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TC5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5C4sing1.53Å1.50Å
C4C3sing1.53Å1.56Å
C3Nsing1.47Å1.43Å
NPsing1.68Å1.86Å
PO2doub1.48Å1.52Å
PO3sing1.61Å1.78Å
POXTsing1.61Å1.66Å
O3C1sing1.43Å1.46Å
C1C2sing1.53Å1.57Å
C5H51Csing1.09Å1.10Å
C5H52Csing1.09Å1.10Å
C5H53Csing1.09Å1.10Å
C4H41Csing1.09Å1.10Å
C4H42Csing1.09Å1.10Å
C3H31Csing1.09Å1.10Å
C3H32Csing1.09Å1.10Å
NHsing1.01Å1.00Å
OXTHXTsing0.97Å0.95Å
C1H11Csing1.09Å1.10Å
C1H12Csing1.09Å1.10Å
C2H21Csing1.09Å1.10Å
C2H22Csing1.09Å1.10Å
C2H23Csing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5C4C3106.4°109.5°
C4C5H51C109.5°109.5°
C4C5H52C109.5°109.5°
C4C5H53C109.5°109.5°
C5C4H41C110.5°109.5°
C5C4H42C111.2°109.5°
C4C3N101.5°109.5°
C3C4H41C110.5°109.5°
C3C4H42C111.2°109.5°
C4C3H31C112.2°109.5°
C4C3H32C113.9°109.5°
C3NP123.3°111.0°
NC3H31C112.2°109.5°
NC3H32C113.9°109.5°
C3NH105.1°111.0°
NPO2114.1°109.5°
NPO3111.2°109.5°
NPOXT103.3°109.5°
PNH105.1°111.0°
O2PO3109.9°109.5°
O2POXT112.1°109.4°
O3POXT105.9°109.5°
PO3C1122.2°123.0°
POXTHXT109.5°114.0°
O3C1C2109.6°109.5°
O3C1H11C109.4°109.5°
O3C1H12C109.4°109.4°
C2C1H11C109.4°109.5°
C2C1H12C109.4°109.5°
C1C2H21C109.5°109.5°
C1C2H22C109.5°109.5°
C1C2H23C109.4°109.5°
H51CC5H52C109.5°109.5°
H51CC5H53C109.4°109.4°
H52CC5H53C109.5°109.5°
H41CC4H42C107.1°109.4°
H31CC3H32C103.5°109.4°
H11CC1H12C109.6°109.4°
H21CC2H22C109.5°109.5°
H21CC2H23C109.5°109.4°
H22CC2H23C109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5C4C3H41C120.0°120.0°
C5C4C3H42C121.2°120.0°
C5C4C3N132.3°180.0°
C4C5H51CH52C120.0°120.0°
C4C5H51CH53C120.0°120.0°
C4C5H52CH53C120.0°120.0°
C5C4H41CH42C121.2°120.0°
C5C4C3H31C12.3°60.0°
C5C4C3H32C104.9°60.0°
C4C3NH31C120.0°120.0°
C4C3NH32C122.8°120.0°
C4C3NP145.3°135.0°
C3C4C5H51C99.8°60.0°
C3C4C5H52C140.2°60.0°
C3C4C5H53C20.2°180.0°
C3C4H41CH42C121.3°120.0°
C4C3H31CH32C123.2°120.0°
C4C3NH94.7°101.0°
C3NPH120.0°124.0°
C3NPO2126.0°180.0°
C3NPO31.1°60.0°
C3NPOXT112.1°60.0°
NC3C4H41C107.7°60.0°
NC3C4H42C11.1°60.0°
NC3H31CH32C123.2°120.0°
NPO2O3125.6°120.0°
NPO2OXT117.0°120.0°
NPO3OXT111.5°120.0°
NPO3C135.2°70.0°
PNC3H31C25.3°14.9°
PNC3H32C91.9°105.0°
NPOXTHXT55.2°60.0°
O2PO3OXT121.2°120.0°
O2PO3C192.0°50.0°
O2PNH114.0°56.0°
O2POXTHXT178.4°180.0°
PO3C1C2177.5°180.0°
O3PNH121.1°176.0°
O3POXTHXT61.8°60.0°
PO3C1H11C62.5°60.0°
PO3C1H12C57.5°60.0°
OXTPO3C1146.8°170.0°
OXTPNH7.9°64.0°
O3C1C2H11C120.0°120.0°
O3C1C2H12C119.9°120.0°
O3C1H11CH12C120.0°119.9°
O3C1C2H21C90.1°180.0°
O3C1C2H22C29.9°60.0°
O3C1C2H23C149.9°60.0°
C2C1H11CH12C120.0°120.0°
C1C2H21CH22C120.0°120.0°
C1C2H21CH23C120.0°120.0°
C1C2H22CH23C120.0°120.0°
H51CC5H52CH53C119.9°120.0°
H51CC5C4H41C140.2°60.0°
H51CC5C4H42C21.4°180.0°
H52CC5C4H41C20.2°180.0°
H52CC5C4H42C98.6°60.0°
H53CC5C4H41C99.8°60.0°
H53CC5C4H42C141.4°60.0°
H41CC4C3H31C132.3°180.0°
H41CC4C3H32C15.1°60.0°
H42CC4C3H31C108.9°60.0°
H42CC4C3H32C133.9°180.0°
H31CC3NH145.4°138.9°
H32CC3NH28.2°19.0°
H11CC1C2H21C149.9°59.9°
H11CC1C2H22C90.0°180.0°
H11CC1C2H23C29.9°60.0°
H12CC1C2H21C29.8°60.1°
H12CC1C2H22C149.9°59.9°
H12CC1C2H23C90.1°NaN°
H21CC2H22CH23C120.0°119.9°

225681

PDB entries from 2024-10-02

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