TC5
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C5 | C4 | sing | 1.53Å | 1.50Å | |
C4 | C3 | sing | 1.53Å | 1.56Å | |
C3 | N | sing | 1.47Å | 1.43Å | |
N | P | sing | 1.68Å | 1.86Å | |
P | O2 | doub | 1.48Å | 1.52Å | |
P | O3 | sing | 1.61Å | 1.78Å | |
P | OXT | sing | 1.61Å | 1.66Å | |
O3 | C1 | sing | 1.43Å | 1.46Å | |
C1 | C2 | sing | 1.53Å | 1.57Å | |
C5 | H51C | sing | 1.09Å | 1.10Å | |
C5 | H52C | sing | 1.09Å | 1.10Å | |
C5 | H53C | sing | 1.09Å | 1.10Å | |
C4 | H41C | sing | 1.09Å | 1.10Å | |
C4 | H42C | sing | 1.09Å | 1.10Å | |
C3 | H31C | sing | 1.09Å | 1.10Å | |
C3 | H32C | sing | 1.09Å | 1.10Å | |
N | H | sing | 1.01Å | 1.00Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
C1 | H11C | sing | 1.09Å | 1.10Å | |
C1 | H12C | sing | 1.09Å | 1.10Å | |
C2 | H21C | sing | 1.09Å | 1.10Å | |
C2 | H22C | sing | 1.09Å | 1.10Å | |
C2 | H23C | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5 | C4 | C3 | 106.4° | 109.5° |
C4 | C5 | H51C | 109.5° | 109.5° |
C4 | C5 | H52C | 109.5° | 109.5° |
C4 | C5 | H53C | 109.5° | 109.5° |
C5 | C4 | H41C | 110.5° | 109.5° |
C5 | C4 | H42C | 111.2° | 109.5° |
C4 | C3 | N | 101.5° | 109.5° |
C3 | C4 | H41C | 110.5° | 109.5° |
C3 | C4 | H42C | 111.2° | 109.5° |
C4 | C3 | H31C | 112.2° | 109.5° |
C4 | C3 | H32C | 113.9° | 109.5° |
C3 | N | P | 123.3° | 111.0° |
N | C3 | H31C | 112.2° | 109.5° |
N | C3 | H32C | 113.9° | 109.5° |
C3 | N | H | 105.1° | 111.0° |
N | P | O2 | 114.1° | 109.5° |
N | P | O3 | 111.2° | 109.5° |
N | P | OXT | 103.3° | 109.5° |
P | N | H | 105.1° | 111.0° |
O2 | P | O3 | 109.9° | 109.5° |
O2 | P | OXT | 112.1° | 109.4° |
O3 | P | OXT | 105.9° | 109.5° |
P | O3 | C1 | 122.2° | 123.0° |
P | OXT | HXT | 109.5° | 114.0° |
O3 | C1 | C2 | 109.6° | 109.5° |
O3 | C1 | H11C | 109.4° | 109.5° |
O3 | C1 | H12C | 109.4° | 109.4° |
C2 | C1 | H11C | 109.4° | 109.5° |
C2 | C1 | H12C | 109.4° | 109.5° |
C1 | C2 | H21C | 109.5° | 109.5° |
C1 | C2 | H22C | 109.5° | 109.5° |
C1 | C2 | H23C | 109.4° | 109.5° |
H51C | C5 | H52C | 109.5° | 109.5° |
H51C | C5 | H53C | 109.4° | 109.4° |
H52C | C5 | H53C | 109.5° | 109.5° |
H41C | C4 | H42C | 107.1° | 109.4° |
H31C | C3 | H32C | 103.5° | 109.4° |
H11C | C1 | H12C | 109.6° | 109.4° |
H21C | C2 | H22C | 109.5° | 109.5° |
H21C | C2 | H23C | 109.5° | 109.4° |
H22C | C2 | H23C | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C5 | C4 | C3 | H41C | 120.0° | 120.0° |
C5 | C4 | C3 | H42C | 121.2° | 120.0° |
C5 | C4 | C3 | N | 132.3° | 180.0° |
C4 | C5 | H51C | H52C | 120.0° | 120.0° |
C4 | C5 | H51C | H53C | 120.0° | 120.0° |
C4 | C5 | H52C | H53C | 120.0° | 120.0° |
C5 | C4 | H41C | H42C | 121.2° | 120.0° |
C5 | C4 | C3 | H31C | 12.3° | 60.0° |
C5 | C4 | C3 | H32C | 104.9° | 60.0° |
C4 | C3 | N | H31C | 120.0° | 120.0° |
C4 | C3 | N | H32C | 122.8° | 120.0° |
C4 | C3 | N | P | 145.3° | 135.0° |
C3 | C4 | C5 | H51C | 99.8° | 60.0° |
C3 | C4 | C5 | H52C | 140.2° | 60.0° |
C3 | C4 | C5 | H53C | 20.2° | 180.0° |
C3 | C4 | H41C | H42C | 121.3° | 120.0° |
C4 | C3 | H31C | H32C | 123.2° | 120.0° |
C4 | C3 | N | H | 94.7° | 101.0° |
C3 | N | P | H | 120.0° | 124.0° |
C3 | N | P | O2 | 126.0° | 180.0° |
C3 | N | P | O3 | 1.1° | 60.0° |
C3 | N | P | OXT | 112.1° | 60.0° |
N | C3 | C4 | H41C | 107.7° | 60.0° |
N | C3 | C4 | H42C | 11.1° | 60.0° |
N | C3 | H31C | H32C | 123.2° | 120.0° |
N | P | O2 | O3 | 125.6° | 120.0° |
N | P | O2 | OXT | 117.0° | 120.0° |
N | P | O3 | OXT | 111.5° | 120.0° |
N | P | O3 | C1 | 35.2° | 70.0° |
P | N | C3 | H31C | 25.3° | 14.9° |
P | N | C3 | H32C | 91.9° | 105.0° |
N | P | OXT | HXT | 55.2° | 60.0° |
O2 | P | O3 | OXT | 121.2° | 120.0° |
O2 | P | O3 | C1 | 92.0° | 50.0° |
O2 | P | N | H | 114.0° | 56.0° |
O2 | P | OXT | HXT | 178.4° | 180.0° |
P | O3 | C1 | C2 | 177.5° | 180.0° |
O3 | P | N | H | 121.1° | 176.0° |
O3 | P | OXT | HXT | 61.8° | 60.0° |
P | O3 | C1 | H11C | 62.5° | 60.0° |
P | O3 | C1 | H12C | 57.5° | 60.0° |
OXT | P | O3 | C1 | 146.8° | 170.0° |
OXT | P | N | H | 7.9° | 64.0° |
O3 | C1 | C2 | H11C | 120.0° | 120.0° |
O3 | C1 | C2 | H12C | 119.9° | 120.0° |
O3 | C1 | H11C | H12C | 120.0° | 119.9° |
O3 | C1 | C2 | H21C | 90.1° | 180.0° |
O3 | C1 | C2 | H22C | 29.9° | 60.0° |
O3 | C1 | C2 | H23C | 149.9° | 60.0° |
C2 | C1 | H11C | H12C | 120.0° | 120.0° |
C1 | C2 | H21C | H22C | 120.0° | 120.0° |
C1 | C2 | H21C | H23C | 120.0° | 120.0° |
C1 | C2 | H22C | H23C | 120.0° | 120.0° |
H51C | C5 | H52C | H53C | 119.9° | 120.0° |
H51C | C5 | C4 | H41C | 140.2° | 60.0° |
H51C | C5 | C4 | H42C | 21.4° | 180.0° |
H52C | C5 | C4 | H41C | 20.2° | 180.0° |
H52C | C5 | C4 | H42C | 98.6° | 60.0° |
H53C | C5 | C4 | H41C | 99.8° | 60.0° |
H53C | C5 | C4 | H42C | 141.4° | 60.0° |
H41C | C4 | C3 | H31C | 132.3° | 180.0° |
H41C | C4 | C3 | H32C | 15.1° | 60.0° |
H42C | C4 | C3 | H31C | 108.9° | 60.0° |
H42C | C4 | C3 | H32C | 133.9° | 180.0° |
H31C | C3 | N | H | 145.4° | 138.9° |
H32C | C3 | N | H | 28.2° | 19.0° |
H11C | C1 | C2 | H21C | 149.9° | 59.9° |
H11C | C1 | C2 | H22C | 90.0° | 180.0° |
H11C | C1 | C2 | H23C | 29.9° | 60.0° |
H12C | C1 | C2 | H21C | 29.8° | 60.1° |
H12C | C1 | C2 | H22C | 149.9° | 59.9° |
H12C | C1 | C2 | H23C | 90.1° | NaN° |
H21C | C2 | H22C | H23C | 120.0° | 119.9° |