T23
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.49Å | |
P | OP2 | sing | 1.61Å | 1.49Å | |
P | OP3 | sing | 1.61Å | 1.60Å | |
P | O5' | sing | 1.61Å | 1.61Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.42Å | |
N1 | C6 | sing | 1.37Å | 1.37Å | |
N1 | C2 | sing | 1.34Å | 1.39Å | |
N1 | C1' | sing | 1.46Å | 1.51Å | |
C6 | C5 | doub | 1.35Å | 1.35Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C2 | O2 | doub | 1.22Å | 1.23Å | |
C2 | N3 | sing | 1.35Å | 1.37Å | |
N3 | C4 | sing | 1.35Å | 1.38Å | |
N3 | H3 | sing | 0.97Å | 1.02Å | |
C4 | O4 | doub | 1.22Å | 1.23Å | |
C4 | C5 | sing | 1.41Å | 1.45Å | |
C5 | C5M | sing | 1.51Å | 1.50Å | |
C5M | H5A1 | sing | 1.09Å | 1.12Å | |
C5M | H5A2 | sing | 1.09Å | 1.12Å | |
C5M | H5A3 | sing | 1.09Å | 1.11Å | |
C2' | O2' | sing | 1.43Å | 1.37Å | |
C2' | C1' | sing | 1.55Å | 1.49Å | |
C2' | C3' | sing | 1.55Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | C2M | sing | 1.43Å | 1.43Å | |
C2M | H2M1 | sing | 1.09Å | 1.11Å | |
C2M | H2M2 | sing | 1.09Å | 1.12Å | |
C2M | H2M3 | sing | 1.09Å | 1.11Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.47Å | |
C4' | C3' | sing | 1.54Å | 1.51Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
C3' | C3M | sing | 1.53Å | 1.54Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
C3M | H3M1 | sing | 1.09Å | 1.11Å | |
C3M | H3M2 | sing | 1.09Å | 1.11Å | |
C3M | H3M3 | sing | 1.09Å | 1.11Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 120.0° | 109.5° |
OP1 | P | OP3 | 103.8° | 109.5° |
OP1 | P | O5' | 112.2° | 109.5° |
OP2 | P | OP3 | 112.1° | 109.4° |
OP2 | P | O5' | 103.9° | 109.4° |
P | OP2 | HOP2 | 119.9° | 106.8° |
OP3 | P | O5' | 104.0° | 109.5° |
P | OP3 | HOP3 | 103.8° | 106.9° |
P | O5' | C5' | 119.6° | 106.8° |
O5' | C5' | C4' | 107.7° | 109.5° |
O5' | C5' | H5' | 112.9° | 109.4° |
O5' | C5' | H5'' | 112.8° | 109.5° |
C6 | N1 | C2 | 121.2° | 120.6° |
C6 | N1 | C1' | 122.7° | 119.7° |
N1 | C6 | C5 | 122.6° | 119.7° |
N1 | C6 | H6 | 119.6° | 120.2° |
C2 | N1 | C1' | 116.1° | 119.7° |
N1 | C2 | O2 | 122.4° | 119.5° |
N1 | C2 | N3 | 115.2° | 121.0° |
N1 | C1' | C2' | 113.7° | 110.8° |
N1 | C1' | O4' | 106.9° | 110.6° |
N1 | C1' | H1' | 107.9° | 110.5° |
C5 | C6 | H6 | 117.8° | 120.1° |
C6 | C5 | C4 | 119.1° | 119.1° |
C6 | C5 | C5M | 122.5° | 120.5° |
O2 | C2 | N3 | 122.4° | 119.5° |
C2 | N3 | C4 | 126.8° | 120.2° |
C2 | N3 | H3 | 116.4° | 119.8° |
C4 | N3 | H3 | 116.9° | 120.0° |
N3 | C4 | O4 | 118.8° | 120.3° |
N3 | C4 | C5 | 114.9° | 119.4° |
O4 | C4 | C5 | 126.3° | 120.3° |
C4 | C5 | C5M | 118.3° | 120.4° |
C5 | C5M | H5A1 | 122.5° | 109.5° |
C5 | C5M | H5A2 | 107.6° | 109.5° |
C5 | C5M | H5A3 | 107.6° | 109.5° |
H5A1 | C5M | H5A2 | 107.5° | 109.5° |
H5A1 | C5M | H5A3 | 107.6° | 109.4° |
H5A2 | C5M | H5A3 | 102.2° | 109.4° |
O2' | C2' | C1' | 110.2° | 110.9° |
O2' | C2' | C3' | 109.2° | 110.9° |
O2' | C2' | H2' | 107.1° | 110.8° |
C2' | O2' | C2M | 119.5° | 106.8° |
C1' | C2' | C3' | 102.3° | 102.1° |
C1' | C2' | H2' | 113.5° | 110.9° |
C2' | C1' | O4' | 107.8° | 103.5° |
C2' | C1' | H1' | 107.0° | 110.6° |
C3' | C2' | H2' | 114.5° | 110.9° |
C2' | C3' | C4' | 99.2° | 104.2° |
C2' | C3' | C3M | 116.5° | 110.5° |
C2' | C3' | H3' | 114.8° | 110.5° |
O2' | C2M | H2M1 | 119.5° | 109.5° |
O2' | C2M | H2M2 | 108.6° | 109.5° |
O2' | C2M | H2M3 | 108.7° | 109.4° |
H2M1 | C2M | H2M2 | 108.6° | 109.5° |
H2M1 | C2M | H2M3 | 108.6° | 109.5° |
H2M2 | C2M | H2M3 | 101.4° | 109.4° |
C4' | C5' | H5' | 112.9° | 109.5° |
C4' | C5' | H5'' | 112.8° | 109.5° |
C5' | C4' | O4' | 107.8° | 110.0° |
C5' | C4' | C3' | 117.5° | 109.9° |
C5' | C4' | H4' | 103.7° | 109.9° |
H5' | C5' | H5'' | 97.6° | 109.4° |
O4' | C4' | C3' | 104.7° | 107.3° |
O4' | C4' | H4' | 116.8° | 109.9° |
C4' | O4' | C1' | 107.6° | 107.0° |
C3' | C4' | H4' | 106.9° | 109.8° |
C4' | C3' | C3M | 117.0° | 110.7° |
C4' | C3' | H3' | 114.3° | 110.4° |
O4' | C1' | H1' | 113.8° | 110.6° |
C3M | C3' | H3' | 96.2° | 110.4° |
C3' | C3M | H3M1 | 116.5° | 109.4° |
C3' | C3M | H3M2 | 109.6° | 109.4° |
C3' | C3M | H3M3 | 109.6° | 109.5° |
H3M1 | C3M | H3M2 | 109.7° | 109.5° |
H3M1 | C3M | H3M3 | 109.7° | 109.5° |
H3M2 | C3M | H3M3 | 100.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 122.0° | 120.1° |
OP1 | P | OP2 | O5' | 126.4° | 120.0° |
OP1 | P | OP3 | O5' | 117.5° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 179.9° |
OP1 | P | O5' | C5' | 47.4° | 60.0° |
OP2 | P | OP3 | O5' | 111.6° | 119.9° |
OP2 | P | OP3 | HOP3 | 49.1° | 60.0° |
OP2 | P | O5' | C5' | 178.5° | 180.0° |
OP3 | P | OP2 | HOP2 | 58.0° | 60.0° |
OP3 | P | O5' | C5' | 64.1° | 60.1° |
O5' | P | OP2 | HOP2 | 53.7° | 180.0° |
O5' | P | OP3 | HOP3 | 62.5° | 59.9° |
P | O5' | C5' | C4' | 178.2° | 180.0° |
P | O5' | C5' | H5' | 56.5° | 60.0° |
P | O5' | C5' | H5'' | 53.0° | 60.0° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.2° | 120.1° |
O5' | C5' | H5' | H5'' | 118.8° | 120.0° |
O5' | C5' | C4' | O4' | 70.7° | 62.1° |
O5' | C5' | C4' | C3' | 47.2° | 180.0° |
O5' | C5' | C4' | H4' | 164.9° | 59.0° |
C6 | N1 | C2 | C1' | 178.1° | 179.7° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
C6 | N1 | C2 | O2 | 176.7° | 180.0° |
C6 | N1 | C2 | N3 | 3.5° | 0.6° |
N1 | C6 | C5 | C4 | 0.3° | 0.0° |
N1 | C6 | C5 | C5M | 179.6° | 180.0° |
C6 | N1 | C1' | C2' | 89.8° | 124.4° |
C6 | N1 | C1' | O4' | 29.0° | 121.4° |
C6 | N1 | C1' | H1' | 151.7° | 1.4° |
C2 | N1 | C6 | C5 | 1.5° | 0.3° |
C2 | N1 | C6 | H6 | 178.5° | 179.7° |
N1 | C2 | O2 | N3 | 179.8° | 179.5° |
N1 | C2 | N3 | C4 | 4.7° | 0.5° |
N1 | C2 | N3 | H3 | 175.3° | 179.7° |
C2 | N1 | C1' | C2' | 88.3° | 56.0° |
C2 | N1 | C1' | O4' | 152.9° | 58.2° |
C2 | N1 | C1' | H1' | 30.2° | 178.9° |
C1' | N1 | C6 | C5 | 179.5° | 180.0° |
C1' | N1 | C6 | H6 | 0.5° | 0.1° |
C1' | N1 | C2 | O2 | 1.4° | 0.3° |
C1' | N1 | C2 | N3 | 178.4° | 179.8° |
N1 | C1' | C2' | O2' | 154.1° | 86.2° |
N1 | C1' | C2' | O4' | 118.3° | 118.6° |
N1 | C1' | C2' | H1' | 119.0° | 122.9° |
N1 | C1' | C2' | C3' | 89.9° | 155.6° |
N1 | C1' | C2' | H2' | 34.0° | 37.4° |
N1 | C1' | O4' | C4' | 119.1° | 158.7° |
N1 | C1' | O4' | H1' | 118.9° | 122.8° |
C6 | C5 | C4 | N3 | 1.1° | 0.0° |
C6 | C5 | C4 | O4 | 179.4° | 180.0° |
C6 | C5 | C4 | C5M | 179.3° | 180.0° |
C6 | C5 | C5M | H5A1 | 179.9° | 180.0° |
C6 | C5 | C5M | H5A2 | 54.8° | 59.9° |
C6 | C5 | C5M | H5A3 | 54.7° | 60.0° |
H6 | C6 | C5 | C4 | 179.7° | 180.0° |
H6 | C6 | C5 | C5M | 0.5° | 0.0° |
O2 | C2 | N3 | C4 | 175.5° | 180.0° |
O2 | C2 | N3 | H3 | 4.6° | 0.3° |
C2 | N3 | C4 | H3 | 180.0° | 179.7° |
C2 | N3 | C4 | O4 | 178.0° | 179.8° |
C2 | N3 | C4 | C5 | 3.6° | 0.3° |
N3 | C4 | O4 | C5 | 178.2° | 180.0° |
N3 | C4 | C5 | C5M | 179.5° | 180.0° |
H3 | N3 | C4 | O4 | 2.0° | 0.0° |
H3 | N3 | C4 | C5 | 176.4° | 180.0° |
O4 | C4 | C5 | C5M | 1.3° | 0.0° |
C4 | C5 | C5M | H5A1 | 0.8° | 0.0° |
C4 | C5 | C5M | H5A2 | 125.9° | 120.1° |
C4 | C5 | C5M | H5A3 | 124.6° | 120.0° |
C5 | C5M | H5A1 | H5A2 | 125.2° | 120.1° |
C5 | C5M | H5A1 | H5A3 | 125.3° | 120.0° |
C5 | C5M | H5A2 | H5A3 | 113.1° | 120.0° |
H5A1 | C5M | H5A2 | H5A3 | 113.2° | 119.9° |
O2' | C2' | C1' | C3' | 116.0° | 118.2° |
O2' | C2' | C1' | H2' | 120.1° | 123.6° |
O2' | C2' | C3' | H2' | 120.1° | 123.6° |
C2' | O2' | C2M | H2M1 | 180.0° | 179.9° |
C2' | O2' | C2M | H2M2 | 54.7° | 60.0° |
C2' | O2' | C2M | H2M3 | 54.7° | 60.0° |
O2' | C2' | C3' | C4' | 76.1° | 139.1° |
O2' | C2' | C1' | O4' | 87.6° | 155.2° |
O2' | C2' | C1' | H1' | 35.1° | 36.7° |
O2' | C2' | C3' | C3M | 50.3° | 20.2° |
O2' | C2' | C3' | H3' | 161.6° | 102.3° |
C1' | C2' | C3' | H2' | 123.2° | 118.2° |
C1' | C2' | O2' | C2M | 77.3° | 94.3° |
C2' | C1' | O4' | C4' | 3.5° | 40.0° |
C1' | C2' | C3' | C4' | 40.7° | 20.9° |
C2' | C1' | O4' | H1' | 118.5° | 118.5° |
C1' | C2' | C3' | C3M | 167.1° | 98.0° |
C1' | C2' | C3' | H3' | 81.6° | 139.5° |
C3' | C2' | O2' | C2M | 171.1° | 152.9° |
C2' | C3' | C4' | C5' | 159.0° | 121.6° |
C2' | C3' | C4' | O4' | 39.4° | 2.0° |
C2' | C3' | C4' | C3M | 126.1° | 118.8° |
C2' | C3' | C4' | H3' | 122.6° | 118.6° |
C2' | C3' | C4' | H4' | 85.1° | 117.4° |
C3' | C2' | C1' | O4' | 28.4° | 37.0° |
C3' | C2' | C1' | H1' | 151.2° | 81.5° |
C2' | C3' | C3M | H3' | 121.7° | 122.5° |
C2' | C3' | C3M | H3M1 | 179.9° | 180.0° |
C2' | C3' | C3M | H3M2 | 54.7° | 60.0° |
C2' | C3' | C3M | H3M3 | 54.7° | 59.9° |
H2' | C2' | O2' | C2M | 46.6° | 29.3° |
H2' | C2' | C3' | C4' | 163.8° | 97.3° |
H2' | C2' | C1' | O4' | 152.3° | 81.2° |
H2' | C2' | C1' | H1' | 85.0° | 160.3° |
H2' | C2' | C3' | C3M | 69.7° | 143.8° |
H2' | C2' | C3' | H3' | 41.5° | 21.3° |
O2' | C2M | H2M1 | H2M2 | 125.3° | 120.0° |
O2' | C2M | H2M1 | H2M3 | 125.3° | 120.0° |
O2' | C2M | H2M2 | H2M3 | 114.3° | 120.0° |
H2M1 | C2M | H2M2 | H2M3 | 114.3° | 120.0° |
C4' | C5' | H5' | H5'' | 118.8° | 120.0° |
C5' | C4' | O4' | C3' | 125.9° | 119.5° |
C5' | C4' | O4' | H4' | 116.1° | 121.1° |
C5' | C4' | C3' | H4' | 115.9° | 121.0° |
C5' | C4' | O4' | C1' | 149.4° | 146.0° |
C5' | C4' | C3' | C3M | 74.9° | 119.6° |
C5' | C4' | C3' | H3' | 36.4° | 2.9° |
H5' | C5' | C4' | O4' | 164.0° | 177.9° |
H5' | C5' | C4' | C3' | 78.1° | 60.0° |
H5' | C5' | C4' | H4' | 39.6° | 61.0° |
H5'' | C5' | C4' | O4' | 54.5° | 57.9° |
H5'' | C5' | C4' | C3' | 172.4° | 60.0° |
H5'' | C5' | C4' | H4' | 69.9° | 179.0° |
O4' | C4' | C3' | H4' | 124.5° | 119.4° |
C4' | O4' | C1' | H1' | 122.0° | 78.5° |
O4' | C4' | C3' | C3M | 165.5° | 120.8° |
O4' | C4' | C3' | H3' | 83.2° | 116.6° |
C3' | C4' | O4' | C1' | 23.5° | 26.5° |
C4' | C3' | C3M | H3' | 121.3° | 122.6° |
C4' | C3' | C3M | H3M1 | 62.9° | 65.1° |
C4' | C3' | C3M | H3M2 | 62.3° | 54.8° |
C4' | C3' | C3M | H3M3 | 171.7° | 174.8° |
H4' | C4' | O4' | C1' | 94.5° | 92.9° |
H4' | C4' | C3' | C3M | 41.1° | 1.4° |
H4' | C4' | C3' | H3' | 152.3° | 124.0° |
C3' | C3M | H3M1 | H3M2 | 125.2° | 119.9° |
C3' | C3M | H3M1 | H3M3 | 125.3° | 120.1° |
C3' | C3M | H3M2 | H3M3 | 115.4° | 120.0° |
H3' | C3' | C3M | H3M1 | 58.4° | 57.5° |
H3' | C3' | C3M | H3M2 | 176.4° | 177.4° |
H3' | C3' | C3M | H3M3 | 67.0° | 62.6° |
H3M1 | C3M | H3M2 | H3M3 | 115.6° | 120.0° |