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Summary Geometry Related PDB entries

TC3

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	C1	sing	1.53Å	1.53Å
C1	O3	sing	1.43Å	1.38Å
O3	P	sing	1.61Å	1.58Å
P	O2	doub	1.48Å	1.45Å
P	N	sing	1.68Å	1.63Å
P	OXT	sing	1.61Å	1.65Å
N	C3	sing	1.47Å	1.49Å
C2	H21C	sing	1.09Å	1.10Å
C2	H22C	sing	1.09Å	1.10Å
C2	H23C	sing	1.09Å	1.10Å
C1	H11C	sing	1.09Å	1.10Å
C1	H12C	sing	1.09Å	1.10Å
N	HN1	sing	1.01Å	1.00Å
OXT	HXT	sing	0.97Å	0.95Å
C3	H31C	sing	1.09Å	1.10Å
C3	H32C	sing	1.09Å	1.10Å
C3	H33C	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O3	103.5°	109.5°
C1	C2	H21C	109.5°	109.5°
C1	C2	H22C	109.5°	109.5°
C1	C2	H23C	109.5°	109.4°
C2	C1	H11C	111.5°	109.5°
C2	C1	H12C	112.8°	109.5°
C1	O3	P	126.4°	123.0°
O3	C1	H11C	111.5°	109.4°
O3	C1	H12C	112.7°	109.4°
O3	P	O2	106.7°	109.4°
O3	P	N	107.6°	109.5°
O3	P	OXT	104.8°	109.5°
O2	P	N	121.2°	109.5°
O2	P	OXT	113.0°	109.5°
N	P	OXT	102.2°	109.5°
P	N	C3	117.1°	111.0°
P	N	HN1	107.0°	111.0°
P	OXT	HXT	109.5°	114.0°
C3	N	HN1	107.0°	111.0°
N	C3	H31C	109.5°	109.5°
N	C3	H32C	109.5°	109.5°
N	C3	H33C	109.5°	109.4°
H21C	C2	H22C	109.4°	109.5°
H21C	C2	H23C	109.4°	109.5°
H22C	C2	H23C	109.5°	109.4°
H11C	C1	H12C	105.0°	109.4°
H31C	C3	H32C	109.4°	109.5°
H31C	C3	H33C	109.5°	109.4°
H32C	C3	H33C	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O3	H11C	120.0°	120.0°
C2	C1	O3	H12C	122.2°	120.1°
C2	C1	O3	P	125.0°	180.0°
C1	C2	H21C	H22C	120.0°	120.0°
C1	C2	H21C	H23C	120.0°	120.0°
C1	C2	H22C	H23C	120.0°	119.9°
C2	C1	H11C	H12C	122.4°	120.1°
C1	O3	P	O2	137.5°	45.1°
C1	O3	P	N	5.9°	75.0°
C1	O3	P	OXT	102.4°	165.0°
O3	C1	C2	H21C	4.0°	60.0°
O3	C1	C2	H22C	123.9°	60.0°
O3	C1	C2	H23C	116.0°	180.0°
O3	C1	H11C	H12C	122.4°	119.9°
O3	P	O2	N	123.5°	120.1°
O3	P	O2	OXT	114.7°	120.0°
O3	P	N	OXT	110.1°	120.0°
O3	P	N	C3	93.5°	60.0°
P	O3	C1	H11C	5.0°	60.0°
P	O3	C1	H12C	112.8°	59.9°
O3	P	N	HN1	26.5°	176.1°
O3	P	OXT	HXT	65.1°	60.0°
O2	P	N	OXT	126.8°	120.0°
O2	P	N	C3	29.6°	180.0°
O2	P	N	HN1	149.6°	56.1°
O2	P	OXT	HXT	179.1°	180.0°
P	N	C3	HN1	120.0°	123.9°
N	P	OXT	HXT	47.1°	60.0°
P	N	C3	H31C	39.5°	60.0°
P	N	C3	H32C	80.5°	60.0°
P	N	C3	H33C	159.5°	179.9°
OXT	P	N	C3	156.5°	60.0°
OXT	P	N	HN1	83.5°	63.9°
N	C3	H31C	H32C	120.0°	120.0°
N	C3	H31C	H33C	120.0°	119.9°
N	C3	H32C	H33C	120.0°	120.0°
H21C	C2	H22C	H23C	120.0°	120.1°
H21C	C2	C1	H11C	123.9°	60.0°
H21C	C2	C1	H12C	118.2°	180.0°
H22C	C2	C1	H11C	116.1°	180.0°
H22C	C2	C1	H12C	1.7°	60.0°
H23C	C2	C1	H11C	4.0°	60.1°
H23C	C2	C1	H12C	121.8°	60.0°
HN1	N	C3	H31C	159.4°	176.0°
HN1	N	C3	H32C	39.4°	63.9°
HN1	N	C3	H33C	80.5°	56.1°
H31C	C3	H32C	H33C	120.0°	120.0°

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