Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

T33

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.38Å1.41ÅAromatic
C1C6sing1.38Å1.40ÅAromatic
C1C7sing1.51Å1.46Å
C2C3sing1.38Å1.37ÅAromatic
C2H2sing1.08Å1.10Å
C3I3sing2.09Å2.07Å
C3C4doub1.39Å1.43ÅAromatic
C4O4sing1.36Å1.39Å
C4C5sing1.39Å1.40ÅAromatic
O4C1'sing1.36Å1.45Å
C5C6doub1.38Å1.37ÅAromatic
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
C7C8sing1.53Å1.51Å
C7H71sing1.09Å1.12Å
C7H72sing1.09Å1.12Å
C8N8sing1.47Å1.46Å
C8C9sing1.51Å1.53Å
C8H8sing1.09Å1.12Å
N8HN81sing1.01Å1.02Å
N8HN82sing1.01Å1.02Å
C9O9doub1.21Å1.23Å
C9O10sing1.34Å1.26Å
O10HO1sing0.97Å0.95Å
C1'C2'doub1.39Å1.37ÅAromatic
C1'C6'sing1.39Å1.49ÅAromatic
C2'C3'sing1.38Å1.38ÅAromatic
C2'H2'sing1.08Å1.10Å
C3'I3'sing2.09Å2.20Å
C3'C4'doub1.39Å1.43ÅAromatic
C4'O4'sing1.36Å1.38Å
C4'C5'sing1.39Å1.44ÅAromatic
O4'HO'4sing0.97Å0.95Å
C5'C6'doub1.38Å1.35ÅAromatic
C5'H5'sing1.08Å1.10Å
C6'H6'sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6113.0°120.1°
C2C1C7115.9°119.9°
C1C2C3124.6°120.1°
C1C2H2119.4°120.0°
C6C1C7131.0°120.0°
C1C6C5124.1°120.1°
C1C6H6119.1°119.9°
C1C7C8130.6°109.5°
C1C7H71104.9°109.5°
C1C7H72104.9°109.4°
C3C2H2116.0°119.9°
C2C3I3115.2°120.1°
C2C3C4121.2°119.9°
I3C3C4123.6°120.0°
C3C4O4114.7°120.1°
C3C4C5114.8°119.9°
O4C4C5130.5°120.1°
C4O4C1'127.0°106.8°
C4C5C6122.4°119.9°
C4C5H5119.7°120.1°
O4C1'C2'106.5°120.0°
O4C1'C6'124.7°120.0°
C6C5H5117.9°120.0°
C5C6H6116.9°119.9°
C8C7H71104.9°109.5°
C8C7H72104.8°109.5°
C7C8N8114.4°109.5°
C7C8C9106.6°109.5°
C7C8H8110.9°109.5°
H71C7H72104.2°109.4°
N8C8C9116.5°109.5°
N8C8H899.7°109.5°
C8N8HN81114.3°106.8°
C8N8HN82110.4°106.7°
C9C8H8108.5°109.5°
C8C9O9125.9°120.0°
C8C9O10118.1°120.0°
HN81N8HN82110.4°106.6°
O9C9O10116.0°120.0°
C9O10HO1118.0°120.0°
C2'C1'C6'128.8°120.0°
C1'C2'C3'125.3°120.0°
C1'C2'H2'117.0°120.0°
C1'C6'C5'104.7°120.0°
C1'C6'H6'131.2°120.0°
C3'C2'H2'117.8°120.0°
C2'C3'I3'126.9°120.0°
C2'C3'C4'107.9°120.0°
I3'C3'C4'125.2°120.0°
C3'C4'O4'115.4°120.0°
C3'C4'C5'126.1°120.0°
O4'C4'C5'118.5°120.0°
C4'O4'HO'4115.4°106.9°
C4'C5'C6'127.3°120.0°
C4'C5'H5'119.8°120.0°
C6'C5'H5'112.9°120.0°
C5'C6'H6'124.1°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6C7176.1°179.8°
C1C2C3H2180.0°179.5°
C1C2C3I3178.6°179.8°
C1C2C3C41.2°0.5°
C2C1C6C50.3°0.2°
C2C1C6H6179.7°179.7°
C2C1C7C8115.8°90.2°
C2C1C7H71119.0°149.7°
C2C1C7H729.5°29.8°
C6C1C2C30.3°0.5°
C6C1C2H2179.7°180.0°
C1C6C5C41.4°0.1°
C1C6C5H6180.0°180.0°
C1C6C5H5178.6°180.0°
C6C1C7C868.2°90.0°
C6C1C7H7157.1°30.1°
C6C1C7H72166.6°150.0°
C7C1C2C3177.0°179.7°
C7C1C2H23.0°0.2°
C7C1C6C5176.4°180.0°
C7C1C6H63.6°0.1°
C1C7C8H71125.3°120.1°
C1C7C8H72125.3°120.0°
C1C7H71H72110.0°120.0°
C1C7C8N820.6°60.0°
C1C7C8C9150.9°180.0°
C1C7C8H891.2°60.0°
C2C3I3C4177.3°179.7°
C2C3C4O4179.5°179.7°
C2C3C4C52.1°0.2°
H2C2C3I31.4°0.3°
H2C2C3C4178.8°180.0°
I3C3C4O42.3°0.0°
I3C3C4C5179.3°179.9°
C3C4O4C5178.1°179.9°
C3C4O4C1'93.8°174.4°
C3C4C5C62.2°0.1°
C3C4C5H5177.8°180.0°
O4C4C5C6179.7°180.0°
O4C4C5H50.3°0.1°
C4O4C1'C2'19.2°85.4°
C4O4C1'C6'162.5°94.9°
C5C4O4C1'88.0°5.7°
C4C5C6H5180.0°179.9°
C4C5C6H6178.6°180.0°
O4C1'C2'C6'178.3°179.7°
O4C1'C2'C3'178.7°179.7°
O4C1'C2'H2'1.3°0.3°
O4C1'C6'C5'179.4°180.0°
O4C1'C6'H6'0.6°0.1°
H5C5C6H61.4°0.1°
C8C7H71H72109.9°120.0°
C7C8N8C9125.2°120.0°
C7C8N8H8118.4°120.0°
C7C8C9H8119.5°120.0°
C7C8N8HN81180.0°60.0°
C7C8N8HN8254.8°53.7°
C7C8C9O9119.1°90.1°
C7C8C9O1059.9°90.0°
H71C7C8N8145.9°60.0°
H71C7C8C983.8°59.9°
H71C7C8H834.1°179.9°
H72C7C8N8104.7°180.0°
H72C7C8C925.6°60.0°
H72C7C8H8143.5°60.0°
N8C8C9H8111.4°120.0°
C8N8HN81HN82125.2°113.8°
N8C8C9O910.0°29.9°
N8C8C9O10171.0°150.0°
C9C8N8HN8154.8°60.0°
C9C8N8HN82180.0°173.7°
C8C9O9O10179.0°179.9°
C8C9O10HO1180.0°180.0°
H8C8N8HN8161.6°180.0°
H8C8N8HN8263.6°66.3°
H8C8C9O9121.4°149.9°
H8C8C9O1059.6°30.0°
O9C9O10HO11.0°0.1°
C1'C2'C3'H2'180.0°179.4°
C1'C2'C3'I3'178.7°179.8°
C1'C2'C3'C4'1.3°0.6°
C2'C1'C6'C5'1.4°0.3°
C2'C1'C6'H6'178.6°179.8°
C6'C1'C2'C3'0.5°0.6°
C6'C1'C2'H2'179.6°180.0°
C1'C6'C5'C4'0.5°0.0°
C1'C6'C5'H6'180.0°179.9°
C1'C6'C5'H5'179.5°180.0°
C2'C3'I3'C4'177.0°179.7°
C2'C3'C4'O4'179.8°179.7°
C2'C3'C4'C5'2.2°0.3°
H2'C2'C3'I3'1.2°0.4°
H2'C2'C3'C4'178.7°180.0°
I3'C3'C4'O4'2.3°0.0°
I3'C3'C4'C5'179.6°180.0°
C3'C4'O4'C5'178.2°179.9°
C3'C4'O4'HO'4179.9°89.9°
C3'C4'C5'C6'1.3°0.0°
C3'C4'C5'H5'178.7°180.0°
O4'C4'C5'C6'179.3°179.9°
O4'C4'C5'H5'0.7°0.0°
C5'C4'O4'HO'41.8°90.0°
C4'C5'C6'H5'180.0°180.0°
C4'C5'C6'H6'179.5°180.0°
H5'C5'C6'H6'0.5°0.1°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon