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TDO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4PP2doub1.48Å1.51Å
P2O3Psing1.61Å1.67Å
P2O1sing1.61Å1.62Å
P2OPPsing1.61Å1.61Å
O3PH3POsing0.97Å0.95Å
O1C1sing1.43Å1.43Å
C1C2sing1.53Å1.53Å
C1O5sing1.43Å1.44Å
C1H1sing1.09Å1.10Å
C2O2sing1.43Å1.43Å
C2C3sing1.54Å1.52Å
C2H2sing1.09Å1.10Å
O2HAsing0.97Å0.95Å
C3O3sing1.43Å1.44Å
C3C4sing1.52Å1.50Å
C3H3sing1.09Å1.10Å
O3HBsing0.97Å0.95Å
C4O4doub1.21Å1.23Å
C4C5sing1.51Å1.51Å
C5O5sing1.43Å1.44Å
C5C6sing1.53Å1.53Å
C5H5sing1.09Å1.10Å
C6H6C1sing1.09Å1.10Å
C6H6C2sing1.09Å1.10Å
C6H6C3sing1.09Å1.10Å
OPPPsing1.61Å1.61Å
PO1Pdoub1.48Å1.51Å
PO2Psing1.61Å1.67Å
PO5'sing1.61Å1.60Å
O2PH2POsing0.97Å0.95Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.51Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'O4'sing1.44Å1.43Å
C4'C3'sing1.55Å1.51Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.43Å
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.10Å
O3'HCsing0.97Å0.95Å
C2'C1'sing1.54Å1.52Å
C2'H2'1sing1.09Å1.10Å
C2'H2'2sing1.09Å1.10Å
C1'N11sing1.46Å1.46Å
C1'H1'sing1.09Å1.10Å
N11C21sing1.35Å1.35ÅAromatic
N11C61sing1.37Å1.35ÅAromatic
C21O21doub1.22Å1.25Å
C21N31sing1.35Å1.33ÅAromatic
N31C41sing1.35Å1.33ÅAromatic
N31H31sing0.97Å1.00Å
C41O41doub1.22Å1.24Å
C41C51sing1.42Å1.48ÅAromatic
C51C5Asing1.51Å1.51Å
C51C61doub1.35Å1.38ÅAromatic
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C5AH5A3sing1.09Å1.10Å
C61H61sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4PP2O3P117.8°109.4°
O4PP2O1105.9°109.5°
O4PP2OPP110.7°109.5°
O3PP2O1111.9°109.5°
O3PP2OPP104.7°109.5°
P2O3PH3PO109.5°106.8°
O1P2OPP105.1°109.5°
P2O1C1122.5°106.8°
P2OPPP127.2°106.8°
O1C1C2108.1°109.3°
O1C1O5110.8°109.3°
O1C1H1109.6°109.3°
C2C1O5109.8°110.2°
C2C1H1110.6°109.4°
C1C2O2110.4°109.6°
C1C2C3110.0°108.7°
C1C2H2108.2°109.6°
O5C1H1107.9°109.4°
C1O5C5116.0°107.7°
O2C2C3108.7°109.7°
O2C2H2109.6°109.7°
C2O2HA109.5°106.8°
C3C2H2109.9°109.6°
C2C3O3112.2°109.9°
C2C3C4107.0°107.5°
C2C3H3110.6°109.9°
O3C3C4113.1°110.0°
O3C3H3104.3°109.9°
C3O3HB109.5°106.8°
C4C3H3109.7°109.7°
C3C4O4121.1°121.1°
C3C4C5114.5°117.6°
O4C4C5124.4°121.2°
C4C5O5108.6°109.0°
C4C5C6112.9°109.6°
C4C5H5107.6°109.6°
O5C5C6109.0°109.6°
O5C5H5111.6°109.6°
C6C5H5107.1°109.5°
C5C6H6C1109.4°109.4°
C5C6H6C2109.5°109.5°
C5C6H6C3109.5°109.5°
H6C1C6H6C2109.5°109.5°
H6C1C6H6C3109.5°109.5°
H6C2C6H6C3109.4°109.5°
OPPPO1P110.7°109.5°
OPPPO2P113.9°109.4°
OPPPO5'101.7°109.5°
O1PPO2P114.0°109.5°
O1PPO5'107.1°109.5°
O2PPO5'108.5°109.5°
PO2PH2PO109.5°106.8°
PO5'C5'119.4°106.8°
O5'C5'C4'110.1°109.5°
O5'C5'H5'1109.1°109.5°
O5'C5'H5'2109.3°109.4°
C4'C5'H5'1109.1°109.5°
C4'C5'H5'2109.3°109.5°
C5'C4'O4'112.4°110.6°
C5'C4'C3'111.2°110.7°
C5'C4'H4'105.2°110.5°
H5'1C5'H5'2110.0°109.4°
O4'C4'C3'106.1°103.6°
O4'C4'H4'110.4°110.6°
C4'O4'C1'111.0°107.0°
C3'C4'H4'111.6°110.6°
C4'C3'O3'106.0°111.2°
C4'C3'C2'105.3°102.1°
C4'C3'H3'115.1°110.7°
O4'C1'C2'105.9°107.3°
O4'C1'N11104.9°109.9°
O4'C1'H1'117.2°109.9°
O3'C3'C2'111.6°110.9°
O3'C3'H3'109.1°110.8°
C3'O3'HC109.5°106.8°
C2'C3'H3'109.8°110.9°
C3'C2'C1'102.2°104.2°
C3'C2'H2'1113.5°110.4°
C3'C2'H2'2112.0°110.6°
C1'C2'H2'1113.5°110.5°
C1'C2'H2'2112.0°110.5°
C2'C1'N11116.3°110.0°
C2'C1'H1'106.0°109.9°
H2'1C2'H2'2104.0°110.6°
N11C1'H1'107.0°109.8°
C1'N11C21121.3°119.7°
C1'N11C61118.1°119.7°
C21N11C61120.5°120.6°
N11C21O21122.2°119.6°
N11C21N31120.8°120.9°
N11C61C51121.6°119.7°
N11C61H61119.2°120.1°
O21C21N31117.0°119.5°
C21N31C41123.0°120.3°
C21N31H31118.5°119.8°
C41N31H31118.5°119.9°
N31C41O41120.3°120.3°
N31C41C51118.1°119.4°
O41C41C51121.5°120.3°
C41C51C5A122.4°120.5°
C41C51C61115.9°119.1°
C5AC51C61121.6°120.4°
C51C5AH5A1109.4°109.4°
C51C5AH5A2109.5°109.4°
C51C5AH5A3109.5°109.5°
C51C61H61119.2°120.2°
H5A1C5AH5A2109.5°109.5°
H5A1C5AH5A3109.5°109.5°
H5A2C5AH5A3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4PP2O3PO1123.1°120.0°
O4PP2O3POPP123.5°120.0°
O4PP2O1OPP117.3°120.0°
O4PP2O3PH3PO66.9°180.0°
O4PP2O1C1113.1°55.0°
O4PP2OPPP27.6°45.0°
O3PP2O1OPP113.1°120.0°
O3PP2O1C116.6°65.0°
O3PP2OPPP155.6°75.0°
O1P2O3PH3PO56.2°60.0°
P2O1C1C2159.6°149.4°
P2O1C1O580.0°90.0°
P2O1C1H139.0°29.7°
O1P2OPPP86.4°165.0°
OPPP2O3PH3PO169.6°60.0°
OPPP2O1C1129.6°175.0°
P2OPPPO1P66.6°45.0°
P2OPPPO2P63.4°75.0°
P2OPPPO5'179.9°165.0°
O1C1C2O5121.0°120.1°
O1C1C2H1120.0°119.6°
O1C1O5H1120.0°119.6°
O1C1C2O258.6°65.1°
O1C1C2C3178.5°175.0°
O1C1C2H261.3°55.3°
O1C1O5C5176.6°168.6°
C2C1O5H1120.6°120.3°
C1C2O2C3120.8°119.2°
C1C2O2H2119.1°120.4°
C1C2C3H2119.1°119.7°
C1C2O2HA102.9°180.0°
C1C2C3O3178.6°168.3°
C1C2C3C456.8°48.6°
C1C2C3H362.6°70.8°
C2C1O5C557.2°71.3°
O5C1C2O262.4°55.0°
O5C1C2C357.5°64.9°
O5C1C2H2177.6°175.4°
C1O5C5C453.9°61.6°
C1O5C5C6177.4°178.5°
C1O5C5H564.5°58.3°
H1C1C2O2178.6°175.2°
H1C1C2C361.5°55.4°
H1C1C2H258.7°64.4°
H1C1O5C563.4°48.9°
O2C2C3H2120.0°120.4°
O2C2C3O360.5°48.5°
O2C2C3C464.1°71.3°
O2C2C3H3176.4°169.4°
C3C2O2HA136.3°60.8°
C2C3O3C4121.2°118.2°
C2C3O3H3119.8°121.0°
C2C3C4H3120.1°119.4°
C2C3O3HB42.2°180.0°
C2C3C4O4123.2°134.6°
C2C3C4C556.8°45.2°
H2C2O2HA16.2°59.6°
H2C2C3O359.5°72.0°
H2C2C3C4175.9°168.3°
H2C2C3H356.5°49.0°
O3C3C4H3115.9°121.0°
O3C3C4O40.9°15.0°
O3C3C4C5179.2°164.8°
C4C3O3HB163.4°61.8°
C3C4O4C5180.0°179.8°
C3C4C5O554.0°51.8°
C3C4C5C6175.1°171.7°
C3C4C5H566.9°68.1°
H3C3O3HB77.5°59.0°
H3C3C4O4116.8°106.0°
H3C3C4C563.2°74.2°
O4C4C5O5125.9°128.0°
O4C4C5C64.9°8.1°
O4C4C5H5113.2°112.1°
C4C5O5C6123.4°119.9°
C4C5O5H5118.4°119.9°
C4C5C6H5118.3°120.2°
C4C5C6H6C167.2°59.8°
C4C5C6H6C2172.8°60.2°
C4C5C6H6C352.8°179.8°
O5C5C6H5120.9°120.2°
O5C5C6H6C153.7°59.8°
O5C5C6H6C266.3°179.8°
O5C5C6H6C3173.7°60.2°
C5C6H6C1H6C2120.0°120.0°
C5C6H6C1H6C3120.0°120.0°
C5C6H6C2H6C3120.0°120.0°
H5C5C6H6C1174.6°180.0°
H5C5C6H6C254.5°60.0°
H5C5C6H6C365.4°60.0°
H6C1C6H6C2H6C3120.0°120.0°
OPPPO1PO2P130.0°119.9°
OPPPO1PO5'110.1°120.0°
OPPPO2PO5'112.5°120.0°
OPPPO2PH2PO136.7°60.1°
OPPPO5'C5'67.2°175.0°
O1PPO2PO5'119.2°120.0°
O1PPO2PH2PO95.0°180.0°
O1PPO5'C5'48.9°55.0°
O2PPO5'C5'172.4°65.0°
O5'PO2PH2PO24.2°59.9°
PO5'C5'C4'179.8°180.0°
PO5'C5'H5'160.0°59.9°
PO5'C5'H5'260.3°60.0°
O5'C5'C4'H5'1119.8°120.1°
O5'C5'C4'H5'2120.0°120.0°
O5'C5'H5'1H5'2119.8°120.0°
O5'C5'C4'O4'68.1°68.6°
O5'C5'C4'C3'50.6°177.1°
O5'C5'C4'H4'171.7°54.2°
C4'C5'H5'1H5'2119.8°120.0°
C5'C4'O4'C3'121.8°118.6°
C5'C4'O4'H4'117.1°122.8°
C5'C4'C3'H4'117.2°122.9°
C5'C4'O4'C1'121.2°158.6°
C5'C4'C3'O3'138.6°86.3°
C5'C4'C3'C2'103.1°155.4°
C5'C4'C3'H3'17.9°37.3°
H5'1C5'C4'O4'51.6°51.4°
H5'1C5'C4'C3'170.4°62.8°
H5'1C5'C4'H4'68.6°174.3°
H5'2C5'C4'O4'171.9°171.4°
H5'2C5'C4'C3'69.3°57.2°
H5'2C5'C4'H4'51.7°65.7°
O4'C4'C3'H4'120.3°118.6°
O4'C4'C3'O3'98.9°155.1°
O4'C4'C3'C2'19.4°36.8°
O4'C4'C3'H3'140.4°81.3°
C4'O4'C1'C2'18.6°26.5°
C4'O4'C1'N11142.1°146.1°
C4'O4'C1'H1'99.4°92.9°
C3'C4'O4'C1'0.5°40.0°
C4'C3'O3'C2'114.1°112.8°
C4'C3'O3'H3'124.5°123.6°
C4'C3'C2'H3'124.4°118.0°
C4'C3'O3'HC20.0°174.3°
C4'C3'C2'C1'29.5°20.7°
C4'C3'C2'H2'1152.2°97.9°
C4'C3'C2'H2'290.5°139.4°
H4'C4'O4'C1'121.6°78.6°
H4'C4'C3'O3'21.4°36.5°
H4'C4'C3'C2'139.8°81.8°
H4'C4'C3'H3'99.2°160.2°
O4'C1'C2'C3'29.4°2.2°
O4'C1'C2'N11116.0°119.5°
O4'C1'C2'H1'125.2°119.4°
O4'C1'C2'H2'1152.1°120.7°
O4'C1'C2'H2'290.6°116.6°
O4'C1'N11H1'125.2°121.0°
O4'C1'N11C21119.5°53.3°
O4'C1'N11C6155.5°126.5°
O3'C3'C2'H3'121.1°123.6°
O3'C3'C2'C1'85.0°139.1°
O3'C3'C2'H2'137.7°20.5°
O3'C3'C2'H2'2155.1°102.1°
C2'C3'O3'HC134.1°61.5°
C3'C2'C1'H2'1122.6°118.5°
C3'C2'C1'H2'2120.0°118.8°
C3'C2'H2'1H2'2121.9°122.7°
C3'C2'C1'N11145.5°121.7°
C3'C2'C1'H1'95.8°117.2°
H3'C3'O3'HC104.5°62.1°
H3'C3'C2'C1'153.9°97.3°
H3'C3'C2'H2'183.4°144.1°
H3'C3'C2'H2'233.9°21.4°
C1'C2'H2'1H2'2121.9°122.6°
C2'C1'N11H1'118.2°121.1°
C2'C1'N11C21124.0°64.6°
C2'C1'N11C6161.1°115.6°
H2'1C2'C1'N1191.9°119.8°
H2'1C2'C1'H1'26.8°1.3°
H2'2C2'C1'N1125.4°2.9°
H2'2C2'C1'H1'144.2°124.0°
C1'N11C21C61174.8°179.8°
C1'N11C21O214.2°0.2°
C1'N11C21N31177.7°179.8°
C1'N11C61C51178.5°180.0°
C1'N11C61H611.5°0.1°
H1'C1'N11C215.7°174.3°
H1'C1'N11C61179.3°5.5°
N11C21O21N31178.2°179.6°
N11C21N31C412.1°0.5°
N11C21N31H31177.9°179.7°
C21N11C61C513.5°0.2°
C21N11C61H61176.5°179.7°
C61N11C21O21179.0°180.0°
C61N11C21N312.9°0.4°
N11C61C51C413.0°0.0°
N11C61C51C5A179.0°180.0°
N11C61C51H61180.0°179.9°
O21C21N31C41179.7°180.0°
O21C21N31H310.3°0.2°
C21N31C41H31180.0°179.8°
C21N31C41O41179.8°179.7°
C21N31C41C511.7°0.2°
N31C41O41C51178.5°180.0°
N31C41C51C5A179.9°180.0°
N31C41C51C612.1°0.0°
H31N31C41O410.2°0.1°
H31N31C41C51178.3°180.0°
O41C41C51C5A1.4°0.0°
O41C41C51C61179.4°180.0°
C41C51C5AC61177.9°180.0°
C41C51C5AH5A1104.4°89.9°
C41C51C5AH5A2135.6°30.0°
C41C51C5AH5A315.6°150.0°
C41C51C61H61177.0°180.0°
C51C5AH5A1H5A2120.0°119.9°
C51C5AH5A1H5A3120.0°120.0°
C51C5AH5A2H5A3120.0°120.0°
C5AC51C61H611.0°0.0°
C61C51C5AH5A177.7°90.1°
C61C51C5AH5A242.3°150.0°
C61C51C5AH5A3162.3°30.0°
H5A1C5AH5A2H5A3120.0°120.1°

223532

PDB entries from 2024-08-07

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