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T2Q

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C13C12doub1.36Å1.39Å
C13C5sing1.41Å1.44Å
C12C8sing1.41Å1.48Å
OP3NAAsing1.21Å1.36ÅAromatic
OP3CAAsing1.34Å1.36ÅAromatic
NAAC7doub1.31Å1.34ÅAromatic
CAAC5sing1.48Å1.52Å
CAAN6doub1.32Å1.33ÅAromatic
C5C4doub1.38Å1.42Å
C8O4doub1.22Å1.40Å
C8N9sing1.35Å1.39Å
C7N6sing1.35Å1.37ÅAromatic
C7CABsing1.48Å1.52Å
C21C22sing1.53Å1.51Å
C21N1sing1.47Å1.44Å
C1CABdoub1.39Å1.38ÅAromatic
C1C6sing1.38Å1.38ÅAromatic
C22C23sing1.53Å1.52Å
CABC3sing1.39Å1.38ÅAromatic
C6C5'doub1.39Å1.39ÅAromatic
C4N9sing1.35Å1.44Å
C17C18doub1.38Å1.38ÅAromatic
C17C16sing1.38Å1.38ÅAromatic
N9C1'sing1.46Å1.44Å
C18C2sing1.39Å1.38ÅAromatic
C23S1sing1.81Å1.81Å
C23C24sing1.53Å1.54Å
C16C2'doub1.38Å1.38ÅAromatic
C2N1sing1.40Å1.45Å
C2C20doub1.39Å1.38ÅAromatic
N1C25sing1.47Å1.45Å
O3'S1doub1.42Å1.46Å
C2'C20sing1.38Å1.38ÅAromatic
C2'C1'sing1.51Å1.52Å
C3C4'doub1.38Å1.38ÅAromatic
F2C27sing1.40Å1.36Å
C5'C4'sing1.39Å1.38ÅAromatic
C5'O5'sing1.36Å1.40Å
C26S1sing1.81Å1.81Å
S1OP1doub1.42Å1.46Å
C24C25sing1.53Å1.54Å
O5'C27sing1.43Å1.40Å
C27F3sing1.40Å1.36Å
C27F1sing1.40Å1.36Å
C4H1sing1.08Å1.08Å
C6H2sing1.08Å1.08Å
C13H3sing1.08Å1.08Å
C17H4sing1.08Å1.08Å
C20H5sing1.08Å1.08Å
C21H6sing1.09Å1.10Å
C21H7sing1.09Å1.10Å
C22H8sing1.09Å1.10Å
C22H9sing1.09Å1.10Å
C24H10sing1.09Å1.10Å
C24H11sing1.09Å1.10Å
C26H12sing1.09Å1.10Å
C26H13sing1.09Å1.10Å
C26H14sing1.09Å1.10Å
C1H15sing1.08Å1.08Å
C1'H16sing1.09Å1.10Å
C1'H17sing1.09Å1.10Å
C12H18sing1.08Å1.08Å
C16H19sing1.08Å1.08Å
C18H20sing1.08Å1.08Å
C23H21sing1.09Å1.10Å
C25H22sing1.09Å1.10Å
C25H23sing1.09Å1.10Å
C3H24sing1.08Å1.08Å
C4'H25sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C12C13C5120.0°119.1°
C13C12C8119.9°119.5°
C12C13H3120.0°120.5°
C13C12H18120.0°120.3°
C13C5CAA120.8°120.3°
C13C5C4120.2°119.5°
C5C13H3120.0°120.5°
C12C8O4120.2°119.8°
C12C8N9119.7°120.5°
C8C12H18120.0°120.2°
NAAOP3CAA107.7°110.0°
OP3NAAC7107.8°110.3°
OP3CAAC5126.6°126.6°
OP3CAAN6108.2°106.8°
NAAC7N6108.3°107.4°
NAAC7CAB126.8°126.3°
C5CAAN6125.1°126.6°
CAAC5C4119.0°120.2°
CAAN6C7108.0°105.5°
C5C4N9119.9°120.5°
C5C4H1120.1°119.8°
O4C8N9120.1°119.8°
C8N9C4120.3°121.0°
C8N9C1'120.6°119.5°
N6C7CAB125.0°126.3°
C7CABC1120.8°120.0°
C7CABC3118.9°120.1°
C22C21N1108.7°109.5°
C21C22C23110.1°109.3°
C22C21H6109.6°109.5°
C22C21H7109.7°109.5°
C21C22H8109.3°109.5°
C21C22H9109.3°109.5°
C21N1C2120.5°111.0°
C21N1C25119.1°111.2°
N1C21H6109.7°109.4°
N1C21H7109.7°109.5°
CABC1C6119.8°119.9°
C1CABC3120.2°119.9°
CABC1H15120.1°120.1°
C1C6C5'120.1°120.1°
C1C6H2119.9°120.0°
C6C1H15120.1°120.0°
C22C23S1109.0°109.5°
C22C23C24110.6°109.2°
C23C22H8109.3°109.5°
C23C22H9109.3°109.5°
C22C23H21110.6°109.5°
CABC3C4'120.0°119.9°
CABC3H24120.0°120.0°
C6C5'C4'119.9°120.1°
C6C5'O5'120.4°119.9°
C5'C6H2120.0°120.0°
C4N9C1'119.1°119.5°
N9C4H1120.1°119.8°
C18C17C16119.8°120.1°
C17C18C2120.3°119.9°
C18C17H4120.1°119.9°
C17C18H20119.9°120.0°
C17C16C2'119.9°120.2°
C16C17H4120.1°120.0°
C17C16H19120.1°119.9°
N9C1'C2'109.3°109.4°
N9C1'H16109.5°109.5°
N9C1'H17109.5°109.5°
C18C2N1120.2°120.1°
C18C2C20119.7°119.9°
C2C18H20119.8°120.1°
S1C23C24109.0°109.5°
C23S1O3'111.2°108.6°
C23S1C26109.5°101.9°
C23S1OP1111.1°108.6°
S1C23H21107.2°109.5°
C23C24C25113.3°109.3°
C23C24H10108.5°109.5°
C23C24H11108.5°109.6°
C24C23H21110.3°109.5°
C16C2'C20120.2°120.0°
C16C2'C1'120.1°120.0°
C2'C16H19120.1°119.9°
N1C2C20120.1°120.1°
C2N1C25120.4°111.0°
C2C20C2'120.0°119.9°
C2C20H5120.0°120.0°
N1C25C24111.7°109.5°
N1C25H22108.9°109.5°
N1C25H23108.9°109.5°
O3'S1C26111.6°108.6°
O3'S1OP1101.3°119.2°
C20C2'C1'119.7°120.0°
C2'C20H5120.0°120.0°
C2'C1'H16109.5°109.5°
C2'C1'H17109.5°109.5°
C3C4'C5'120.0°120.1°
C4'C3H24120.0°120.0°
C3C4'H25120.0°120.0°
F2C27O5'109.5°109.4°
F2C27F3109.8°109.5°
F2C27F1109.3°109.4°
C4'C5'O5'119.7°119.9°
C5'C4'H25120.0°119.9°
C5'O5'C27115.5°117.0°
C26S1OP1111.8°108.6°
S1C26H12109.5°109.5°
S1C26H13109.5°109.4°
S1C26H14109.5°109.4°
C25C24H10108.5°109.5°
C25C24H11108.5°109.5°
C24C25H22108.9°109.4°
C24C25H23108.9°109.4°
O5'C27F3109.9°109.5°
O5'C27F1109.0°109.5°
F3C27F1109.3°109.5°
H6C21H7109.5°109.5°
H8C22H9109.5°109.5°
H10C24H11109.5°109.5°
H12C26H13109.5°109.5°
H12C26H14109.5°109.5°
H13C26H14109.4°109.5°
H16C1'H17109.5°109.5°
H22C25H23109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C12C13C5H3180.0°180.0°
C13C12C8H18180.0°180.0°
C12C13C5CAA179.9°180.0°
C12C13C5C40.3°0.0°
C13C12C8O4179.9°180.0°
C13C12C8N90.2°0.0°
C5C13C12C80.2°0.0°
C13C5CAAOP322.7°179.6°
C13C5CAAC4179.8°180.0°
C13C5CAAN6157.4°0.0°
C13C5C4N90.3°0.1°
C13C5C4H1179.7°179.8°
C5C13C12H18179.8°180.0°
C12C8O4N9179.9°180.0°
C12C8N9C40.2°0.1°
C12C8N9C1'179.9°179.7°
C8C12C13H3179.7°180.0°
NAAOP3CAAC5179.9°180.0°
NAAOP3CAAN60.0°0.4°
OP3NAAC7N60.0°0.0°
OP3NAAC7CAB179.9°179.7°
CAAOP3NAAC70.0°0.2°
OP3CAAC5N6179.9°179.6°
OP3CAAC5C4157.5°0.4°
OP3CAAN6C70.0°0.4°
NAAC7N6CAA0.0°0.2°
NAAC7N6CAB179.9°179.7°
NAAC7CABC110.4°0.3°
NAAC7CABC3170.0°179.6°
C5CAAN6C7179.9°180.0°
CAAC5C4N9179.9°179.9°
CAAC5C4H10.1°0.3°
CAAC5C13H30.1°0.0°
N6CAAC5C422.4°180.0°
CAAN6C7CAB179.8°180.0°
C5C4N9C80.3°0.1°
C5C4N9H1180.0°179.8°
C5C4N9C1'180.0°179.7°
C4C5C13H3179.7°180.0°
O4C8N9C4179.9°179.9°
O4C8N9C1'0.2°0.3°
O4C8C12H180.1°0.0°
C8N9C4C1'179.7°179.6°
C8N9C1'C2'75.3°90.3°
C8N9C4H1179.7°179.7°
C8N9C1'H1644.7°149.7°
C8N9C1'H17164.8°29.7°
N9C8C12H18179.8°180.0°
N6C7CABC1169.4°180.0°
N6C7CABC310.2°0.0°
C7CABC1C3179.6°179.9°
C7CABC1C6179.8°180.0°
C7CABC3C4'179.8°179.7°
C7CABC1H150.2°0.0°
C7CABC3H240.2°0.2°
C22C21N1H6119.9°120.0°
C22C21N1H7119.9°120.0°
C21C22C23H8120.1°120.0°
C21C22C23H9120.1°119.9°
C21C22C23S1168.1°177.6°
C21C22C23C2448.2°57.7°
C22C21N1C2155.7°174.1°
C22C21N1C2523.9°61.8°
C22C21H6H7120.3°120.0°
C21C22H8H9119.7°120.1°
C21C22C23H2174.4°62.3°
N1C21C22C2366.6°59.2°
C21N1C2C1847.6°124.2°
C21N1C2C25179.6°124.2°
C21N1C2C20132.9°55.8°
C21N1C25C2432.1°61.8°
N1C21H6H7120.4°120.0°
N1C21C22H853.5°60.7°
N1C21C22H9173.4°179.1°
C21N1C25H22152.4°58.2°
C21N1C25H2388.3°178.2°
CABC1C6H15180.0°180.0°
CABC1C6C5'0.1°0.0°
C1CABC3C4'0.2°0.2°
CABC1C6H2179.9°179.7°
C1CABC3H24179.8°179.8°
C6C1CABC30.2°0.0°
C1C6C5'H2180.0°179.7°
C1C6C5'C4'0.3°0.3°
C1C6C5'O5'179.7°179.7°
C22C23S1C24120.9°119.7°
C22C23S1H21119.7°120.2°
C22C23C24H21122.7°119.9°
C22C23S1O3'33.6°70.5°
C22C23S1C26157.5°175.0°
C22C23S1OP178.5°60.5°
C22C23C24C258.2°57.6°
C23C22C21H653.3°179.2°
C23C22C21H7173.6°60.8°
C23C22H8H9119.7°120.1°
C22C23C24H10128.8°62.3°
C22C23C24H11112.4°177.6°
CABC3C4'H24180.0°179.5°
CABC3C4'C5'0.0°0.5°
C3CABC1H15179.8°180.0°
CABC3C4'H25180.0°179.5°
C6C5'C4'C30.2°0.6°
C6C5'C4'O5'179.5°180.0°
C6C5'O5'C2753.1°180.0°
C5'C6C1H15180.0°180.0°
C6C5'C4'H25179.8°179.4°
C4N9C1'C2'104.5°90.1°
C4N9C1'H16135.6°29.9°
C4N9C1'H1715.5°150.0°
C18C17C16H4180.0°179.8°
C17C18C2H20180.0°180.0°
C18C17C16C2'0.0°0.0°
C17C18C2N1179.8°180.0°
C17C18C2C200.3°0.0°
C18C17C16H19180.0°180.0°
C16C17C18C20.2°0.0°
C17C16C2'H19180.0°180.0°
C17C16C2'C200.1°0.0°
C17C16C2'C1'180.0°180.0°
C16C17C18H20179.8°180.0°
N9C1'C2'C1663.2°90.0°
N9C1'C2'C20116.7°90.0°
N9C1'C2'H16120.0°120.0°
N9C1'C2'H17120.0°120.0°
C1'N9C4H10.0°0.1°
N9C1'H16H17120.1°120.0°
C18C2N1C20179.5°180.0°
C18C2N1C25132.0°0.0°
C18C2C20C2'0.2°0.1°
C2C18C17H4179.7°179.8°
C18C2C20H5179.8°180.0°
S1C23C24H21117.5°120.1°
C23S1O3'C26122.7°110.0°
C23S1O3'OP1118.2°125.0°
C23S1C26OP1123.6°114.5°
S1C23C24C25111.6°177.6°
S1C23C22H848.0°57.6°
S1C23C22H971.9°62.5°
S1C23C24H109.0°57.6°
S1C23C24H11127.8°62.5°
C23S1C26H12180.0°60.0°
C23S1C26H1360.0°180.0°
C23S1C26H1460.0°60.0°
C23C24C25N148.8°59.2°
C24C23S1O3'154.5°169.8°
C24C23S1C2681.6°55.3°
C24C23S1OP142.4°59.2°
C23C24C25H10120.6°120.0°
C23C24C25H11120.6°120.0°
C24C23C22H871.9°62.3°
C24C23C22H9168.3°177.6°
C23C24H10H11118.2°120.2°
C23C24C25H22169.2°60.9°
C23C24C25H2371.5°179.2°
C16C2'C20C20.0°0.0°
C16C2'C20C1'180.0°180.0°
C2'C16C17H4179.9°179.7°
C16C2'C20H5180.0°180.0°
C16C2'C1'H16176.8°150.0°
C16C2'C1'H1756.7°30.0°
N1C2C20C2'179.6°180.0°
C2N1C25C24148.3°174.2°
N1C2C20H50.4°0.0°
C2N1C21H684.4°54.2°
C2N1C21H735.8°65.8°
N1C2C18H200.3°0.0°
C2N1C25H2228.0°65.8°
C2N1C25H2391.3°54.2°
C20C2N1C2547.5°180.0°
C2C20C2'H5180.0°180.0°
C2C20C2'C1'180.0°179.9°
C20C2C18H20179.7°180.0°
N1C25C24H22120.3°120.0°
N1C25C24H23120.4°120.0°
C25N1C21H696.0°178.2°
C25N1C21H7143.8°58.2°
N1C25C24H10169.4°60.8°
N1C25C24H1171.8°179.2°
N1C25H22H23119.0°120.1°
O3'S1C26OP1112.7°131.0°
O3'S1C26H1256.3°174.5°
O3'S1C26H1363.7°65.5°
O3'S1C26H14176.3°54.5°
O3'S1C23H2186.1°49.6°
C20C2'C1'H163.2°30.0°
C20C2'C1'H17123.3°150.0°
C20C2'C16H19179.9°180.0°
C1'C2'C20H50.0°0.0°
C2'C1'H16H17120.1°120.0°
C1'C2'C16H190.0°0.0°
C3C4'C5'H25180.0°180.0°
C3C4'C5'O5'179.7°179.5°
F2C27O5'C5'85.1°180.0°
F2C27O5'F3120.7°120.0°
F2C27O5'F1119.5°120.0°
F2C27F3F1119.9°120.0°
C4'C5'O5'C27127.4°0.0°
C4'C5'C6H2179.7°180.0°
C5'C4'C3H24180.0°179.9°
C5'O5'C27F335.6°60.0°
C5'O5'C27F1155.4°60.1°
O5'C5'C6H20.3°0.0°
O5'C5'C4'H250.3°0.5°
S1C26H12H13120.0°120.0°
S1C26H12H14120.0°120.0°
S1C26H13H14120.0°120.0°
C26S1C23H2137.8°64.8°
OP1S1C26H1256.4°54.5°
OP1S1C26H13176.4°65.5°
OP1S1C26H1463.6°174.5°
OP1S1C23H21161.8°179.4°
C25C24H10H11118.2°120.0°
C25C24C23H21130.9°62.3°
C24C25H22H23119.0°119.9°
O5'C27F3F1119.6°120.1°
H2C6C1H150.0°0.3°
H3C13C12H180.3°0.1°
H4C17C16H190.1°0.3°
H4C17C18H200.3°0.3°
H6C21C22H8173.4°59.2°
H6C21C22H966.8°60.9°
H7C21C22H866.3°179.2°
H7C21C22H953.5°59.1°
H8C22C23H21165.5°177.8°
H9C22C23H2145.7°57.6°
H10C24C23H21108.5°177.8°
H10C24C25H2270.3°179.2°
H10C24C25H2349.0°59.2°
H11C24C23H2110.3°57.6°
H11C24C25H2248.6°59.1°
H11C24C25H23167.9°60.8°
H12C26H13H14120.0°120.1°
H24C3C4'H250.0°0.0°

224931

PDB entries from 2024-09-11

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