T4S
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 0.00Å | 1.61Å | |
OP3 | HOP3 | sing | 0.00Å | 0.95Å | |
P | OP1 | doub | 0.00Å | 1.50Å | |
P | OP2 | sing | 0.00Å | 1.45Å | |
P | O5' | sing | 0.00Å | 1.60Å | |
OP2 | HOP2 | sing | 0.00Å | 0.95Å | |
O5' | C5' | sing | 0.00Å | 1.42Å | |
N1 | C1' | sing | 0.00Å | 1.50Å | |
N1 | C6 | sing | 0.00Å | 1.37Å | |
N1 | C2 | sing | 0.00Å | 1.39Å | |
C6 | C5 | doub | 0.00Å | 1.37Å | |
C6 | H6 | sing | 0.00Å | 1.08Å | |
C2 | O2 | doub | 0.00Å | 1.22Å | |
C2 | N3 | sing | 0.00Å | 1.39Å | |
N3 | C4 | doub | 0.00Å | 1.39Å | |
C4 | C5 | sing | 0.00Å | 1.47Å | |
C4 | SE | sing | 0.00Å | 1.72Å | |
SE | HSE | sing | 0.00Å | 1.50Å | |
C5 | C5A | sing | 0.00Å | 1.50Å | |
C5A | H5A1 | sing | 0.00Å | 1.10Å | |
C5A | H5A2 | sing | 0.00Å | 1.10Å | |
C5A | H5A3 | sing | 0.00Å | 1.10Å | |
C2' | C3' | sing | 0.00Å | 1.52Å | |
C2' | C1' | sing | 0.00Å | 1.51Å | |
C2' | H2' | sing | 0.00Å | 1.10Å | |
C2' | H2'' | sing | 0.00Å | 1.10Å | |
C5' | C4' | sing | 0.00Å | 1.51Å | |
C5' | H5' | sing | 0.00Å | 1.10Å | |
C5' | H5'' | sing | 0.00Å | 1.10Å | |
C4' | C3' | sing | 0.00Å | 1.52Å | |
C4' | O4' | sing | 0.00Å | 1.45Å | |
C4' | H4' | sing | 0.00Å | 1.10Å | |
O4' | C1' | sing | 0.00Å | 1.44Å | |
C1' | H1' | sing | 0.00Å | 1.10Å | |
C3' | O3' | sing | 0.00Å | 1.41Å | |
C3' | H3' | sing | 0.00Å | 1.10Å | |
O3' | HO3' | sing | 0.00Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 109.5° | 90.0° |
OP3 | P | OP1 | 105.3° | 90.0° |
OP3 | P | OP2 | 112.1° | 90.0° |
OP3 | P | O5' | 103.3° | 90.0° |
OP1 | P | OP2 | 119.4° | 90.0° |
OP1 | P | O5' | 109.2° | 90.0° |
OP2 | P | O5' | 106.4° | 90.0° |
P | OP2 | HOP2 | 109.5° | 90.0° |
P | O5' | C5' | 120.2° | 90.0° |
O5' | C5' | C4' | 111.1° | 90.0° |
O5' | C5' | H5' | 108.9° | 90.0° |
O5' | C5' | H5'' | 108.6° | 90.0° |
C1' | N1 | C6 | 121.5° | 90.0° |
C1' | N1 | C2 | 116.9° | 90.0° |
N1 | C1' | C2' | 107.3° | 90.0° |
N1 | C1' | O4' | 100.6° | 90.0° |
N1 | C1' | H1' | 115.7° | 90.0° |
C6 | N1 | C2 | 121.6° | 90.0° |
N1 | C6 | C5 | 123.5° | 90.0° |
N1 | C6 | H6 | 118.3° | 90.0° |
N1 | C2 | O2 | 122.7° | 90.0° |
N1 | C2 | N3 | 115.2° | 90.0° |
C5 | C6 | H6 | 118.3° | 90.0° |
C6 | C5 | C4 | 117.7° | 90.0° |
C6 | C5 | C5A | 123.2° | 90.0° |
O2 | C2 | N3 | 122.1° | 90.0° |
C2 | N3 | C4 | 126.9° | 90.0° |
N3 | C4 | C5 | 115.1° | 90.0° |
N3 | C4 | SE | 125.4° | 90.0° |
C5 | C4 | SE | 119.5° | 90.0° |
C4 | C5 | C5A | 119.0° | 90.0° |
C4 | SE | HSE | 109.5° | 90.0° |
C5 | C5A | H5A1 | 109.5° | 90.0° |
C5 | C5A | H5A2 | 109.5° | 90.0° |
C5 | C5A | H5A3 | 109.5° | 90.0° |
H5A1 | C5A | H5A2 | 109.4° | 90.0° |
H5A1 | C5A | H5A3 | 109.5° | 90.0° |
H5A2 | C5A | H5A3 | 109.5° | 90.0° |
C3' | C2' | C1' | 105.0° | 90.0° |
C3' | C2' | H2' | 111.0° | 90.0° |
C3' | C2' | H2'' | 112.0° | 90.0° |
C2' | C3' | C4' | 104.0° | 90.0° |
C2' | C3' | O3' | 109.1° | 90.0° |
C2' | C3' | H3' | 114.5° | 90.0° |
C1' | C2' | H2' | 111.0° | 90.0° |
C1' | C2' | H2'' | 112.0° | 90.0° |
C2' | C1' | O4' | 107.5° | 90.0° |
C2' | C1' | H1' | 109.6° | 90.0° |
H2' | C2' | H2'' | 106.1° | 90.0° |
C4' | C5' | H5' | 108.9° | 90.0° |
C4' | C5' | H5'' | 108.5° | 90.0° |
C5' | C4' | C3' | 114.0° | 90.0° |
C5' | C4' | O4' | 109.1° | 90.0° |
C5' | C4' | H4' | 105.2° | 90.0° |
H5' | C5' | H5'' | 110.8° | 90.0° |
C3' | C4' | O4' | 104.7° | 90.0° |
C3' | C4' | H4' | 109.5° | 90.0° |
C4' | C3' | O3' | 112.7° | 90.0° |
C4' | C3' | H3' | 110.8° | 90.0° |
O4' | C4' | H4' | 114.5° | 90.0° |
C4' | O4' | C1' | 109.9° | 90.0° |
O4' | C1' | H1' | 115.5° | 90.0° |
O3' | C3' | H3' | 105.9° | 90.0° |
C3' | O3' | HO3' | 109.5° | 90.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 127.0° | 90.0° |
OP3 | P | OP1 | O5' | 110.4° | 90.0° |
OP3 | P | OP2 | O5' | 112.2° | 90.0° |
OP3 | P | OP2 | HOP2 | 124.4° | 90.0° |
OP3 | P | O5' | C5' | 53.9° | 90.0° |
HOP3 | OP3 | P | OP1 | 159.7° | 90.0° |
HOP3 | OP3 | P | OP2 | 69.0° | 90.0° |
HOP3 | OP3 | P | O5' | 45.2° | 90.0° |
OP1 | P | OP2 | O5' | 124.0° | 90.0° |
OP1 | P | OP2 | HOP2 | 0.6° | 90.0° |
OP1 | P | O5' | C5' | 57.8° | 90.0° |
OP2 | P | O5' | C5' | 172.0° | 90.0° |
O5' | P | OP2 | HOP2 | 123.4° | 90.0° |
P | O5' | C5' | C4' | 177.2° | 90.0° |
P | O5' | C5' | H5' | 57.2° | 90.0° |
P | O5' | C5' | H5'' | 63.5° | 90.0° |
O5' | C5' | C4' | H5' | 120.0° | 90.0° |
O5' | C5' | C4' | H5'' | 119.3° | 90.0° |
O5' | C5' | H5' | H5'' | 119.3° | 90.0° |
O5' | C5' | C4' | C3' | 41.6° | 90.0° |
O5' | C5' | C4' | O4' | 75.1° | 90.0° |
O5' | C5' | C4' | H4' | 161.6° | 90.0° |
C1' | N1 | C6 | C2 | 178.4° | 90.0° |
C1' | N1 | C6 | C5 | 177.4° | 90.0° |
C1' | N1 | C6 | H6 | 2.6° | 90.0° |
C1' | N1 | C2 | O2 | 0.3° | 90.0° |
C1' | N1 | C2 | N3 | 179.0° | 90.0° |
N1 | C1' | C2' | C3' | 96.3° | 90.0° |
N1 | C1' | C2' | O4' | 107.5° | 90.0° |
N1 | C1' | C2' | H1' | 126.3° | 90.0° |
N1 | C1' | C2' | H2' | 23.7° | 90.0° |
N1 | C1' | C2' | H2'' | 142.1° | 90.0° |
N1 | C1' | O4' | C4' | 120.2° | 90.0° |
N1 | C1' | O4' | H1' | 125.2° | 90.0° |
N1 | C6 | C5 | H6 | 180.0° | 90.0° |
C6 | N1 | C2 | O2 | 178.1° | 90.0° |
C6 | N1 | C2 | N3 | 0.5° | 90.0° |
N1 | C6 | C5 | C4 | 1.5° | 90.0° |
N1 | C6 | C5 | C5A | 178.5° | 90.0° |
C6 | N1 | C1' | C2' | 87.3° | 90.0° |
C6 | N1 | C1' | O4' | 25.0° | 90.0° |
C6 | N1 | C1' | H1' | 150.1° | 90.0° |
C2 | N1 | C6 | C5 | 1.0° | 90.0° |
C2 | N1 | C6 | H6 | 179.0° | 90.0° |
N1 | C2 | O2 | N3 | 178.6° | 90.0° |
N1 | C2 | N3 | C4 | 1.7° | 90.0° |
C2 | N1 | C1' | C2' | 91.1° | 90.0° |
C2 | N1 | C1' | O4' | 156.6° | 90.0° |
C2 | N1 | C1' | H1' | 31.5° | 90.0° |
C6 | C5 | C4 | N3 | 0.4° | 90.0° |
C6 | C5 | C4 | C5A | 180.0° | 90.0° |
C6 | C5 | C4 | SE | 179.9° | 90.0° |
C6 | C5 | C5A | H5A1 | 124.2° | 90.0° |
C6 | C5 | C5A | H5A2 | 4.2° | 90.0° |
C6 | C5 | C5A | H5A3 | 115.8° | 90.0° |
H6 | C6 | C5 | C4 | 178.5° | 90.0° |
H6 | C6 | C5 | C5A | 1.4° | 90.0° |
O2 | C2 | N3 | C4 | 177.0° | 90.0° |
C2 | N3 | C4 | C5 | 1.2° | 90.0° |
C2 | N3 | C4 | SE | 178.5° | 90.0° |
N3 | C4 | C5 | SE | 179.7° | 90.0° |
N3 | C4 | SE | HSE | 130.5° | 90.0° |
N3 | C4 | C5 | C5A | 179.6° | 90.0° |
C5 | C4 | SE | HSE | 49.2° | 90.0° |
C4 | C5 | C5A | H5A1 | 55.8° | 90.0° |
C4 | C5 | C5A | H5A2 | 175.8° | 90.0° |
C4 | C5 | C5A | H5A3 | 64.2° | 90.0° |
SE | C4 | C5 | C5A | 0.1° | 90.0° |
C5 | C5A | H5A1 | H5A2 | 120.0° | 90.0° |
C5 | C5A | H5A1 | H5A3 | 120.0° | 90.0° |
C5 | C5A | H5A2 | H5A3 | 120.0° | 90.0° |
H5A1 | C5A | H5A2 | H5A3 | 120.0° | 90.0° |
C3' | C2' | C1' | H2' | 120.0° | 90.0° |
C3' | C2' | C1' | H2'' | 121.7° | 90.0° |
C3' | C2' | H2' | H2'' | 121.8° | 90.0° |
C2' | C3' | C4' | C5' | 149.1° | 90.0° |
C2' | C3' | C4' | O3' | 118.0° | 90.0° |
C2' | C3' | C4' | H3' | 123.5° | 90.0° |
C2' | C3' | C4' | O4' | 30.0° | 90.0° |
C2' | C3' | C4' | H4' | 93.3° | 90.0° |
C3' | C2' | C1' | O4' | 11.2° | 90.0° |
C3' | C2' | C1' | H1' | 137.4° | 90.0° |
C2' | C3' | O3' | H3' | 123.7° | 90.0° |
C2' | C3' | O3' | HO3' | 163.1° | 90.0° |
C1' | C2' | H2' | H2'' | 121.8° | 90.0° |
C1' | C2' | C3' | C4' | 25.1° | 90.0° |
C2' | C1' | O4' | C4' | 8.1° | 90.0° |
C2' | C1' | O4' | H1' | 122.7° | 90.0° |
C1' | C2' | C3' | O3' | 145.6° | 90.0° |
C1' | C2' | C3' | H3' | 96.0° | 90.0° |
H2' | C2' | C3' | C4' | 145.1° | 90.0° |
H2' | C2' | C1' | O4' | 131.2° | 90.0° |
H2' | C2' | C1' | H1' | 102.6° | 90.0° |
H2' | C2' | C3' | O3' | 94.4° | 90.0° |
H2' | C2' | C3' | H3' | 24.0° | 90.0° |
H2'' | C2' | C3' | C4' | 96.6° | 90.0° |
H2'' | C2' | C1' | O4' | 110.5° | 90.0° |
H2'' | C2' | C1' | H1' | 15.8° | 90.0° |
H2'' | C2' | C3' | O3' | 23.9° | 90.0° |
H2'' | C2' | C3' | H3' | 142.3° | 90.0° |
C4' | C5' | H5' | H5'' | 119.3° | 90.0° |
C5' | C4' | C3' | O4' | 119.2° | 90.0° |
C5' | C4' | C3' | H4' | 117.6° | 90.0° |
C5' | C4' | O4' | H4' | 117.6° | 90.0° |
C5' | C4' | O4' | C1' | 146.5° | 90.0° |
C5' | C4' | C3' | O3' | 92.9° | 90.0° |
C5' | C4' | C3' | H3' | 25.7° | 90.0° |
H5' | C5' | C4' | C3' | 78.4° | 90.0° |
H5' | C5' | C4' | O4' | 164.9° | 90.0° |
H5' | C5' | C4' | H4' | 41.6° | 90.0° |
H5'' | C5' | C4' | C3' | 160.9° | 90.0° |
H5'' | C5' | C4' | O4' | 44.2° | 90.0° |
H5'' | C5' | C4' | H4' | 79.0° | 90.0° |
C3' | C4' | O4' | H4' | 120.0° | 90.0° |
C3' | C4' | O4' | C1' | 24.0° | 90.0° |
C4' | C3' | O3' | H3' | 121.4° | 90.0° |
C4' | C3' | O3' | HO3' | 48.1° | 90.0° |
C4' | O4' | C1' | H1' | 114.6° | 90.0° |
O4' | C4' | C3' | O3' | 147.9° | 90.0° |
O4' | C4' | C3' | H3' | 93.5° | 90.0° |
H4' | C4' | O4' | C1' | 95.9° | 90.0° |
H4' | C4' | C3' | O3' | 24.7° | 90.0° |
H4' | C4' | C3' | H3' | 143.3° | 90.0° |
H3' | C3' | O3' | HO3' | 73.3° | 90.0° |