T5O
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP3 | sing | 1.61Å | 1.48Å | |
| N1 | C6 | sing | 1.37Å | 1.39Å | |
| N1 | C1' | sing | 1.46Å | 1.51Å | |
| C2 | N1 | sing | 1.35Å | 1.38Å | |
| O2 | C2 | doub | 1.22Å | 1.21Å | |
| N3 | C2 | sing | 1.35Å | 1.36Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | C5 | sing | 1.42Å | 1.44Å | |
| O4 | C4 | doub | 1.22Å | 1.22Å | |
| C5 | O5 | sing | 1.36Å | 1.43Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| O5 | C7 | sing | 1.43Å | 1.43Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| OP2 | P | sing | 1.61Å | 1.47Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C7 | HC7 | sing | 1.09Å | 1.10Å | |
| C7 | HC7A | sing | 1.09Å | 1.10Å | |
| C7 | HC7B | sing | 1.09Å | 1.10Å | |
| P | OP1 | doub | 1.48Å | 1.83Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 113.9° |
| OP3 | P | OP2 | 119.3° | 109.5° |
| OP3 | P | O5' | 108.1° | 109.4° |
| OP3 | P | OP1 | 80.9° | 109.5° |
| C6 | N1 | C1' | 121.3° | 119.7° |
| C6 | N1 | C2 | 121.1° | 120.6° |
| N1 | C6 | C5 | 122.6° | 119.6° |
| N1 | C6 | H6 | 118.7° | 120.2° |
| C1' | N1 | C2 | 117.5° | 119.7° |
| N1 | C1' | O4' | 110.4° | 110.4° |
| N1 | C1' | C2' | 112.3° | 110.4° |
| N1 | C1' | H1' | 106.0° | 110.3° |
| N1 | C2 | O2 | 123.4° | 119.5° |
| N1 | C2 | N3 | 115.7° | 121.0° |
| O2 | C2 | N3 | 120.9° | 119.5° |
| C2 | N3 | C4 | 126.0° | 120.3° |
| C2 | N3 | HN3 | 117.0° | 119.8° |
| C4 | N3 | HN3 | 117.0° | 119.8° |
| N3 | C4 | C5 | 116.4° | 119.4° |
| N3 | C4 | O4 | 122.2° | 120.3° |
| C5 | C4 | O4 | 121.4° | 120.3° |
| C4 | C5 | O5 | 116.0° | 120.5° |
| C4 | C5 | C6 | 118.2° | 119.1° |
| O5 | C5 | C6 | 125.8° | 120.5° |
| C5 | O5 | C7 | 113.0° | 117.0° |
| C5 | C6 | H6 | 118.7° | 120.2° |
| O5 | C7 | HC7 | 109.5° | 109.5° |
| O5 | C7 | HC7A | 109.4° | 109.4° |
| O5 | C7 | HC7B | 109.5° | 109.4° |
| O4' | C1' | C2' | 106.7° | 104.8° |
| O4' | C1' | H1' | 111.7° | 110.4° |
| C1' | O4' | C4' | 108.2° | 105.3° |
| C2' | C1' | H1' | 109.8° | 110.5° |
| C1' | C2' | C3' | 101.7° | 104.0° |
| C1' | C2' | H2' | 112.1° | 110.5° |
| C1' | C2' | H2'A | 112.1° | 110.5° |
| C3' | C2' | H2' | 112.1° | 110.5° |
| C3' | C2' | H2'A | 112.1° | 110.5° |
| C2' | C3' | O3' | 114.3° | 110.5° |
| C2' | C3' | H3' | 113.6° | 110.5° |
| C2' | C3' | C4' | 98.4° | 104.1° |
| H2' | C2' | H2'A | 106.7° | 110.6° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP2 | P | O5' | 107.1° | 109.4° |
| OP2 | P | OP1 | 63.8° | 109.5° |
| O3' | C3' | H3' | 103.4° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| O3' | C3' | C4' | 109.4° | 110.5° |
| H3' | C3' | C4' | 118.2° | 110.6° |
| C3' | C4' | C5' | 115.1° | 110.4° |
| C3' | C4' | H4' | 109.8° | 110.4° |
| C3' | C4' | O4' | 103.9° | 104.8° |
| C5' | C4' | H4' | 103.6° | 110.4° |
| C5' | C4' | O4' | 110.0° | 110.4° |
| C4' | C5' | H5' | 109.3° | 109.4° |
| C4' | C5' | H5'A | 109.3° | 109.5° |
| C4' | C5' | O5' | 109.9° | 109.5° |
| H4' | C4' | O4' | 114.9° | 110.4° |
| H5' | C5' | H5'A | 109.6° | 109.4° |
| H5' | C5' | O5' | 109.3° | 109.5° |
| H5'A | C5' | O5' | 109.3° | 109.5° |
| P | O5' | C5' | 120.1° | 123.0° |
| O5' | P | OP1 | 170.0° | 109.5° |
| HC7 | C7 | HC7A | 109.5° | 109.5° |
| HC7 | C7 | HC7B | 109.5° | 109.5° |
| HC7A | C7 | HC7B | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP2 | O5' | 123.0° | 120.0° |
| OP3 | P | OP2 | OP1 | 61.4° | 120.1° |
| OP3 | P | OP2 | HOP2 | 61.4° | 59.9° |
| OP3 | P | O5' | OP1 | 153.2° | 120.0° |
| OP3 | P | O5' | C5' | 43.2° | 175.0° |
| C6 | N1 | C1' | C2 | 179.0° | 179.8° |
| C6 | N1 | C2 | O2 | 179.3° | 180.0° |
| C6 | N1 | C2 | N3 | 1.0° | 0.0° |
| N1 | C6 | C5 | C4 | 0.4° | 0.0° |
| N1 | C6 | C5 | O5 | 179.8° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| C6 | N1 | C1' | O4' | 21.8° | 126.4° |
| C6 | N1 | C1' | C2' | 97.1° | 118.2° |
| C6 | N1 | C1' | H1' | 143.0° | 4.2° |
| C1' | N1 | C2 | O2 | 0.2° | 0.2° |
| C1' | N1 | C2 | N3 | 180.0° | 179.7° |
| C1' | N1 | C6 | C5 | 179.1° | 179.8° |
| C1' | N1 | C6 | H6 | 0.9° | 0.0° |
| N1 | C1' | O4' | C2' | 122.3° | 118.8° |
| N1 | C1' | O4' | H1' | 117.7° | 122.2° |
| N1 | C1' | C2' | H1' | 117.7° | 122.3° |
| N1 | C1' | C2' | C3' | 95.3° | 142.8° |
| N1 | C1' | C2' | H2' | 144.7° | 98.5° |
| N1 | C1' | C2' | H2'A | 24.7° | 24.2° |
| N1 | C1' | O4' | C4' | 124.5° | 159.3° |
| N1 | C2 | O2 | N3 | 179.8° | 179.9° |
| N1 | C2 | N3 | C4 | 1.5° | 0.0° |
| N1 | C2 | N3 | HN3 | 178.5° | 180.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.0° |
| C2 | N1 | C6 | H6 | 179.9° | 179.8° |
| C2 | N1 | C1' | O4' | 159.1° | 53.8° |
| C2 | N1 | C1' | C2' | 81.9° | 61.6° |
| C2 | N1 | C1' | H1' | 38.0° | 176.0° |
| O2 | C2 | N3 | C4 | 178.7° | 180.0° |
| O2 | C2 | N3 | HN3 | 1.3° | 0.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 1.1° | 0.0° |
| C2 | N3 | C4 | O4 | 179.2° | 180.0° |
| N3 | C4 | C5 | O4 | 179.8° | 180.0° |
| N3 | C4 | C5 | O5 | 179.4° | 180.0° |
| N3 | C4 | C5 | C6 | 0.1° | 0.0° |
| HN3 | N3 | C4 | C5 | 179.0° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.8° | 0.1° |
| C4 | C5 | O5 | C6 | 179.5° | 179.9° |
| C4 | C5 | O5 | C7 | 179.1° | 180.0° |
| C4 | C5 | C6 | H6 | 179.6° | 179.7° |
| O4 | C4 | C5 | O5 | 0.3° | 0.0° |
| O4 | C4 | C5 | C6 | 179.8° | 179.9° |
| O5 | C5 | C6 | H6 | 0.2° | 0.2° |
| C5 | O5 | C7 | HC7 | 180.0° | 60.0° |
| C5 | O5 | C7 | HC7A | 60.0° | 60.0° |
| C5 | O5 | C7 | HC7B | 60.0° | 180.0° |
| C6 | C5 | O5 | C7 | 0.4° | 0.1° |
| O5 | C7 | HC7 | HC7A | 120.0° | 120.0° |
| O5 | C7 | HC7 | HC7B | 120.0° | 119.9° |
| O5 | C7 | HC7A | HC7B | 120.0° | 120.0° |
| O4' | C1' | C2' | H1' | 121.2° | 118.9° |
| O4' | C1' | C2' | C3' | 25.8° | 24.0° |
| O4' | C1' | C2' | H2' | 94.2° | 142.6° |
| O4' | C1' | C2' | H2'A | 145.8° | 94.6° |
| C1' | O4' | C4' | C3' | 29.8° | 40.5° |
| C1' | O4' | C4' | C5' | 153.5° | 159.3° |
| C1' | O4' | C4' | H4' | 90.1° | 78.3° |
| C1' | C2' | C3' | H2' | 120.0° | 118.6° |
| C1' | C2' | C3' | H2'A | 120.0° | 118.6° |
| C1' | C2' | H2' | H2'A | 123.1° | 122.7° |
| C1' | C2' | C3' | O3' | 157.3° | 118.7° |
| C1' | C2' | C3' | H3' | 84.3° | 118.8° |
| C1' | C2' | C3' | C4' | 41.5° | 0.0° |
| C2' | C1' | O4' | C4' | 2.2° | 40.5° |
| H1' | C1' | C2' | C3' | 147.0° | 94.9° |
| H1' | C1' | C2' | H2' | 27.0° | 23.7° |
| H1' | C1' | C2' | H2'A | 93.0° | 146.5° |
| H1' | C1' | O4' | C4' | 117.8° | 78.4° |
| HOP3 | OP3 | P | OP2 | 53.0° | 60.0° |
| HOP3 | OP3 | P | O5' | 175.5° | 180.0° |
| HOP3 | OP3 | P | OP1 | 0.0° | 60.0° |
| C3' | C2' | H2' | H2'A | 123.1° | 122.7° |
| C2' | C3' | O3' | H3' | 124.0° | 122.6° |
| C2' | C3' | O3' | C4' | 109.2° | 114.7° |
| C2' | C3' | H3' | C4' | 114.5° | 114.8° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | C5' | 164.5° | 142.8° |
| C2' | C3' | C4' | H4' | 79.2° | 94.9° |
| C2' | C3' | C4' | O4' | 44.1° | 24.0° |
| H2' | C2' | C3' | O3' | 37.3° | 0.1° |
| H2' | C2' | C3' | H3' | 155.7° | 122.6° |
| H2' | C2' | C3' | C4' | 78.5° | 118.6° |
| H2'A | C2' | C3' | O3' | 82.7° | 122.7° |
| H2'A | C2' | C3' | H3' | 35.6° | 0.2° |
| H2'A | C2' | C3' | C4' | 161.5° | 118.6° |
| OP2 | P | O5' | OP1 | 23.5° | 120.0° |
| OP2 | P | O5' | C5' | 172.9° | 65.0° |
| HOP2 | OP2 | P | O5' | 175.6° | 60.0° |
| HOP2 | OP2 | P | OP1 | 0.0° | 180.0° |
| O3' | C3' | H3' | C4' | 121.0° | 122.7° |
| O3' | C3' | C4' | C5' | 75.9° | 98.6° |
| O3' | C3' | C4' | H4' | 40.4° | 23.7° |
| O3' | C3' | C4' | O4' | 163.7° | 142.6° |
| H3' | C3' | O3' | HO3' | 56.0° | 61.2° |
| H3' | C3' | C4' | C5' | 41.9° | 24.0° |
| H3' | C3' | C4' | H4' | 158.3° | 146.3° |
| H3' | C3' | C4' | O4' | 78.4° | 94.8° |
| HO3' | O3' | C3' | C4' | 70.8° | 176.1° |
| C3' | C4' | C5' | H4' | 119.8° | 122.3° |
| C3' | C4' | C5' | O4' | 116.9° | 115.3° |
| C3' | C4' | H4' | O4' | 116.6° | 115.4° |
| C3' | C4' | C5' | H5' | 173.2° | 55.0° |
| C3' | C4' | C5' | H5'A | 66.8° | 64.9° |
| C3' | C4' | C5' | O5' | 53.2° | 175.0° |
| C5' | C4' | H4' | O4' | 120.0° | 122.3° |
| C4' | C5' | H5' | H5'A | 119.8° | 120.0° |
| C4' | C5' | H5' | O5' | 120.4° | 120.0° |
| C4' | C5' | H5'A | O5' | 120.3° | 120.1° |
| C4' | C5' | O5' | P | 177.3° | 180.0° |
| H4' | C4' | C5' | H5' | 66.9° | 67.3° |
| H4' | C4' | C5' | H5'A | 53.0° | 172.8° |
| H4' | C4' | C5' | O5' | 173.0° | 52.7° |
| O4' | C4' | C5' | H5' | 56.3° | 170.3° |
| O4' | C4' | C5' | H5'A | 176.3° | 50.4° |
| O4' | C4' | C5' | O5' | 63.7° | 69.7° |
| H5' | C5' | H5'A | O5' | 119.8° | 120.0° |
| H5' | C5' | O5' | P | 62.7° | 60.1° |
| H5'A | C5' | O5' | P | 57.3° | 59.9° |
| C5' | O5' | P | OP1 | 163.5° | 55.0° |
| HC7 | C7 | HC7A | HC7B | 120.0° | 120.0° |
