Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

T5Z

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C11C12sing1.53Å1.54Å
C11Nsing1.46Å1.45Å
C12Ssing1.81Å1.81Å
NC10sing1.35Å1.33Å
O2C10doub1.21Å1.23Å
CC1sing1.53Å1.52Å
C10C1sing1.51Å1.52Å
C1Osing1.43Å1.43Å
C1C9sing1.53Å1.52Å
OC2sing1.36Å1.39Å
C2C3doub1.39Å1.41ÅAromatic
C2C8sing1.39Å1.39ÅAromatic
C3C4sing1.39Å1.39ÅAromatic
C8C7doub1.38Å1.38ÅAromatic
C5O1sing1.43Å1.43Å
C4O1sing1.36Å1.37Å
C4C6doub1.39Å1.39ÅAromatic
C7C6sing1.38Å1.39ÅAromatic
C6BRsing1.89Å1.87Å
C3H1sing1.08Å1.08Å
C5H2sing1.09Å1.10Å
C5H3sing1.09Å1.10Å
C5H4sing1.09Å1.10Å
C11H5sing1.09Å1.10Å
C11H6sing1.09Å1.10Å
NH7sing0.97Å1.00Å
CH8sing1.09Å1.10Å
CH9sing1.09Å1.10Å
CH10sing1.09Å1.10Å
C12H11sing1.09Å1.10Å
C12H12sing1.09Å1.10Å
C7H13sing1.08Å1.08Å
C8H14sing1.08Å1.08Å
C9H15sing1.09Å1.10Å
C9H16sing1.09Å1.10Å
C9H17sing1.09Å1.10Å
SH18sing1.35Å1.30Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C12C11N113.2°109.5°
C11C12S111.3°109.5°
C12C11H5108.5°109.5°
C12C11H6108.5°109.4°
C11C12H11109.0°109.5°
C11C12H12109.0°109.4°
C11NC10122.1°120.0°
NC11H5108.5°109.5°
NC11H6108.5°109.5°
C11NH7119.0°120.0°
SC12H11109.0°109.5°
SC12H12109.0°109.5°
C12SH18102.0°103.0°
NC10O2122.2°120.0°
NC10C1117.6°120.0°
C10NH7118.9°120.0°
O2C10C1120.1°120.0°
CC1C10107.5°109.4°
CC1O106.3°109.4°
CC1C9108.6°109.5°
C1CH8109.5°109.5°
C1CH9109.4°109.4°
C1CH10109.4°109.5°
C10C1O111.5°109.5°
C10C1C9112.8°109.5°
OC1C9110.0°109.5°
C1OC2127.4°117.0°
C1C9H15109.5°109.4°
C1C9H16109.5°109.4°
C1C9H17109.4°109.5°
OC2C3123.4°120.0°
OC2C8116.1°120.1°
C3C2C8120.5°119.9°
C2C3C4117.9°119.9°
C2C3H1121.0°120.0°
C2C8C7121.3°120.1°
C2C8H14119.3°119.9°
C3C4O1121.8°120.0°
C3C4C6120.7°120.0°
C4C3H1121.0°120.1°
C8C7C6117.8°120.1°
C8C7H13121.1°119.9°
C7C8H14119.3°120.0°
C5O1C4120.1°117.0°
O1C5H2109.5°109.5°
O1C5H3109.5°109.5°
O1C5H4109.5°109.4°
O1C4C6117.5°120.0°
C4C6C7121.7°120.0°
C4C6BR118.8°120.0°
C7C6BR119.5°120.0°
C6C7H13121.1°120.0°
H2C5H3109.4°109.5°
H2C5H4109.5°109.4°
H3C5H4109.5°109.5°
H5C11H6109.5°109.4°
H8CH9109.5°109.5°
H8CH10109.5°109.5°
H9CH10109.5°109.5°
H11C12H12109.5°109.5°
H15C9H16109.5°109.5°
H15C9H17109.4°109.5°
H16C9H17109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C12C11NH5120.5°120.0°
C12C11NH6120.6°120.0°
C11C12SH11120.3°120.0°
C11C12SH12120.3°119.9°
C12C11NC1087.8°179.9°
C12C11H5H6118.3°120.0°
C12C11NH792.2°0.0°
C11C12H11H12119.2°120.0°
C11C12SH18180.0°180.0°
NC11C12S74.8°180.0°
C11NC10H7180.0°179.9°
C11NC10O28.7°0.0°
C11NC10C1170.0°180.0°
NC11H5H6118.3°120.0°
NC11C12H1145.5°60.0°
NC11C12H12165.0°60.0°
SC12C11H545.8°60.0°
SC12C11H6164.7°60.0°
SC12H11H12119.2°120.0°
NC10O2C1178.7°180.0°
NC10C1C99.7°60.1°
NC10C1O16.4°180.0°
NC10C1C9140.7°59.9°
C10NC11H5151.6°60.0°
C10NC11H632.7°59.9°
O2C10C1C79.1°120.0°
O2C10C1O164.9°0.0°
O2C10C1C940.6°120.0°
O2C10NH7171.4°180.0°
CC1C10O116.1°120.0°
CC1C10C9119.7°120.0°
CC1OC9117.3°120.0°
CC1OC2167.0°179.7°
C1CH8H9120.0°120.0°
C1CH8H10120.0°120.0°
C1CH9H10120.0°120.0°
CC1C9H15180.0°172.1°
CC1C9H1660.0°67.9°
CC1C9H1760.0°52.1°
C10C1OC9125.8°120.1°
C10C1OC276.1°60.4°
C1C10NH79.9°0.1°
C10C1CH8180.0°179.9°
C10C1CH960.0°60.1°
C10C1CH1060.0°59.9°
C10C1C9H1560.9°67.9°
C10C1C9H16179.0°52.1°
C10C1C9H1759.0°172.1°
C1OC2C330.9°174.7°
C1OC2C8150.4°5.1°
OC1CH860.6°59.9°
OC1CH959.5°179.9°
OC1CH10179.5°60.1°
OC1C9H1564.1°52.2°
OC1C9H1655.9°172.1°
OC1C9H17175.9°67.8°
C9C1OC249.7°59.7°
C9C1CH857.7°60.1°
C9C1CH9177.7°59.9°
C9C1CH1062.3°179.9°
C1C9H15H16120.0°119.9°
C1C9H15H17120.0°120.0°
C1C9H16H17120.0°120.0°
OC2C3C8178.6°179.8°
OC2C3C4178.5°179.8°
OC2C8C7178.8°179.7°
OC2C3H11.5°0.2°
OC2C8H141.2°0.2°
C2C3C4H1180.0°180.0°
C3C2C8C70.1°0.1°
C2C3C4O1179.7°180.0°
C2C3C4C60.1°0.0°
C3C2C8H14179.9°180.0°
C8C2C3C40.2°0.0°
C2C8C7H14180.0°179.9°
C2C8C7C60.3°0.1°
C8C2C3H1179.8°180.0°
C2C8C7H13179.6°180.0°
C3C4O1C51.6°0.0°
C3C4O1C6179.6°180.0°
C3C4C6C70.1°0.1°
C3C4C6BR179.1°180.0°
C8C7C6C40.4°0.1°
C8C7C6H13180.0°179.9°
C8C7C6BR178.8°180.0°
C5O1C4C6178.8°180.0°
O1C5H2H3120.0°120.1°
O1C5H2H4120.0°119.9°
O1C5H3H4120.0°120.0°
O1C4C6C7179.5°179.9°
O1C4C6BR1.3°0.0°
O1C4C3H10.3°0.0°
C4O1C5H2180.0°180.0°
C4O1C5H360.0°60.0°
C4O1C5H460.0°60.0°
C4C6C7BR179.2°179.9°
C6C4C3H1179.9°180.0°
C4C6C7H13179.6°180.0°
C6C7C8H14179.6°179.9°
BRC6C7H131.2°0.1°
H2C5H3H4120.0°120.0°
H5C11NH728.4°120.0°
H5C11C12H11166.1°180.0°
H5C11C12H1274.5°60.0°
H6C11NH7147.3°120.0°
H6C11C12H1175.0°60.0°
H6C11C12H1244.4°179.9°
H8CH9H10120.0°120.0°
H11C12SH1859.8°60.0°
H12C12SH1859.7°60.0°
H13C7C8H140.4°0.0°
H15C9H16H17120.0°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon