TAL
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.40Å | |
O5' | H5' | sing | 0.97Å | 0.95Å | |
C5' | C6' | sing | 1.53Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.54Å | |
C5' | H1 | sing | 1.09Å | 1.12Å | |
C6' | H6'1 | sing | 1.09Å | 1.12Å | |
C6' | H6'2 | sing | 1.09Å | 1.12Å | |
C6' | H6'3 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.54Å | 1.54Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.43Å | |
C1' | N9 | sing | 1.46Å | 1.50Å | |
C1' | C2' | sing | 1.55Å | 1.57Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.36Å | 1.35Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.42Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.36Å | 1.38Å | Aromatic |
C5 | C4 | doub | 1.41Å | 1.38Å | Aromatic |
C5 | C6 | sing | 1.40Å | 1.41Å | Aromatic |
C4 | N3 | sing | 1.33Å | 1.38Å | Aromatic |
N3 | C2 | doub | 1.32Å | 1.35Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.35Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N1 | C6 | doub | 1.32Å | 1.35Å | Aromatic |
C6 | C7 | sing | 1.51Å | 1.31Å | |
C7 | H71 | sing | 1.09Å | 1.12Å | |
C7 | H72 | sing | 1.09Å | 1.11Å | |
C7 | H73 | sing | 1.09Å | 1.11Å | |
C2' | O2' | sing | 1.43Å | 1.46Å | |
C2' | C3' | sing | 1.55Å | 1.57Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | H3 | sing | 0.97Å | 0.95Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | H4 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | H5' | 109.0° | 106.8° |
O5' | C5' | C6' | 109.0° | 109.4° |
O5' | C5' | C4' | 110.5° | 109.5° |
O5' | C5' | H1 | 109.6° | 109.5° |
C6' | C5' | C4' | 110.8° | 109.5° |
C6' | C5' | H1 | 109.2° | 109.4° |
C5' | C6' | H6'1 | 109.0° | 109.5° |
C5' | C6' | H6'2 | 112.4° | 109.5° |
C5' | C6' | H6'3 | 112.4° | 109.5° |
C4' | C5' | H1 | 107.7° | 109.5° |
C5' | C4' | O4' | 114.5° | 109.9° |
C5' | C4' | C3' | 115.5° | 109.9° |
C5' | C4' | H4' | 99.8° | 109.9° |
H6'1 | C6' | H6'2 | 112.3° | 109.5° |
H6'1 | C6' | H6'3 | 112.4° | 109.5° |
H6'2 | C6' | H6'3 | 98.0° | 109.4° |
O4' | C4' | C3' | 104.0° | 107.4° |
O4' | C4' | H4' | 112.2° | 109.9° |
C4' | O4' | C1' | 110.1° | 107.0° |
C3' | C4' | H4' | 111.2° | 109.8° |
C4' | C3' | C2' | 102.9° | 104.1° |
C4' | C3' | O3' | 108.0° | 110.8° |
C4' | C3' | H3' | 115.1° | 110.5° |
O4' | C1' | N9 | 108.1° | 110.7° |
O4' | C1' | C2' | 105.8° | 103.5° |
O4' | C1' | H1' | 116.1° | 110.6° |
N9 | C1' | C2' | 118.0° | 110.8° |
N9 | C1' | H1' | 103.5° | 110.6° |
C1' | N9 | C8 | 124.4° | 126.2° |
C1' | N9 | C4 | 132.2° | 126.3° |
C2' | C1' | H1' | 105.8° | 110.6° |
C1' | C2' | O2' | 115.4° | 111.0° |
C1' | C2' | C3' | 104.8° | 102.1° |
C1' | C2' | H2' | 111.5° | 110.9° |
C8 | N9 | C4 | 103.3° | 107.5° |
N9 | C8 | N7 | 117.2° | 110.1° |
N9 | C8 | H8 | 122.9° | 125.0° |
N9 | C4 | C5 | 105.7° | 106.0° |
N9 | C4 | N3 | 128.9° | 135.0° |
N7 | C8 | H8 | 119.9° | 124.9° |
C8 | N7 | C5 | 102.8° | 109.4° |
N7 | C5 | C4 | 111.0° | 107.0° |
N7 | C5 | C6 | 132.3° | 134.8° |
C4 | C5 | C6 | 116.8° | 118.3° |
C5 | C4 | N3 | 125.4° | 119.0° |
C5 | C6 | N1 | 119.7° | 118.6° |
C5 | C6 | C7 | 121.4° | 120.7° |
C4 | N3 | C2 | 112.4° | 120.5° |
N3 | C2 | N1 | 127.2° | 122.4° |
N3 | C2 | H2 | 116.7° | 118.8° |
N1 | C2 | H2 | 116.1° | 118.8° |
C2 | N1 | C6 | 118.6° | 121.3° |
N1 | C6 | C7 | 118.9° | 120.7° |
C6 | C7 | H71 | 121.4° | 109.5° |
C6 | C7 | H72 | 108.0° | 109.5° |
C6 | C7 | H73 | 108.0° | 109.5° |
H71 | C7 | H72 | 107.9° | 109.4° |
H71 | C7 | H73 | 108.0° | 109.4° |
H72 | C7 | H73 | 101.9° | 109.5° |
O2' | C2' | C3' | 116.4° | 110.9° |
O2' | C2' | H2' | 98.5° | 110.8° |
C2' | O2' | H3 | 115.3° | 106.8° |
C3' | C2' | H2' | 110.3° | 110.9° |
C2' | C3' | O3' | 111.3° | 110.4° |
C2' | C3' | H3' | 112.1° | 110.5° |
O3' | C3' | H3' | 107.3° | 110.4° |
C3' | O3' | H4 | 108.0° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C6' | C4' | 121.8° | 120.0° |
O5' | C5' | C6' | H1 | 119.7° | 120.0° |
O5' | C5' | C4' | H1 | 119.7° | 120.1° |
O5' | C5' | C6' | H6'1 | 179.9° | 60.0° |
O5' | C5' | C6' | H6'2 | 54.8° | 60.0° |
O5' | C5' | C6' | H6'3 | 54.7° | 180.0° |
O5' | C5' | C4' | O4' | 54.7° | 58.2° |
O5' | C5' | C4' | C3' | 175.5° | 59.7° |
O5' | C5' | C4' | H4' | 65.3° | 179.3° |
H5' | O5' | C5' | C6' | 180.0° | 60.0° |
H5' | O5' | C5' | C4' | 58.0° | 60.0° |
H5' | O5' | C5' | H1 | 60.5° | 180.0° |
C6' | C5' | C4' | H1 | 119.4° | 119.9° |
C5' | C6' | H6'1 | H6'2 | 125.2° | 120.0° |
C5' | C6' | H6'1 | H6'3 | 125.3° | 120.0° |
C5' | C6' | H6'2 | H6'3 | 118.3° | 120.0° |
C6' | C5' | C4' | O4' | 175.6° | 61.7° |
C6' | C5' | C4' | C3' | 63.6° | 179.7° |
C6' | C5' | C4' | H4' | 55.6° | 59.3° |
C4' | C5' | C6' | H6'1 | 58.3° | 180.0° |
C4' | C5' | C6' | H6'2 | 176.6° | 60.0° |
C4' | C5' | C6' | H6'3 | 67.1° | 60.0° |
C5' | C4' | O4' | C3' | 127.0° | 119.5° |
C5' | C4' | O4' | H4' | 112.8° | 121.1° |
C5' | C4' | C3' | H4' | 112.7° | 121.0° |
C5' | C4' | O4' | C1' | 91.4° | 145.9° |
C5' | C4' | C3' | C2' | 93.5° | 121.4° |
C5' | C4' | C3' | O3' | 148.7° | 119.9° |
C5' | C4' | C3' | H3' | 28.8° | 2.8° |
H1 | C5' | C6' | H6'1 | 60.2° | 60.1° |
H1 | C5' | C6' | H6'2 | 64.9° | 180.0° |
H1 | C5' | C6' | H6'3 | 174.4° | 60.0° |
H1 | C5' | C4' | O4' | 65.0° | 178.3° |
H1 | C5' | C4' | C3' | 55.8° | 60.4° |
H1 | C5' | C4' | H4' | 175.0° | 60.6° |
H6'1 | C6' | H6'2 | H6'3 | 118.3° | 120.0° |
O4' | C4' | C3' | H4' | 120.9° | 119.4° |
C4' | O4' | C1' | N9 | 105.0° | 158.7° |
C4' | O4' | C1' | C2' | 22.2° | 40.0° |
C4' | O4' | C1' | H1' | 139.3° | 78.4° |
O4' | C4' | C3' | C2' | 32.9° | 1.9° |
O4' | C4' | C3' | O3' | 84.9° | 120.6° |
O4' | C4' | C3' | H3' | 155.1° | 116.7° |
C3' | C4' | O4' | C1' | 35.6° | 26.4° |
C4' | C3' | C2' | C1' | 19.9° | 20.9° |
C4' | C3' | C2' | O2' | 148.7° | 139.2° |
C4' | C3' | C2' | O3' | 115.5° | 119.0° |
C4' | C3' | C2' | H3' | 124.3° | 118.6° |
C4' | C3' | C2' | H2' | 100.2° | 97.2° |
C4' | C3' | O3' | H3' | 124.7° | 122.7° |
C4' | C3' | O3' | H4 | 180.0° | 176.2° |
H4' | C4' | O4' | C1' | 155.8° | 93.0° |
H4' | C4' | C3' | C2' | 153.8° | 117.5° |
H4' | C4' | C3' | O3' | 36.0° | 1.1° |
H4' | C4' | C3' | H3' | 83.9° | 123.9° |
O4' | C1' | N9 | C2' | 119.9° | 114.2° |
O4' | C1' | N9 | H1' | 123.7° | 122.9° |
O4' | C1' | C2' | H1' | 123.8° | 118.4° |
O4' | C1' | N9 | C8 | 73.4° | 28.5° |
O4' | C1' | N9 | C4 | 106.4° | 151.6° |
O4' | C1' | C2' | O2' | 129.2° | 155.2° |
O4' | C1' | C2' | C3' | 0.2° | 37.0° |
O4' | C1' | C2' | H2' | 119.6° | 81.2° |
N9 | C1' | C2' | H1' | 115.1° | 122.9° |
C1' | N9 | C8 | C4 | 179.9° | 179.9° |
C1' | N9 | C8 | N7 | 179.8° | 180.0° |
C1' | N9 | C8 | H8 | 0.2° | 0.1° |
C1' | N9 | C4 | C5 | 179.7° | 179.8° |
C1' | N9 | C4 | N3 | 0.2° | 0.6° |
N9 | C1' | C2' | O2' | 109.7° | 86.1° |
N9 | C1' | C2' | C3' | 120.9° | 155.7° |
N9 | C1' | C2' | H2' | 1.5° | 37.5° |
C2' | C1' | N9 | C8 | 166.7° | 85.7° |
C2' | C1' | N9 | C4 | 13.5° | 94.1° |
C1' | C2' | O2' | C3' | 123.5° | 112.7° |
C1' | C2' | O2' | H2' | 118.7° | 123.6° |
C1' | C2' | C3' | H2' | 120.1° | 118.2° |
C1' | C2' | O2' | H3 | 180.0° | 180.0° |
C1' | C2' | C3' | O3' | 95.6° | 98.0° |
C1' | C2' | C3' | H3' | 144.2° | 139.5° |
H1' | C1' | N9 | C8 | 50.3° | 151.4° |
H1' | C1' | N9 | C4 | 129.9° | 28.8° |
H1' | C1' | C2' | O2' | 5.4° | 36.8° |
H1' | C1' | C2' | C3' | 124.0° | 81.4° |
H1' | C1' | C2' | H2' | 116.6° | 160.4° |
N9 | C8 | N7 | H8 | 180.0° | 179.9° |
N9 | C8 | N7 | C5 | 0.0° | 0.1° |
C8 | N9 | C4 | C5 | 0.2° | 0.3° |
C8 | N9 | C4 | N3 | 180.0° | 179.5° |
C4 | N9 | C8 | N7 | 0.1° | 0.1° |
C4 | N9 | C8 | H8 | 179.9° | 179.8° |
N9 | C4 | C5 | N7 | 0.2° | 0.3° |
N9 | C4 | C5 | N3 | 179.8° | 179.4° |
N9 | C4 | C5 | C6 | 179.8° | 179.9° |
N9 | C4 | N3 | C2 | 179.8° | 179.7° |
C8 | N7 | C5 | C4 | 0.1° | 0.3° |
C8 | N7 | C5 | C6 | 179.9° | 180.0° |
H8 | C8 | N7 | C5 | 180.0° | 180.0° |
N7 | C5 | C4 | C6 | 180.0° | 179.8° |
N7 | C5 | C4 | N3 | 180.0° | 179.7° |
N7 | C5 | C6 | N1 | 179.9° | 179.9° |
N7 | C5 | C6 | C7 | 0.0° | 0.0° |
C5 | C4 | N3 | C2 | 0.0° | 0.5° |
C4 | C5 | C6 | N1 | 0.1° | 0.2° |
C4 | C5 | C6 | C7 | 180.0° | 179.7° |
C6 | C5 | C4 | N3 | 0.0° | 0.5° |
C5 | C6 | N1 | C2 | 0.1° | 0.1° |
C5 | C6 | N1 | C7 | 180.0° | 179.9° |
C5 | C6 | C7 | H71 | 180.0° | 90.0° |
C5 | C6 | C7 | H72 | 54.8° | 150.1° |
C5 | C6 | C7 | H73 | 54.7° | 30.0° |
C4 | N3 | C2 | N1 | 0.0° | 0.2° |
C4 | N3 | C2 | H2 | 180.0° | 179.8° |
N3 | C2 | N1 | H2 | 180.0° | 180.0° |
N3 | C2 | N1 | C6 | 0.0° | 0.1° |
C2 | N1 | C6 | C7 | 180.0° | 180.0° |
H2 | C2 | N1 | C6 | 180.0° | 179.9° |
N1 | C6 | C7 | H71 | 0.0° | 89.9° |
N1 | C6 | C7 | H72 | 125.2° | 30.0° |
N1 | C6 | C7 | H73 | 125.3° | 150.1° |
C6 | C7 | H71 | H72 | 125.2° | 120.0° |
C6 | C7 | H71 | H73 | 125.3° | 120.0° |
C6 | C7 | H72 | H73 | 113.6° | 120.1° |
H71 | C7 | H72 | H73 | 113.6° | 119.9° |
O2' | C2' | C3' | H2' | 111.0° | 123.6° |
O2' | C2' | C3' | O3' | 33.3° | 20.2° |
O2' | C2' | C3' | H3' | 87.0° | 102.2° |
C3' | C2' | O2' | H3 | 56.5° | 67.3° |
C2' | C3' | O3' | H3' | 123.0° | 122.5° |
C2' | C3' | O3' | H4 | 67.8° | 61.4° |
H2' | C2' | O2' | H3 | 61.3° | 56.4° |
H2' | C2' | C3' | O3' | 144.3° | 143.8° |
H2' | C2' | C3' | H3' | 24.0° | 21.4° |
H3' | C3' | O3' | H4 | 55.2° | 61.0° |