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TDX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4C4doub1.22Å1.25Å
C4N3sing1.35Å1.35Å
C4C5sing1.41Å1.45Å
N3C2sing1.35Å1.32Å
N3H3sing0.97Å1.02Å
C2O2doub1.22Å1.27Å
C2N1sing1.34Å1.35Å
C5C5Msing1.51Å1.52Å
C5C6doub1.35Å1.36Å
C5MH5M1sing1.09Å1.11Å
C5MH5M2sing1.09Å1.11Å
C5MH5M3sing1.09Å1.12Å
C6N1sing1.37Å1.35Å
C6H6sing1.08Å1.10Å
N1C1Bsing1.46Å1.45Å
C1BC2Bsing1.54Å1.53Å
C1BO4Bsing1.44Å1.44Å
C1BH1Bsing1.09Å1.11Å
C2BC3Bsing1.55Å1.54Å
C2BH2'1sing1.09Å1.11Å
C2BH2'2sing1.09Å1.11Å
C3BO3Bsing1.43Å1.47Å
C3BC4Bsing1.55Å1.55Å
C3BH3Bsing1.09Å1.12Å
O3BHO3'sing0.97Å0.95Å
O4BC4Bsing1.45Å1.43Å
C4BC5Bsing1.53Å1.52Å
C4BH4Bsing1.09Å1.11Å
C5BO5Bsing1.43Å1.42Å
C5BH5'1sing1.09Å1.11Å
C5BH5'2sing1.09Å1.11Å
O5BPAsing1.61Å1.61Å
PAO1Adoub1.48Å1.51Å
PAO2Asing1.61Å1.50Å
PAO3Asing1.61Å1.61Å
O2AH2Asing0.97Å0.95Å
O3APBsing1.61Å1.63Å
PBO1Bdoub1.48Å1.50Å
PBO2Bsing1.61Å1.47Å
PBO1'sing1.61Å1.61Å
O2BH2Bsing0.97Å0.95Å
O1'C1'sing1.43Å1.43Å
C1'O5'sing1.43Å1.42Å
C1'C2'sing1.53Å1.52Å
C1'H1'sing1.09Å1.12Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.52Å
C5'H5Bsing1.09Å1.12Å
C5'H5Dsing1.09Å1.12Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.53Å1.54Å
C2'H2'sing1.09Å1.12Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.43Å1.45Å
C3'C4'sing1.53Å1.52Å
C3'H3'sing1.09Å1.12Å
O3'HO3Asing0.97Å0.95Å
C4'O4'sing1.43Å1.43Å
C4'H4'sing1.09Å1.11Å
O4'HO4'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4C4N3121.9°120.3°
O4C4C5119.2°120.3°
N3C4C5118.9°119.4°
C4N3C2121.1°120.2°
C4N3H3120.5°119.9°
C4C5C5M120.5°120.5°
C4C5C6117.9°119.1°
C2N3H3118.4°119.9°
N3C2O2117.3°119.5°
N3C2N1120.5°121.0°
O2C2N1122.2°119.5°
C2N1C6122.2°120.6°
C2N1C1B119.1°119.7°
C5MC5C6121.6°120.4°
C5C5MH5M1108.3°109.5°
C5C5MH5M2120.5°109.5°
C5C5MH5M3108.2°109.5°
C5C6N1119.4°119.7°
C5C6H6120.7°120.2°
H5M1C5MH5M2108.2°109.5°
H5M1C5MH5M3101.7°109.4°
H5M2C5MH5M3108.2°109.5°
N1C6H6120.0°120.1°
C6N1C1B118.5°119.7°
N1C1BC2B117.1°109.8°
N1C1BO4B106.4°109.9°
N1C1BH1B105.9°109.8°
C2BC1BO4B107.6°107.4°
C2BC1BH1B104.6°109.9°
C1BC2BC3B101.7°104.2°
C1BC2BH2'1115.2°110.5°
C1BC2BH2'2115.2°110.5°
O4BC1BH1B115.6°109.9°
C1BO4BC4B110.6°106.9°
C3BC2BH2'1115.2°110.5°
C3BC2BH2'2115.2°110.5°
C2BC3BO3B113.3°110.9°
C2BC3BC4B104.4°102.1°
C2BC3BH3B109.8°110.9°
H2'1C2BH2'295.3°110.5°
O3BC3BC4B107.8°110.9°
O3BC3BH3B106.6°110.8°
C3BO3BHO3'113.3°106.8°
C4BC3BH3B115.2°110.9°
C3BC4BO4B106.4°103.6°
C3BC4BC5B110.7°110.6°
C3BC4BH4B111.3°110.7°
O4BC4BC5B111.0°110.8°
O4BC4BH4B111.0°110.5°
C5BC4BH4B106.7°110.6°
C4BC5BO5B108.3°109.5°
C4BC5BH5'1112.6°109.4°
C4BC5BH5'2112.6°109.4°
O5BC5BH5'1112.6°109.5°
O5BC5BH5'2112.6°109.5°
C5BO5BPA120.8°106.8°
H5'1C5BH5'297.8°109.5°
O5BPAO1A109.4°109.5°
O5BPAO2A106.5°109.5°
O5BPAO3A106.6°109.5°
O1APAO2A117.1°109.5°
O1APAO3A102.5°109.4°
O2APAO3A114.3°109.5°
PAO2AH2A106.5°106.8°
PAO3APB129.5°106.9°
O3APBO1B115.1°109.4°
O3APBO2B106.8°109.5°
O3APBO1'99.0°109.5°
O1BPBO2B115.3°109.5°
O1BPBO1'109.5°109.5°
O2BPBO1'109.9°109.5°
PBO2BH2B106.8°106.8°
PBO1'C1'118.7°106.8°
O1'C1'O5'108.1°109.5°
O1'C1'C2'110.1°109.5°
O1'C1'H1'109.8°109.4°
O5'C1'C2'109.0°109.7°
O5'C1'H1'111.0°109.4°
C1'O5'C5'113.4°107.6°
C2'C1'H1'108.9°109.4°
C1'C2'O2'110.5°109.5°
C1'C2'C3'110.5°109.1°
C1'C2'H2'107.7°109.6°
O5'C5'C4'109.2°109.8°
O5'C5'H5B112.3°109.4°
O5'C5'H5D112.3°109.5°
C4'C5'H5B112.3°109.4°
C4'C5'H5D112.3°109.4°
C5'C4'C3'108.8°109.0°
C5'C4'O4'109.3°109.6°
C5'C4'H4'110.8°109.6°
H5BC5'H5D98.1°109.4°
O2'C2'C3'108.2°109.5°
O2'C2'H2'110.0°109.5°
C2'O2'HO2'110.5°106.8°
C3'C2'H2'109.9°109.6°
C2'C3'O3'111.9°109.7°
C2'C3'C4'109.6°108.6°
C2'C3'H3'107.6°109.7°
O3'C3'C4'109.3°109.6°
O3'C3'H3'107.9°109.6°
C3'O3'HO3A111.9°106.8°
C4'C3'H3'110.3°109.6°
C3'C4'O4'111.4°109.7°
C3'C4'H4'108.6°109.5°
O4'C4'H4'108.1°109.5°
C4'O4'HO4'109.3°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4C4N3C5178.2°179.6°
O4C4N3C2179.7°180.0°
O4C4N3H30.3°0.1°
O4C4C5C5M0.8°0.2°
O4C4C5C6177.8°180.0°
C4N3C2H3180.0°179.8°
C4N3C2O2179.9°179.8°
C4N3C2N10.8°0.2°
N3C4C5C5M179.0°179.8°
N3C4C5C60.5°0.4°
C5C4N3C21.5°0.4°
C5C4N3H3178.5°179.8°
C4C5C5MC6178.5°179.8°
C4C5C5MH5M154.7°0.3°
C4C5C5MH5M2180.0°119.8°
C4C5C5MH5M354.8°120.2°
C4C5C6N13.2°0.2°
C4C5C6H6176.8°179.8°
N3C2O2N1179.0°180.0°
N3C2N1C62.1°0.0°
N3C2N1C1B177.5°180.0°
H3N3C2O20.1°0.0°
H3N3C2N1179.2°180.0°
O2C2N1C6176.9°180.0°
O2C2N1C1B1.5°0.0°
C2N1C6C54.1°0.0°
C2N1C6C1B175.5°180.0°
C2N1C6H6175.9°180.0°
C2N1C1BC2B135.2°59.7°
C2N1C1BO4B104.5°58.3°
C2N1C1BH1B19.0°179.3°
C5C5MH5M1H5M2132.2°120.0°
C5C5MH5M1H5M3113.9°120.0°
C5C5MH5M2H5M3125.3°120.1°
C5MC5C6N1178.3°180.0°
C5MC5C6H61.7°0.0°
C6C5C5MH5M1123.8°180.0°
C6C5C5MH5M21.5°60.0°
C6C5C5MH5M3126.7°60.0°
C5C6N1H6180.0°180.0°
C5C6N1C1B179.6°180.0°
H5M1C5MH5M2H5M3109.5°119.9°
C6N1C1BC2B49.2°120.3°
C6N1C1BO4B71.1°121.7°
C6N1C1BH1B165.3°0.7°
H6C6N1C1B0.4°0.1°
N1C1BC2BO4B119.7°119.6°
N1C1BC2BH1B116.8°120.9°
N1C1BO4BH1B117.3°121.0°
N1C1BC2BC3B146.8°121.5°
N1C1BC2BH2'121.6°119.9°
N1C1BC2BH2'287.9°2.8°
N1C1BO4BC4B140.1°145.8°
C2BC1BO4BH1B116.5°119.5°
C1BC2BC3BH2'1125.3°118.7°
C1BC2BC3BH2'2125.3°118.7°
C1BC2BH2'1H2'2121.1°122.6°
C1BC2BC3BO3B87.2°139.1°
C1BC2BC3BC4B29.7°20.9°
C1BC2BC3BH3B153.7°97.3°
C2BC1BO4BC4B13.9°26.3°
O4BC1BC2BC3B27.2°1.9°
O4BC1BC2BH2'198.1°120.6°
O4BC1BC2BH2'2152.4°116.8°
C1BO4BC4BC3B5.8°39.9°
C1BO4BC4BC5B114.6°158.5°
C1BO4BC4BH4B127.0°78.7°
H1BC1BC2BC3B96.3°117.6°
H1BC1BC2BH2'1138.4°1.1°
H1BC1BC2BH2'228.9°123.7°
H1BC1BO4BC4B102.6°93.2°
C3BC2BH2'1H2'2121.0°122.6°
C2BC3BO3BC4B114.9°112.7°
C2BC3BO3BH3B120.9°123.6°
C2BC3BC4BH3B120.5°118.2°
C2BC3BO3BHO3'180.0°61.4°
C2BC3BC4BO4B22.9°37.0°
C2BC3BC4BC5B97.7°155.7°
C2BC3BC4BH4B143.8°81.4°
H2'1C2BC3BO3B147.5°20.4°
H2'1C2BC3BC4B95.6°97.8°
H2'1C2BC3BH3B28.4°144.0°
H2'2C2BC3BO3B38.1°102.2°
H2'2C2BC3BC4B155.0°139.6°
H2'2C2BC3BH3B81.0°21.4°
O3BC3BC4BH3B118.8°123.6°
O3BC3BC4BO4B97.8°155.2°
O3BC3BC4BC5B141.6°86.1°
O3BC3BC4BH4B23.2°36.8°
C4BC3BO3BHO3'65.1°174.1°
C3BC4BO4BC5B120.4°118.6°
C3BC4BO4BH4B121.2°118.5°
C3BC4BC5BH4B121.2°122.9°
C3BC4BC5BO5B49.3°180.0°
C3BC4BC5BH5'176.0°60.0°
C3BC4BC5BH5'2174.5°60.0°
H3BC3BO3BHO3'59.1°62.2°
H3BC3BC4BO4B143.4°81.3°
H3BC3BC4BC5B22.8°37.5°
H3BC3BC4BH4B95.7°160.3°
O4BC4BC5BH4B121.0°122.8°
O4BC4BC5BO5B68.6°65.7°
O4BC4BC5BH5'1166.2°174.3°
O4BC4BC5BH5'256.7°54.3°
C4BC5BO5BH5'1125.3°120.0°
C4BC5BO5BH5'2125.3°119.9°
C4BC5BH5'1H5'2118.6°119.9°
C4BC5BO5BPA171.9°180.0°
H4BC4BC5BO5B170.5°57.1°
H4BC4BC5BH5'145.2°62.9°
H4BC4BC5BH5'264.3°177.1°
O5BC5BH5'1H5'2118.5°120.1°
C5BO5BPAO1A67.0°60.1°
C5BO5BPAO2A165.6°60.0°
C5BO5BPAO3A43.2°180.0°
H5'1C5BO5BPA46.6°60.0°
H5'2C5BO5BPA62.9°60.1°
O5BPAO1AO2A121.2°120.0°
O5BPAO1AO3A112.9°120.0°
O5BPAO2AO3A117.4°120.1°
O5BPAO2AH2A180.0°60.0°
O5BPAO3APB65.8°180.0°
O1APAO2AO3A119.9°119.9°
O1APAO2AH2A57.3°179.9°
O1APAO3APB179.3°60.0°
O2APAO3APB51.5°59.9°
O3APAO2AH2A62.5°60.0°
PAO3APBO1B20.3°60.0°
PAO3APBO2B109.1°59.9°
PAO3APBO1'136.8°180.0°
O3APBO1BO2B125.1°120.0°
O3APBO1BO1'110.4°120.0°
O3APBO2BO1'106.4°120.0°
O3APBO2BH2B180.0°60.0°
O3APBO1'C1'37.9°180.0°
O1BPBO2BO1'124.3°120.0°
O1BPBO2BH2B50.7°180.0°
O1BPBO1'C1'158.7°60.0°
O2BPBO1'C1'73.7°60.0°
O1'PBO2BH2B73.6°60.0°
PBO1'C1'O5'104.1°89.9°
PBO1'C1'C2'137.0°149.9°
PBO1'C1'H1'17.0°30.0°
O1'C1'O5'C2'119.6°120.1°
O1'C1'O5'H1'120.4°119.9°
O1'C1'C2'H1'120.5°119.9°
O1'C1'O5'C5'58.0°52.5°
O1'C1'C2'O2'57.5°61.1°
O1'C1'C2'C3'62.2°58.7°
O1'C1'C2'H2'177.7°178.7°
O5'C1'C2'H1'121.2°120.0°
C1'O5'C5'C4'63.7°67.7°
C1'O5'C5'H5B61.5°172.3°
C1'O5'C5'H5D171.0°52.5°
O5'C1'C2'O2'175.9°178.8°
O5'C1'C2'C3'56.2°61.4°
O5'C1'C2'H2'63.9°58.6°
C2'C1'O5'C5'61.7°67.6°
C1'C2'O2'C3'121.1°119.6°
C1'C2'O2'H2'118.8°120.2°
C1'C2'C3'H2'118.8°120.0°
C1'C2'O2'HO2'180.0°60.4°
C1'C2'C3'O3'176.3°173.6°
C1'C2'C3'C4'54.7°53.8°
C1'C2'C3'H3'65.3°65.9°
H1'C1'O5'C5'178.4°172.4°
H1'C1'C2'O2'62.9°58.8°
H1'C1'C2'C3'177.4°178.6°
H1'C1'C2'H2'57.3°61.4°
O5'C5'C4'H5B125.3°120.0°
O5'C5'C4'H5D125.3°120.2°
O5'C5'H5BH5D118.2°119.9°
O5'C5'C4'C3'58.7°61.3°
O5'C5'C4'O4'179.5°178.7°
O5'C5'C4'H4'60.6°58.6°
C4'C5'H5BH5D118.2°119.9°
C5'C4'C3'C2'55.6°53.8°
C5'C4'C3'O3'178.7°173.6°
C5'C4'C3'O4'120.5°119.9°
C5'C4'C3'H4'120.6°119.9°
C5'C4'C3'H3'62.8°66.0°
C5'C4'O4'H4'120.6°120.2°
C5'C4'O4'HO4'180.0°60.0°
H5BC5'C4'C3'66.6°178.7°
H5BC5'C4'O4'55.2°58.7°
H5BC5'C4'H4'174.2°61.4°
H5DC5'C4'C3'176.1°58.9°
H5DC5'C4'O4'54.3°61.1°
H5DC5'C4'H4'64.7°178.7°
O2'C2'C3'H2'120.2°120.1°
O2'C2'C3'O3'62.7°66.5°
O2'C2'C3'C4'175.8°173.7°
O2'C2'C3'H3'55.8°53.9°
C3'C2'O2'HO2'58.9°180.0°
C2'C3'O3'C4'121.7°119.2°
C2'C3'O3'H3'118.3°120.5°
C2'C3'C4'H3'118.4°119.8°
C2'C3'O3'HO3A180.0°179.1°
C2'C3'C4'O4'176.1°173.7°
C2'C3'C4'H4'65.0°66.2°
H2'C2'O2'HO2'61.2°59.8°
H2'C2'C3'O3'57.5°53.6°
H2'C2'C3'C4'64.0°66.2°
H2'C2'C3'H3'175.9°174.1°
O3'C3'C4'H3'118.6°120.4°
O3'C3'C4'O4'60.8°66.4°
O3'C3'C4'H4'58.1°53.7°
C4'C3'O3'HO3A58.3°60.0°
C3'C4'O4'H4'119.2°120.2°
C3'C4'O4'HO4'59.9°179.6°
H3'C3'O3'HO3A61.7°60.4°
H3'C3'C4'O4'57.7°53.9°
H3'C3'C4'H4'176.6°174.1°
H4'C4'O4'HO4'59.3°60.3°

222415

PDB entries from 2024-07-10

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