'O5'POP171.4°55.1°
C5'O5'POP248.6°175.0°
O5'C5'C4'H4'171.8°52.2°
O5'C5'H5'H5'A119.1°120.0°
O5'POP3OP1120.0°120.0°
O5'POP3OP2120.0°120.0°
O5'POP1OP2120.0°120.0°
PO5'C5'H5'59.2°59.9°
PO5'C5'H5'A60.8°60.0°
O5'POP3HOP3120.0°60.0°
O5'POP2HOP2120.0°180.0°
NYACY1CY5OY118.9°6.1°
CY1NYACY4CYA113.8°123.9°
NYACY1CY5HY1120.0°120.0°
NYACY1CY5HY1A120.0°120.0°
CY1NYACY4CY864.8°76.6°
CY1NYACYACYB174.4°170.0°
NYACY1HY1HY1A120.0°120.0°
CY1NYACY4HY455.2°163.5°
CY1NYACY4HY4A175.2°43.5°
CY1NYACYAHYA54.4°70.0°
CY1NYACYAHYAA65.6°50.0°
OY1CY5N13HN13178.6°180.0°
OY1CY5CY1HY1101.1°114.0°
OY1CY5CY1HY1A138.9°126.1°
OY2CY6CY2OY6180.0°180.0°
OY2CY6CY2NYB31.9°5.6°
OY2CY6CY2HY2151.9°125.6°
OY2CY6CY2HY2A88.2°114.3°
OY2CY6OY6HOY60.0°0.0°
OY3CY7CY3OY7180.0°179.9°
OY3CY7CY3NYB26.5°5.8°
OY3CY7CY3HY3146.5°125.8°
OY3CY7CY3HY3A93.5°114.2°
OY3CY7OY7HOY70.0°0.0°
NYACY4CY8OY459.1°179.3°
CY4NYACY1CY588.0°163.3°
NYACY4CY8HY4120.0°120.0°
NYACY4CY8HY4A120.0°120.0°
NYACY4CY8OY8120.9°0.7°
CY4NYACYACYB71.9°66.1°
CY4NYACY1HY1152.0°43.3°
CY4NYACY1HY1A32.0°76.8°
NYACY4HY4HY4A120.0°120.0°
CY4NYACYAHYA168.2°54.0°
CY4NYACYAHYAA48.1°173.9°
OY4CY8CY4OY8179.9°180.0°
OY4CY8CY4HY4179.1°59.3°
OY4CY8CY4HY4A60.9°60.7°
CY5CY1NYACYA158.3°72.8°
CY1CY5N13HN130.1°0.0°
CY5CY1HY1HY1A119.9°119.9°
CY6CY2NYBHY2120.0°120.0°
CY6CY2NYBHY2A120.0°120.0°
CY6CY2NYBCY3157.6°76.1°
CY6CY2NYBCYB88.7°160.0°
CY6CY2HY2HY2A120.0°120.0°
CY2CY6OY6HOY6180.0°180.0°
OY6CY6CY2NYB148.2°174.4°
OY6CY6CY2HY228.2°54.4°
OY6CY6CY2HY2A91.8°65.6°
CY7CY3NYBCY279.0°163.7°
CY7CY3NYBHY3120.0°120.0°
CY7CY3NYBHY3A120.0°120.0°
CY7CY3NYBCYB167.3°72.4°
CY7CY3HY3HY3A120.0°120.0°
CY3CY7OY7HOY7180.0°180.0°
OY7CY7CY3NYB153.6°174.1°
OY7CY7CY3HY333.6°54.1°
OY7CY7CY3HY3A86.4°65.9°
CY8CY4NYACYA178.6°159.5°
CY8CY4HY4HY4A120.0°120.0°
CY4CY8OY4HOY4179.9°180.0°
OY8CY8CY4HY41.0°120.7°
OY8CY8CY4HY4A119.0°119.3°
OY8CY8OY4HOY40.0°0.0°
CYBCYANYAHYA120.0°120.0°
CYBCYANYAHYAA120.0°120.0°
CYACYBNYBCY2101.1°66.1°
CYACYBNYBCY3145.1°170.0°
CYACYBNYBHYB120.0°120.0°
CYACYBNYBHYBA120.0°120.0°
CYBCYAHYAHYAA120.0°119.9°
CYACYBHYBHYBA120.0°119.9°
NYACYACYBNYB31.4°NaN°
CYANYACY1HY138.3°167.2°
CYANYACY1HY1A81.7°47.1°
CYANYACY4HY458.6°39.6°
CYANYACY4HY4A61.4°80.5°
NYACYAHYAHYAA120.0°120.0°
NYACYACYBHYB88.6°60.0°
NYACYACYBHYBA151.4°60.0°
CY2NYBCY3CYB113.7°123.9°
NYBCY2HY2HY2A120.0°120.0°
CY2NYBCY3HY341.0°76.4°
CY2NYBCY3HY3A161.0°43.7°
CY2NYBCYBHYB138.9°54.0°
CY2NYBCYBHYBA18.9°173.9°
CY3NYBCY2HY282.4°43.9°
CY3NYBCY2HY2A37.6°164.0°
NYBCY3HY3HY3A120.0°120.0°
CY3NYBCYBHYB25.1°70.0°
CY3NYBCYBHYBA94.9°50.0°
CYBNYBCY2HY231.3°80.0°
CYBNYBCY2HY2A151.3°40.0°
CYBNYBCY3HY372.7°47.5°
CYBNYBCY3HY3A47.3°167.6°
NYBCYBCYAHYA88.6°60.0°
NYBCYBCYAHYAA151.4°60.0°
NYBCYBHYBHYBA120.0°120.0°
OP3POP1OP2120.0°120.0°
OP3POP2HOP2120.0°60.0°
OP1POP3HOP30.0°180.0°
OP1POP2HOP20.0°60.0°
OP2POP3HOP3120.0°60.1°
H7C7C8H8178.9°174.6°
H1'C1'C2'H2'13.5°1.3°
H1'C1'C2'H2'A133.5°123.8°
HN10N10C11H1111.1°120.0°
HN10N10C11H11A108.9°120.0°
H11C11C12H12142.9°180.0°
H11C11C12H12A97.1°60.0°
H11AC11C12H1222.9°60.0°
H11AC11C12H12A142.9°180.0°
H12C12N13HN13126.1°120.0°
H12AC12N13HN136.1°120.0°
H2'C2'C3'H3'106.5°144.0°
H2'AC2'C3'H3'13.5°21.3°
H3'C3'O3'HO3'61.1°62.2°
H3'C3'C4'H4'110.1°160.1°
H4'C4'C5'H5'68.2°67.8°
H4'C4'C5'H5'A51.8°172.2°
HYACYACYBHYB151.4°180.0°
HYACYACYBHYBA31.4°60.1°
HYAACYACYBHYB31.4°60.1°
HYAACYACYBHYBA88.6°180.0°

222624

PDB entries from 2024-07-17

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