T7C
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5 | C12 | doub | 1.21Å | 1.21Å | |
C13 | C12 | sing | 1.51Å | 1.52Å | |
C13 | N | sing | 1.47Å | 1.45Å | |
C12 | N1 | sing | 1.35Å | 1.41Å | |
S1 | C1 | sing | 1.81Å | 1.82Å | |
S1 | C4 | sing | 1.81Å | 1.80Å | |
C1 | CA | sing | 1.53Å | 1.51Å | |
CA | N | sing | 1.47Å | 1.46Å | |
C4 | C2 | sing | 1.53Å | 1.51Å | |
O | C | doub | 1.21Å | 1.33Å | |
C2 | C | sing | 1.51Å | 1.48Å | |
CA | HA2 | sing | 1.09Å | 1.10Å | |
CA | HA3 | sing | 1.09Å | 1.10Å | |
C13 | H3 | sing | 1.09Å | 1.10Å | |
C13 | H4 | sing | 1.09Å | 1.10Å | |
C1 | H5 | sing | 1.09Å | 1.10Å | |
C1 | H6 | sing | 1.09Å | 1.10Å | |
C2 | H7 | sing | 1.09Å | 1.10Å | |
C2 | H8 | sing | 1.09Å | 1.10Å | |
C4 | H11 | sing | 1.09Å | 1.10Å | |
C4 | H12 | sing | 1.09Å | 1.10Å | |
N1 | H13 | sing | 0.97Å | 1.00Å | |
N1 | H14 | sing | 0.97Å | 1.00Å | |
N | H | sing | 1.01Å | 1.00Å | |
C | OXT | sing | 1.34Å | 1.45Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O5 | C12 | C13 | 119.8° | 120.0° |
O5 | C12 | N1 | 121.1° | 120.0° |
C12 | C13 | N | 113.4° | 109.5° |
C13 | C12 | N1 | 119.0° | 120.0° |
C12 | C13 | H3 | 108.5° | 109.5° |
C12 | C13 | H4 | 108.5° | 109.5° |
C13 | N | CA | 117.8° | 111.0° |
N | C13 | H3 | 108.5° | 109.4° |
N | C13 | H4 | 108.5° | 109.4° |
C13 | N | H | 107.3° | 111.0° |
C12 | N1 | H13 | 120.0° | 120.0° |
C12 | N1 | H14 | 120.0° | 120.0° |
C1 | S1 | C4 | 103.2° | 103.0° |
S1 | C1 | CA | 110.0° | 109.4° |
S1 | C1 | H5 | 109.3° | 109.5° |
S1 | C1 | H6 | 109.3° | 109.5° |
S1 | C4 | C2 | 113.0° | 109.5° |
S1 | C4 | H11 | 108.6° | 109.5° |
S1 | C4 | H12 | 108.6° | 109.5° |
C1 | CA | N | 110.5° | 109.5° |
C1 | CA | HA2 | 109.2° | 109.5° |
C1 | CA | HA3 | 109.2° | 109.5° |
CA | C1 | H5 | 109.3° | 109.5° |
CA | C1 | H6 | 109.4° | 109.5° |
N | CA | HA2 | 109.2° | 109.4° |
N | CA | HA3 | 109.2° | 109.5° |
CA | N | H | 107.3° | 111.0° |
C4 | C2 | C | 111.5° | 109.5° |
C4 | C2 | H7 | 109.0° | 109.5° |
C4 | C2 | H8 | 109.0° | 109.4° |
C2 | C4 | H11 | 108.6° | 109.5° |
C2 | C4 | H12 | 108.6° | 109.4° |
O | C | C2 | 123.0° | 120.0° |
O | C | OXT | 118.3° | 119.9° |
C | C2 | H7 | 109.0° | 109.5° |
C | C2 | H8 | 108.9° | 109.5° |
C2 | C | OXT | 118.7° | 120.0° |
HA2 | CA | HA3 | 109.5° | 109.5° |
H3 | C13 | H4 | 109.5° | 109.5° |
H5 | C1 | H6 | 109.5° | 109.5° |
H7 | C2 | H8 | 109.5° | 109.5° |
H11 | C4 | H12 | 109.5° | 109.5° |
H13 | N1 | H14 | 120.0° | 120.0° |
C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5 | C12 | C13 | N1 | 176.5° | 179.7° |
O5 | C12 | C13 | N | 165.0° | 0.3° |
O5 | C12 | C13 | H3 | 44.5° | 119.6° |
O5 | C12 | C13 | H4 | 74.4° | 120.3° |
O5 | C12 | N1 | H13 | 0.0° | 179.7° |
O5 | C12 | N1 | H14 | 180.0° | 0.3° |
C12 | C13 | N | H3 | 120.6° | 120.0° |
C12 | C13 | N | H4 | 120.6° | 120.0° |
C12 | C13 | N | CA | 110.6° | 180.0° |
C12 | C13 | H3 | H4 | 118.2° | 120.1° |
C13 | C12 | N1 | H13 | 176.4° | 0.0° |
C13 | C12 | N1 | H14 | 3.6° | 180.0° |
C12 | C13 | N | H | 10.6° | 56.0° |
N | C13 | C12 | N1 | 18.5° | 180.0° |
C13 | N | CA | C1 | 88.2° | 180.0° |
C13 | N | CA | H | 121.2° | 124.0° |
C13 | N | CA | HA2 | 31.9° | 60.0° |
C13 | N | CA | HA3 | 151.6° | 60.0° |
N | C13 | H3 | H4 | 118.2° | 120.0° |
N1 | C12 | C13 | H3 | 139.1° | 60.0° |
N1 | C12 | C13 | H4 | 102.1° | 60.1° |
C12 | N1 | H13 | H14 | 180.0° | 180.0° |
S1 | C1 | CA | H5 | 120.1° | 120.0° |
S1 | C1 | CA | H6 | 120.1° | 120.0° |
S1 | C1 | CA | N | 173.2° | 180.0° |
C1 | S1 | C4 | C2 | 56.4° | 180.0° |
S1 | C1 | CA | HA2 | 53.0° | 60.0° |
S1 | C1 | CA | HA3 | 66.7° | 60.0° |
S1 | C1 | H5 | H6 | 119.7° | 120.0° |
C1 | S1 | C4 | H11 | 64.2° | 60.0° |
C1 | S1 | C4 | H12 | 176.9° | 60.1° |
C4 | S1 | C1 | CA | 66.9° | 180.0° |
S1 | C4 | C2 | H11 | 120.5° | 120.0° |
S1 | C4 | C2 | H12 | 120.5° | 120.0° |
S1 | C4 | C2 | C | 62.0° | 180.0° |
C4 | S1 | C1 | H5 | 53.2° | 60.0° |
C4 | S1 | C1 | H6 | 173.0° | 60.0° |
S1 | C4 | C2 | H7 | 58.4° | 60.0° |
S1 | C4 | C2 | H8 | 177.8° | 60.0° |
S1 | C4 | H11 | H12 | 118.4° | 120.0° |
C1 | CA | N | HA2 | 120.2° | 120.0° |
C1 | CA | N | HA3 | 120.2° | 120.1° |
C1 | CA | HA2 | HA3 | 119.6° | 120.0° |
CA | C1 | H5 | H6 | 119.8° | 120.0° |
C1 | CA | N | H | 33.0° | 56.0° |
N | CA | HA2 | HA3 | 119.5° | 120.0° |
CA | N | C13 | H3 | 128.8° | 60.0° |
CA | N | C13 | H4 | 10.0° | 60.1° |
N | CA | C1 | H5 | 66.7° | 60.0° |
N | CA | C1 | H6 | 53.1° | 60.1° |
C4 | C2 | C | O | 46.7° | 0.0° |
C4 | C2 | C | H7 | 120.3° | 120.0° |
C4 | C2 | C | H8 | 120.3° | 120.0° |
C4 | C2 | H7 | H8 | 119.1° | 120.0° |
C2 | C4 | H11 | H12 | 118.4° | 120.0° |
C4 | C2 | C | OXT | 129.6° | 180.0° |
O | C | C2 | OXT | 176.3° | 180.0° |
O | C | C2 | H7 | 167.0° | 120.0° |
O | C | C2 | H8 | 73.6° | 120.0° |
O | C | OXT | HXT | 0.0° | 0.0° |
C | C2 | H7 | H8 | 119.0° | 120.0° |
C | C2 | C4 | H11 | 177.5° | 60.0° |
C | C2 | C4 | H12 | 58.6° | 60.0° |
C2 | C | OXT | HXT | 176.5° | 180.0° |
HA2 | CA | C1 | H5 | 173.1° | 60.0° |
HA2 | CA | C1 | H6 | 67.1° | 180.0° |
HA2 | CA | N | H | 153.1° | 64.0° |
HA3 | CA | C1 | H5 | 53.4° | 180.0° |
HA3 | CA | C1 | H6 | 173.2° | 60.0° |
HA3 | CA | N | H | 87.2° | 176.0° |
H3 | C13 | N | H | 110.0° | 176.0° |
H4 | C13 | N | H | 131.2° | 63.9° |
H7 | C2 | C4 | H11 | 62.2° | 180.0° |
H7 | C2 | C4 | H12 | 178.9° | 60.0° |
H7 | C2 | C | OXT | 9.3° | 60.0° |
H8 | C2 | C4 | H11 | 57.2° | 60.0° |
H8 | C2 | C4 | H12 | 61.7° | 180.0° |
H8 | C2 | C | OXT | 110.1° | 60.0° |