T32
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | O1P | doub | 1.48Å | 1.49Å | |
P | O2P | sing | 1.61Å | 1.49Å | |
P | O3P | sing | 1.61Å | 1.58Å | |
P | O5' | sing | 1.61Å | 1.56Å | |
O2P | H2P | sing | 0.97Å | 0.95Å | |
O3P | H3P | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.44Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | C3' | sing | 1.55Å | 1.52Å | |
C4' | C' | sing | 1.54Å | 1.50Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
C3' | O3' | sing | 1.43Å | 1.40Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HA | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.54Å | 1.44Å | |
C2' | H2'1 | sing | 1.09Å | 1.11Å | |
C2' | H2'2 | sing | 1.09Å | 1.11Å | |
C1' | N1 | sing | 1.47Å | 1.46Å | |
C1' | C' | sing | 1.54Å | 1.50Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C2 | sing | 1.35Å | 1.37Å | |
N1 | C6 | sing | 1.37Å | 1.34Å | |
C2 | O2 | doub | 1.22Å | 1.22Å | |
C2 | N3 | sing | 1.35Å | 1.36Å | |
N3 | C4 | sing | 1.35Å | 1.36Å | |
N3 | H3 | sing | 0.97Å | 1.02Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | C5 | sing | 1.42Å | 1.42Å | |
C5 | C5M | sing | 1.51Å | 1.52Å | |
C5 | C6 | doub | 1.35Å | 1.34Å | |
C5M | H5M1 | sing | 1.09Å | 1.12Å | |
C5M | H5M2 | sing | 1.09Å | 1.12Å | |
C5M | H5M3 | sing | 1.09Å | 1.12Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C' | CM' | sing | 1.53Å | 1.52Å | |
C' | H' | sing | 1.09Å | 1.11Å | |
CM' | HM'1 | sing | 1.09Å | 1.12Å | |
CM' | HM'2 | sing | 1.09Å | 1.11Å | |
CM' | HM'3 | sing | 1.09Å | 1.12Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1P | P | O2P | 123.7° | 109.5° |
O1P | P | O3P | 109.1° | 109.5° |
O1P | P | O5' | 107.9° | 109.4° |
O2P | P | O3P | 105.7° | 109.5° |
O2P | P | O5' | 107.9° | 109.5° |
P | O2P | H2P | 123.7° | 106.9° |
O3P | P | O5' | 100.0° | 109.4° |
P | O3P | H3P | 109.1° | 106.9° |
P | O5' | C5' | 122.7° | 106.8° |
O5' | C5' | C4' | 110.1° | 109.5° |
O5' | C5' | H5'1 | 112.0° | 109.5° |
O5' | C5' | H5'2 | 112.0° | 109.4° |
C4' | C5' | H5'1 | 112.0° | 109.4° |
C4' | C5' | H5'2 | 112.0° | 109.4° |
C5' | C4' | C3' | 109.5° | 110.6° |
C5' | C4' | C' | 112.4° | 110.5° |
C5' | C4' | H4' | 109.5° | 110.5° |
H5'1 | C5' | H5'2 | 98.4° | 109.5° |
C3' | C4' | C' | 106.3° | 104.2° |
C3' | C4' | H4' | 109.5° | 110.5° |
C4' | C3' | O3' | 109.3° | 110.7° |
C4' | C3' | C2' | 101.8° | 102.8° |
C4' | C3' | H3' | 111.9° | 110.8° |
C' | C4' | H4' | 109.5° | 110.5° |
C4' | C' | C1' | 104.5° | 106.6° |
C4' | C' | CM' | 102.9° | 110.0° |
C4' | C' | H' | 111.6° | 110.0° |
O3' | C3' | C2' | 109.7° | 110.9° |
O3' | C3' | H3' | 111.9° | 110.7° |
C3' | O3' | HA | 109.3° | 106.8° |
C2' | C3' | H3' | 111.9° | 110.8° |
C3' | C2' | C1' | 102.9° | 104.2° |
C3' | C2' | H2'1 | 114.7° | 110.5° |
C3' | C2' | H2'2 | 114.7° | 110.5° |
C1' | C2' | H2'1 | 114.7° | 110.4° |
C1' | C2' | H2'2 | 114.7° | 110.5° |
C2' | C1' | N1 | 115.7° | 110.0° |
C2' | C1' | C' | 102.0° | 106.5° |
C2' | C1' | H1' | 106.6° | 110.1° |
H2'1 | C2' | H2'2 | 95.8° | 110.6° |
N1 | C1' | C' | 118.5° | 110.1° |
N1 | C1' | H1' | 106.6° | 110.0° |
C1' | N1 | C2 | 115.3° | 119.7° |
C1' | N1 | C6 | 124.6° | 119.7° |
C' | C1' | H1' | 106.6° | 110.1° |
C1' | C' | CM' | 114.1° | 110.0° |
C1' | C' | H' | 111.6° | 110.0° |
C2 | N1 | C6 | 120.1° | 120.6° |
N1 | C2 | O2 | 124.5° | 119.5° |
N1 | C2 | N3 | 117.6° | 120.9° |
N1 | C6 | C5 | 120.9° | 119.7° |
N1 | C6 | H6 | 119.6° | 120.1° |
O2 | C2 | N3 | 117.9° | 119.5° |
C2 | N3 | C4 | 126.1° | 120.2° |
C2 | N3 | H3 | 117.0° | 119.8° |
C4 | N3 | H3 | 117.0° | 119.9° |
N3 | C4 | O4 | 121.2° | 120.3° |
N3 | C4 | C5 | 112.8° | 119.4° |
O4 | C4 | C5 | 126.0° | 120.4° |
C4 | C5 | C5M | 115.4° | 120.4° |
C4 | C5 | C6 | 122.5° | 119.1° |
C5M | C5 | C6 | 122.1° | 120.5° |
C5 | C5M | H5M1 | 122.1° | 109.5° |
C5 | C5M | H5M2 | 107.7° | 109.5° |
C5 | C5M | H5M3 | 107.7° | 109.4° |
C5 | C6 | H6 | 119.5° | 120.1° |
H5M1 | C5M | H5M2 | 107.7° | 109.5° |
H5M1 | C5M | H5M3 | 107.7° | 109.4° |
H5M2 | C5M | H5M3 | 102.1° | 109.5° |
CM' | C' | H' | 111.6° | 110.0° |
C' | CM' | HM'1 | 102.9° | 109.4° |
C' | CM' | HM'2 | 114.7° | 109.4° |
C' | CM' | HM'3 | 114.7° | 109.5° |
HM'1 | CM' | HM'2 | 114.7° | 109.5° |
HM'1 | CM' | HM'3 | 114.7° | 109.5° |
HM'2 | CM' | HM'3 | 95.7° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1P | P | O2P | O3P | 126.5° | 120.1° |
O1P | P | O2P | O5' | 127.1° | 120.0° |
O1P | P | O3P | O5' | 113.0° | 119.9° |
O1P | P | O2P | H2P | 180.0° | 60.0° |
O1P | P | O3P | H3P | 180.0° | 180.0° |
O1P | P | O5' | C5' | 175.1° | 60.0° |
O2P | P | O3P | O5' | 112.0° | 120.0° |
O2P | P | O3P | H3P | 45.0° | 60.0° |
O2P | P | O5' | C5' | 49.1° | 180.0° |
O3P | P | O2P | H2P | 53.5° | 60.0° |
O3P | P | O5' | C5' | 61.2° | 60.0° |
O5' | P | O2P | H2P | 52.9° | 180.0° |
O5' | P | O3P | H3P | 67.0° | 60.0° |
P | O5' | C5' | C4' | 153.2° | 180.0° |
P | O5' | C5' | H5'1 | 27.9° | 60.0° |
P | O5' | C5' | H5'2 | 81.6° | 60.1° |
O5' | C5' | C4' | H5'1 | 125.3° | 120.1° |
O5' | C5' | C4' | H5'2 | 125.3° | 119.9° |
O5' | C5' | H5'1 | H5'2 | 117.9° | 120.0° |
O5' | C5' | C4' | C3' | 43.0° | 65.3° |
O5' | C5' | C4' | C' | 74.9° | 179.9° |
O5' | C5' | C4' | H4' | 163.2° | 57.4° |
C4' | C5' | H5'1 | H5'2 | 117.9° | 120.0° |
C5' | C4' | C3' | C' | 121.7° | 118.7° |
C5' | C4' | C3' | H4' | 120.1° | 122.6° |
C5' | C4' | C' | H4' | 122.0° | 122.5° |
C5' | C4' | C3' | O3' | 139.1° | 84.9° |
C5' | C4' | C3' | C2' | 104.9° | 156.7° |
C5' | C4' | C3' | H3' | 14.7° | 38.3° |
C5' | C4' | C' | C1' | 131.1° | 142.4° |
C5' | C4' | C' | CM' | 109.5° | 98.3° |
C5' | C4' | C' | H' | 10.3° | 23.1° |
H5'1 | C5' | C4' | C3' | 168.3° | 54.8° |
H5'1 | C5' | C4' | C' | 50.4° | 60.0° |
H5'1 | C5' | C4' | H4' | 71.6° | 177.5° |
H5'2 | C5' | C4' | C3' | 82.2° | 174.8° |
H5'2 | C5' | C4' | C' | 159.9° | 60.0° |
H5'2 | C5' | C4' | H4' | 37.9° | 62.5° |
C3' | C4' | C' | H4' | 118.3° | 118.7° |
C4' | C3' | O3' | C2' | 110.8° | 113.4° |
C4' | C3' | O3' | H3' | 124.5° | 123.2° |
C4' | C3' | C2' | H3' | 119.6° | 118.4° |
C4' | C3' | O3' | HA | 180.0° | 180.0° |
C4' | C3' | C2' | C1' | 40.2° | 38.0° |
C4' | C3' | C2' | H2'1 | 165.5° | 156.6° |
C4' | C3' | C2' | H2'2 | 85.0° | 80.7° |
C3' | C4' | C' | C1' | 11.3° | 23.6° |
C3' | C4' | C' | CM' | 130.8° | 142.9° |
C3' | C4' | C' | H' | 109.5° | 95.7° |
C' | C4' | C3' | O3' | 99.2° | 156.4° |
C' | C4' | C3' | C2' | 16.8° | 38.0° |
C' | C4' | C3' | H3' | 136.4° | 80.4° |
C4' | C' | C1' | C2' | 36.7° | 0.1° |
C4' | C' | C1' | N1 | 165.0° | 119.3° |
C4' | C' | C1' | CM' | 111.5° | 119.3° |
C4' | C' | C1' | H' | 120.8° | 119.3° |
C4' | C' | C1' | H1' | 74.9° | 119.3° |
C4' | C' | CM' | H' | 119.8° | 121.4° |
C4' | C' | CM' | HM'1 | 180.0° | 179.3° |
C4' | C' | CM' | HM'2 | 54.7° | 59.3° |
C4' | C' | CM' | HM'3 | 54.7° | 60.7° |
H4' | C4' | C3' | O3' | 19.0° | 37.8° |
H4' | C4' | C3' | C2' | 135.0° | 80.7° |
H4' | C4' | C3' | H3' | 105.4° | 160.9° |
H4' | C4' | C' | C1' | 106.9° | 95.1° |
H4' | C4' | C' | CM' | 12.5° | 24.2° |
H4' | C4' | C' | H' | 132.3° | 145.6° |
O3' | C3' | C2' | H3' | 124.7° | 123.3° |
O3' | C3' | C2' | C1' | 75.4° | 156.3° |
O3' | C3' | C2' | H2'1 | 49.8° | 85.1° |
O3' | C3' | C2' | H2'2 | 159.3° | 37.6° |
C2' | C3' | O3' | HA | 69.2° | 66.6° |
C3' | C2' | C1' | H2'1 | 125.3° | 118.6° |
C3' | C2' | C1' | H2'2 | 125.2° | 118.7° |
C3' | C2' | H2'1 | H2'2 | 120.6° | 122.6° |
C3' | C2' | C1' | N1 | 177.9° | 95.7° |
C3' | C2' | C1' | C' | 47.9° | 23.7° |
C3' | C2' | C1' | H1' | 63.8° | 143.0° |
H3' | C3' | O3' | HA | 55.6° | 56.8° |
H3' | C3' | C2' | C1' | 159.8° | 80.4° |
H3' | C3' | C2' | H2'1 | 74.9° | 38.2° |
H3' | C3' | C2' | H2'2 | 34.6° | 160.9° |
C1' | C2' | H2'1 | H2'2 | 120.6° | 122.7° |
C2' | C1' | N1 | C' | 121.5° | 117.2° |
C2' | C1' | N1 | H1' | 118.3° | 121.4° |
C2' | C1' | C' | H1' | 111.6° | 119.3° |
C2' | C1' | N1 | C2 | 152.3° | 114.3° |
C2' | C1' | N1 | C6 | 27.7° | 65.4° |
C2' | C1' | C' | CM' | 148.3° | 119.3° |
C2' | C1' | C' | H' | 84.1° | 119.3° |
H2'1 | C2' | C1' | N1 | 56.9° | 22.9° |
H2'1 | C2' | C1' | C' | 173.1° | 142.3° |
H2'1 | C2' | C1' | H1' | 61.5° | 98.4° |
H2'2 | C2' | C1' | N1 | 52.6° | 145.6° |
H2'2 | C2' | C1' | C' | 77.4° | 95.0° |
H2'2 | C2' | C1' | H1' | 171.0° | 24.3° |
N1 | C1' | C' | H1' | 120.1° | 121.4° |
C1' | N1 | C2 | C6 | 180.0° | 179.7° |
C1' | N1 | C2 | O2 | 0.3° | 0.3° |
C1' | N1 | C2 | N3 | 179.1° | 179.7° |
C1' | N1 | C6 | C5 | 178.8° | 180.0° |
C1' | N1 | C6 | H6 | 1.3° | 0.0° |
N1 | C1' | C' | CM' | 83.5° | 121.4° |
N1 | C1' | C' | H' | 44.2° | 0.0° |
C' | C1' | N1 | C2 | 86.2° | 128.5° |
C' | C1' | N1 | C6 | 93.8° | 51.8° |
C1' | C' | CM' | H' | 127.7° | 121.4° |
C1' | C' | CM' | HM'1 | 67.5° | 62.1° |
C1' | C' | CM' | HM'2 | 167.3° | 57.9° |
C1' | C' | CM' | HM'3 | 57.8° | 178.0° |
H1' | C1' | N1 | C2 | 33.9° | 7.1° |
H1' | C1' | N1 | C6 | 146.1° | 173.2° |
H1' | C1' | C' | CM' | 36.6° | 0.0° |
H1' | C1' | C' | H' | 164.3° | 121.4° |
N1 | C2 | O2 | N3 | 179.5° | 179.4° |
N1 | C2 | N3 | C4 | 0.3° | 0.6° |
N1 | C2 | N3 | H3 | 179.7° | 179.8° |
C2 | N1 | C6 | C5 | 1.2° | 0.3° |
C2 | N1 | C6 | H6 | 178.7° | 179.7° |
C6 | N1 | C2 | O2 | 179.7° | 180.0° |
C6 | N1 | C2 | N3 | 0.8° | 0.5° |
N1 | C6 | C5 | C4 | 0.5° | 0.0° |
N1 | C6 | C5 | C5M | 178.9° | 180.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
O2 | C2 | N3 | C4 | 179.2° | 180.0° |
O2 | C2 | N3 | H3 | 0.8° | 0.3° |
C2 | N3 | C4 | H3 | 180.0° | 179.7° |
C2 | N3 | C4 | O4 | 178.6° | 179.7° |
C2 | N3 | C4 | C5 | 1.0° | 0.3° |
N3 | C4 | O4 | C5 | 179.5° | 180.0° |
N3 | C4 | C5 | C5M | 180.0° | 180.0° |
N3 | C4 | C5 | C6 | 0.5° | 0.1° |
H3 | N3 | C4 | O4 | 1.4° | 0.0° |
H3 | N3 | C4 | C5 | 179.1° | 180.0° |
O4 | C4 | C5 | C5M | 0.4° | 0.0° |
O4 | C4 | C5 | C6 | 179.0° | 180.0° |
C4 | C5 | C5M | C6 | 179.4° | 179.9° |
C4 | C5 | C5M | H5M1 | 0.6° | 0.0° |
C4 | C5 | C5M | H5M2 | 125.8° | 120.1° |
C4 | C5 | C5M | H5M3 | 124.7° | 119.9° |
C4 | C5 | C6 | H6 | 179.5° | 180.0° |
C5 | C5M | H5M1 | H5M2 | 125.2° | 120.0° |
C5 | C5M | H5M1 | H5M3 | 125.3° | 120.0° |
C5 | C5M | H5M2 | H5M3 | 113.3° | 120.0° |
C5M | C5 | C6 | H6 | 1.2° | 0.0° |
C6 | C5 | C5M | H5M1 | 180.0° | 180.0° |
C6 | C5 | C5M | H5M2 | 54.8° | 60.0° |
C6 | C5 | C5M | H5M3 | 54.7° | 60.0° |
H5M1 | C5M | H5M2 | H5M3 | 113.3° | 120.0° |
C' | CM' | HM'1 | HM'2 | 125.3° | 119.9° |
C' | CM' | HM'1 | HM'3 | 125.3° | 120.0° |
C' | CM' | HM'2 | HM'3 | 120.6° | 120.0° |
H' | C' | CM' | HM'1 | 60.2° | 59.3° |
H' | C' | CM' | HM'2 | 65.1° | 179.3° |
H' | C' | CM' | HM'3 | 174.5° | 60.6° |
HM'1 | CM' | HM'2 | HM'3 | 120.6° | 120.0° |