T48

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3P	P	sing	1.61Å	1.49Å
O3P	H3P	sing	0.97Å	0.95Å
P	O1P	doub	1.48Å	1.47Å
P	O2P	sing	1.61Å	1.55Å
P	O5'	sing	1.61Å	1.57Å
O2P	H2P	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.42Å
C5'	C4'	sing	1.53Å	1.53Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	C3'	sing	1.54Å	1.54Å
C4'	C	sing	1.54Å	1.52Å
C4'	H4'	sing	1.09Å	1.11Å
C3'	O3'	sing	1.43Å	1.38Å
C3'	C2'	sing	1.54Å	1.49Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HA	sing	0.97Å	0.95Å
C2'	C1'	sing	1.55Å	1.48Å
C2'	H2'1	sing	1.09Å	1.11Å
C2'	H2'2	sing	1.09Å	1.12Å
C1'	N1	sing	1.46Å	1.45Å
C1'	C	sing	1.55Å	1.51Å
C1'	H1'	sing	1.09Å	1.11Å
N1	C2	sing	1.34Å	1.40Å
N1	C6	sing	1.37Å	1.37Å
C2	O2	doub	1.22Å	1.24Å
C2	N3	sing	1.35Å	1.38Å
N3	C4	sing	1.35Å	1.36Å
N3	H3	sing	0.97Å	1.02Å
C4	O4	doub	1.22Å	1.23Å
C4	C5	sing	1.41Å	1.45Å
C5	C5M	sing	1.51Å	1.52Å
C5	C6	doub	1.35Å	1.33Å
C5M	H5M1	sing	1.09Å	1.11Å
C5M	H5M2	sing	1.09Å	1.11Å
C5M	H5M3	sing	1.09Å	1.12Å
C	O	sing	1.43Å	1.45Å
C	H	sing	1.09Å	1.11Å
C6	H6	sing	1.08Å	1.10Å
O	HB	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O3P	H3P	122.2°	106.8°
O3P	P	O1P	122.2°	109.5°
O3P	P	O2P	107.8°	109.5°
O3P	P	O5'	107.3°	109.5°
O1P	P	O2P	111.0°	109.5°
O1P	P	O5'	107.9°	109.4°
O2P	P	O5'	97.9°	109.5°
P	O2P	H2P	107.8°	106.8°
P	O5'	C5'	121.7°	106.9°
O5'	C5'	C4'	109.3°	109.6°
O5'	C5'	H5'1	112.3°	109.5°
O5'	C5'	H5'2	112.3°	109.5°
C4'	C5'	H5'1	112.3°	109.5°
C4'	C5'	H5'2	112.3°	109.5°
C5'	C4'	C3'	111.4°	110.0°
C5'	C4'	C	108.0°	110.2°
C5'	C4'	H4'	111.0°	110.0°
H5'1	C5'	H5'2	98.1°	109.4°
C3'	C4'	C	104.3°	106.7°
C3'	C4'	H4'	111.0°	110.0°
C4'	C3'	O3'	108.2°	110.1°
C4'	C3'	C2'	105.4°	106.6°
C4'	C3'	H3'	113.4°	110.0°
C	C4'	H4'	111.0°	109.9°
C4'	C	C1'	103.3°	104.1°
C4'	C	O	113.9°	110.5°
C4'	C	H	107.3°	110.5°
O3'	C3'	C2'	102.3°	110.0°
O3'	C3'	H3'	113.3°	110.0°
C3'	O3'	HA	108.2°	106.8°
C2'	C3'	H3'	113.3°	110.0°
C3'	C2'	C1'	100.9°	104.2°
C3'	C2'	H2'1	115.5°	110.5°
C3'	C2'	H2'2	115.5°	110.5°
C1'	C2'	H2'1	115.5°	110.5°
C1'	C2'	H2'2	115.5°	110.4°
C2'	C1'	N1	112.6°	110.9°
C2'	C1'	C	103.0°	102.9°
C2'	C1'	H1'	109.6°	110.8°
H2'1	C2'	H2'2	95.0°	110.5°
N1	C1'	C	112.3°	110.7°
N1	C1'	H1'	109.6°	110.6°
C1'	N1	C2	114.5°	119.7°
C1'	N1	C6	123.1°	119.8°
C	C1'	H1'	109.6°	110.7°
C1'	C	O	117.1°	110.9°
C1'	C	H	107.3°	110.2°
C2	N1	C6	122.4°	120.5°
N1	C2	O2	123.0°	119.5°
N1	C2	N3	115.7°	121.0°
N1	C6	C5	119.9°	119.7°
N1	C6	H6	120.1°	120.1°
O2	C2	N3	121.3°	119.5°
C2	N3	C4	125.2°	120.3°
C2	N3	H3	117.4°	119.9°
C4	N3	H3	117.4°	119.8°
N3	C4	O4	118.0°	120.3°
N3	C4	C5	115.0°	119.3°
O4	C4	C5	127.0°	120.3°
C4	C5	C5M	118.9°	120.4°
C4	C5	C6	121.9°	119.1°
C5M	C5	C6	119.3°	120.4°
C5	C5M	H5M1	119.3°	109.5°
C5	C5M	H5M2	108.7°	109.5°
C5	C5M	H5M3	108.7°	109.4°
C5	C6	H6	120.1°	120.2°
H5M1	C5M	H5M2	108.7°	109.5°
H5M1	C5M	H5M3	108.7°	109.4°
H5M2	C5M	H5M3	101.3°	109.5°
O	C	H	107.4°	110.5°
C	O	HB	113.9°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3P	P	O1P	O2P	128.9°	120.0°
O3P	P	O1P	O5'	124.9°	120.0°
O3P	P	O2P	O5'	111.1°	120.0°
O3P	P	O2P	H2P	180.0°	60.0°
O3P	P	O5'	C5'	169.0°	180.0°
H3P	O3P	P	O1P	180.0°	60.0°
H3P	O3P	P	O2P	49.8°	60.0°
H3P	O3P	P	O5'	54.8°	180.0°
O1P	P	O2P	O5'	112.7°	119.9°
O1P	P	O2P	H2P	43.7°	180.0°
O1P	P	O5'	C5'	35.6°	60.0°
O2P	P	O5'	C5'	79.5°	60.0°
O5'	P	O2P	H2P	68.9°	60.0°
P	O5'	C5'	C4'	171.4°	180.0°
P	O5'	C5'	H5'1	46.1°	60.0°
P	O5'	C5'	H5'2	63.4°	59.9°
O5'	C5'	C4'	H5'1	125.3°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.1°
O5'	C5'	H5'1	H5'2	118.2°	119.9°
O5'	C5'	C4'	C3'	56.2°	61.4°
O5'	C5'	C4'	C	57.8°	178.8°
O5'	C5'	C4'	H4'	179.6°	59.9°
C4'	C5'	H5'1	H5'2	118.2°	120.0°
C5'	C4'	C3'	C	116.2°	119.5°
C5'	C4'	C3'	H4'	124.2°	121.3°
C5'	C4'	C	H4'	121.8°	121.3°
C5'	C4'	C3'	O3'	146.7°	121.3°
C5'	C4'	C3'	C2'	104.5°	119.4°
C5'	C4'	C3'	H3'	20.0°	0.1°
C5'	C4'	C	C1'	136.0°	142.8°
C5'	C4'	C	O	95.9°	98.2°
C5'	C4'	C	H	22.8°	24.4°
H5'1	C5'	C4'	C3'	178.6°	58.6°
H5'1	C5'	C4'	C	67.5°	58.8°
H5'1	C5'	C4'	H4'	54.3°	180.0°
H5'2	C5'	C4'	C3'	69.1°	178.5°
H5'2	C5'	C4'	C	177.0°	61.1°
H5'2	C5'	C4'	H4'	55.1°	60.1°
C3'	C4'	C	H4'	119.6°	119.2°
C4'	C3'	O3'	C2'	111.0°	117.2°
C4'	C3'	O3'	H3'	126.6°	121.4°
C4'	C3'	C2'	H3'	124.6°	119.3°
C4'	C3'	O3'	HA	180.0°	178.6°
C4'	C3'	C2'	C1'	36.8°	23.6°
C4'	C3'	C2'	H2'1	162.0°	142.3°
C4'	C3'	C2'	H2'2	88.5°	95.0°
C3'	C4'	C	C1'	17.4°	23.3°
C3'	C4'	C	O	145.5°	142.4°
C3'	C4'	C	H	95.8°	95.0°
C	C4'	C3'	O3'	97.1°	119.2°
C	C4'	C3'	C2'	11.7°	0.1°
C	C4'	C3'	H3'	136.3°	119.4°
C4'	C	C1'	C2'	41.1°	37.7°
C4'	C	C1'	N1	162.5°	156.2°
C4'	C	C1'	O	126.1°	118.8°
C4'	C	C1'	H	113.2°	118.5°
C4'	C	C1'	H1'	75.5°	80.7°
C4'	C	O	H	118.7°	122.6°
C4'	C	O	HB	180.0°	179.9°
H4'	C4'	C3'	O3'	22.5°	0.0°
H4'	C4'	C3'	C2'	131.3°	119.3°
H4'	C4'	C3'	H3'	104.2°	121.4°
H4'	C4'	C	C1'	102.2°	95.9°
H4'	C4'	C	O	25.9°	23.2°
H4'	C4'	C	H	144.6°	145.8°
O3'	C3'	C2'	H3'	122.4°	121.3°
O3'	C3'	C2'	C1'	76.3°	95.8°
O3'	C3'	C2'	H2'1	48.9°	22.9°
O3'	C3'	C2'	H2'2	158.4°	145.6°
C2'	C3'	O3'	HA	69.0°	61.4°
C3'	C2'	C1'	H2'1	125.3°	118.7°
C3'	C2'	C1'	H2'2	125.3°	118.7°
C3'	C2'	H2'1	H2'2	121.3°	122.7°
C3'	C2'	C1'	N1	169.4°	156.2°
C3'	C2'	C1'	C	48.3°	37.8°
C3'	C2'	C1'	H1'	68.3°	80.6°
H3'	C3'	O3'	HA	53.4°	60.0°
H3'	C3'	C2'	C1'	161.3°	142.9°
H3'	C3'	C2'	H2'1	73.4°	98.4°
H3'	C3'	C2'	H2'2	36.1°	24.3°
C1'	C2'	H2'1	H2'2	121.3°	122.5°
C2'	C1'	N1	C	115.7°	113.5°
C2'	C1'	N1	H1'	122.3°	123.3°
C2'	C1'	C	H1'	116.6°	118.4°
C2'	C1'	N1	C2	137.1°	55.9°
C2'	C1'	N1	C6	43.1°	123.9°
C2'	C1'	C	O	167.2°	156.5°
C2'	C1'	C	H	72.1°	80.9°
H2'1	C2'	C1'	N1	65.3°	85.0°
H2'1	C2'	C1'	C	173.6°	156.6°
H2'1	C2'	C1'	H1'	57.0°	38.2°
H2'2	C2'	C1'	N1	44.2°	37.5°
H2'2	C2'	C1'	C	77.0°	80.9°
H2'2	C2'	C1'	H1'	166.4°	160.7°
N1	C1'	C	H1'	122.1°	123.1°
C1'	N1	C2	C6	179.8°	179.8°
C1'	N1	C2	O2	1.8°	0.1°
C1'	N1	C2	N3	179.8°	179.9°
C1'	N1	C6	C5	179.7°	179.9°
N1	C1'	C	O	71.5°	85.0°
N1	C1'	C	H	49.2°	37.6°
C1'	N1	C6	H6	0.3°	0.2°
C	C1'	N1	C2	107.2°	57.6°
C	C1'	N1	C6	72.6°	122.6°
C1'	C	O	H	120.7°	122.5°
C1'	C	O	HB	59.4°	65.1°
H1'	C1'	N1	C2	14.8°	179.2°
H1'	C1'	N1	C6	165.4°	0.6°
H1'	C1'	C	O	50.6°	38.1°
H1'	C1'	C	H	171.3°	160.7°
N1	C2	O2	N3	178.3°	180.0°
N1	C2	N3	C4	0.2°	0.2°
N1	C2	N3	H3	179.8°	179.9°
C2	N1	C6	C5	0.0°	0.1°
C2	N1	C6	H6	180.0°	180.0°
C6	N1	C2	O2	178.4°	179.9°
C6	N1	C2	N3	0.0°	0.1°
N1	C6	C5	C4	0.0°	0.3°
N1	C6	C5	C5M	178.7°	180.0°
N1	C6	C5	H6	180.0°	179.9°
O2	C2	N3	C4	178.6°	179.8°
O2	C2	N3	H3	1.4°	0.0°
C2	N3	C4	H3	180.0°	179.8°
C2	N3	C4	O4	178.8°	180.0°
C2	N3	C4	C5	0.3°	0.4°
N3	C4	O4	C5	178.9°	179.6°
N3	C4	C5	C5M	178.9°	179.9°
N3	C4	C5	C6	0.2°	0.4°
H3	N3	C4	O4	1.2°	0.2°
H3	N3	C4	C5	179.7°	179.8°
O4	C4	C5	C5M	0.1°	0.2°
O4	C4	C5	C6	178.8°	179.9°
C4	C5	C5M	C6	178.7°	179.7°
C4	C5	C5M	H5M1	1.3°	0.3°
C4	C5	C5M	H5M2	126.5°	119.8°
C4	C5	C5M	H5M3	124.0°	120.3°
C4	C5	C6	H6	180.0°	179.8°
C5	C5M	H5M1	H5M2	125.2°	120.1°
C5	C5M	H5M1	H5M3	125.3°	120.0°
C5	C5M	H5M2	H5M3	114.4°	120.0°
C5M	C5	C6	H6	1.3°	0.1°
C6	C5	C5M	H5M1	180.0°	180.0°
C6	C5	C5M	H5M2	54.8°	60.0°
C6	C5	C5M	H5M3	54.7°	60.0°
H5M1	C5M	H5M2	H5M3	114.4°	120.0°
H	C	O	HB	61.3°	57.4°

Definition date:	1996-12-07
Last modified:	2011-06-04
Release status:	REL
Processing site:	PDBJ
Derived from:	291D