T0T
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O5' | sing | 1.61Å | 1.57Å | |
| P | OP1 | sing | 1.61Å | 1.52Å | |
| P | OP2 | doub | 1.48Å | 1.49Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| C1 | C2 | doub | 1.38Å | 1.40Å | Aromatic |
| C1 | C6 | sing | 1.38Å | 1.40Å | Aromatic |
| C1 | C1' | sing | 1.51Å | 1.49Å | |
| C2 | C3 | sing | 1.38Å | 1.41Å | Aromatic |
| C3 | C4 | doub | 1.40Å | 1.40Å | Aromatic |
| C4 | C5 | sing | 1.40Å | 1.39Å | Aromatic |
| C4 | C7 | sing | 1.47Å | 1.50Å | |
| C5 | C6 | doub | 1.38Å | 1.40Å | Aromatic |
| C7 | C8 | doub | 1.34Å | 1.33Å | |
| C8 | C9 | sing | 1.47Å | 1.50Å | |
| C9 | C10 | doub | 1.40Å | 1.40Å | Aromatic |
| C9 | C14 | sing | 1.41Å | 1.43Å | Aromatic |
| C1' | C2' | sing | 1.55Å | 1.50Å | |
| C1' | O4' | sing | 1.44Å | 1.46Å | |
| C10 | C11 | sing | 1.38Å | 1.40Å | Aromatic |
| C11 | C12 | doub | 1.38Å | 1.39Å | Aromatic |
| C12 | C13 | sing | 1.38Å | 1.40Å | Aromatic |
| C13 | C14 | doub | 1.39Å | 1.42Å | Aromatic |
| C14 | N15 | sing | 1.39Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.54Å | |
| C3' | O3' | sing | 1.43Å | 1.39Å | |
| C3' | C4' | sing | 1.54Å | 1.48Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.49Å | |
| C5' | O5' | sing | 1.43Å | 1.36Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C7 | H7 | sing | 1.08Å | 1.08Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C10 | H10 | sing | 1.08Å | 1.08Å | |
| C11 | H11 | sing | 1.08Å | 1.08Å | |
| C12 | H12 | sing | 1.08Å | 1.08Å | |
| C13 | H13 | sing | 1.08Å | 1.08Å | |
| N15 | HN15 | sing | 0.97Å | 1.00Å | |
| N15 | HN1A | sing | 0.97Å | 1.00Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| OP1 | H21 | sing | 0.97Å | 0.95Å | |
| OP3 | H23 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | P | OP1 | 108.1° | 109.5° |
| O5' | P | OP2 | 109.6° | 109.5° |
| O5' | P | OP3 | 100.1° | 109.4° |
| P | O5' | C5' | 112.1° | 123.0° |
| OP1 | P | OP2 | 120.7° | 109.5° |
| OP1 | P | OP3 | 109.2° | 109.5° |
| P | OP1 | H21 | 109.5° | 114.0° |
| OP2 | P | OP3 | 107.2° | 109.4° |
| P | OP3 | H23 | 109.5° | 114.0° |
| C2 | C1 | C6 | 118.7° | 120.4° |
| C2 | C1 | C1' | 123.1° | 119.8° |
| C1 | C2 | C3 | 120.2° | 120.1° |
| C1 | C2 | H2 | 119.9° | 119.9° |
| C6 | C1 | C1' | 118.2° | 119.8° |
| C1 | C6 | C5 | 120.5° | 120.1° |
| C1 | C6 | H6 | 119.7° | 120.0° |
| C1 | C1' | C2' | 115.0° | 110.6° |
| C1 | C1' | O4' | 108.6° | 110.6° |
| C1 | C1' | H1' | 109.1° | 110.6° |
| C2 | C3 | C4 | 120.9° | 119.9° |
| C3 | C2 | H2 | 119.9° | 120.0° |
| C2 | C3 | H3 | 119.5° | 120.1° |
| C3 | C4 | C5 | 118.4° | 119.7° |
| C3 | C4 | C7 | 124.3° | 120.2° |
| C4 | C3 | H3 | 119.6° | 120.0° |
| C5 | C4 | C7 | 117.3° | 120.2° |
| C4 | C5 | C6 | 121.3° | 119.8° |
| C4 | C5 | H5 | 119.4° | 120.1° |
| C4 | C7 | C8 | 124.3° | 120.0° |
| C4 | C7 | H7 | 117.8° | 120.0° |
| C6 | C5 | H5 | 119.3° | 120.1° |
| C5 | C6 | H6 | 119.8° | 119.9° |
| C7 | C8 | C9 | 124.7° | 120.0° |
| C8 | C7 | H7 | 117.8° | 120.0° |
| C7 | C8 | H8 | 117.7° | 120.0° |
| C8 | C9 | C10 | 112.5° | 120.2° |
| C8 | C9 | C14 | 128.1° | 120.2° |
| C9 | C8 | H8 | 117.6° | 120.0° |
| C10 | C9 | C14 | 119.4° | 119.6° |
| C9 | C10 | C11 | 120.1° | 119.9° |
| C9 | C10 | H10 | 120.0° | 120.1° |
| C9 | C14 | C13 | 119.2° | 119.7° |
| C9 | C14 | N15 | 124.2° | 120.1° |
| C2' | C1' | O4' | 105.2° | 103.5° |
| C1' | C2' | C3' | 103.2° | 102.1° |
| C2' | C1' | H1' | 109.1° | 110.6° |
| C1' | C2' | H2' | 111.0° | 110.9° |
| C1' | C2' | H2'A | 111.0° | 110.9° |
| C1' | O4' | C4' | 109.8° | 107.0° |
| O4' | C1' | H1' | 109.6° | 110.7° |
| C10 | C11 | C12 | 121.0° | 120.3° |
| C11 | C10 | H10 | 119.9° | 120.0° |
| C10 | C11 | H11 | 119.5° | 119.8° |
| C11 | C12 | C13 | 120.0° | 120.4° |
| C12 | C11 | H11 | 119.5° | 119.8° |
| C11 | C12 | H12 | 120.0° | 119.8° |
| C12 | C13 | C14 | 120.2° | 120.1° |
| C13 | C12 | H12 | 120.0° | 119.8° |
| C12 | C13 | H13 | 119.9° | 119.9° |
| C13 | C14 | N15 | 116.2° | 120.2° |
| C14 | C13 | H13 | 119.9° | 120.0° |
| C14 | N15 | HN15 | 109.5° | 120.1° |
| C14 | N15 | HN1A | 109.5° | 119.9° |
| C2' | C3' | O3' | 114.6° | 110.5° |
| C2' | C3' | C4' | 102.2° | 104.2° |
| C3' | C2' | H2' | 111.0° | 110.9° |
| C3' | C2' | H2'A | 111.0° | 110.9° |
| C2' | C3' | H3' | 108.3° | 110.5° |
| O3' | C3' | C4' | 112.0° | 110.5° |
| O3' | C3' | H3' | 110.3° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | O4' | 105.1° | 107.3° |
| C3' | C4' | C5' | 105.7° | 109.9° |
| C4' | C3' | H3' | 109.0° | 110.6° |
| C3' | C4' | H4' | 111.7° | 109.9° |
| O4' | C4' | C5' | 110.0° | 109.9° |
| O4' | C4' | H4' | 112.2° | 109.9° |
| C4' | C5' | O5' | 112.1° | 109.4° |
| C5' | C4' | H4' | 111.7° | 110.0° |
| C4' | C5' | H5' | 108.8° | 109.5° |
| C4' | C5' | H5'A | 108.8° | 109.5° |
| O5' | C5' | H5' | 108.8° | 109.5° |
| O5' | C5' | H5'A | 108.8° | 109.5° |
| HN15 | N15 | HN1A | 109.4° | 120.0° |
| H2' | C2' | H2'A | 109.5° | 110.9° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P | OP1 | OP2 | 127.2° | 120.0° |
| O5' | P | OP1 | OP3 | 108.0° | 120.0° |
| O5' | P | OP2 | OP3 | 107.8° | 119.9° |
| P | O5' | C5' | C4' | 151.6° | 180.0° |
| P | O5' | C5' | H5' | 88.1° | 60.0° |
| P | O5' | C5' | H5'A | 31.2° | 60.0° |
| O5' | P | OP1 | H21 | 127.2° | 180.0° |
| O5' | P | OP3 | H23 | 114.3° | 60.1° |
| OP1 | P | OP2 | OP3 | 125.7° | 120.0° |
| OP1 | P | O5' | C5' | 175.3° | 175.0° |
| OP1 | P | OP3 | H23 | 132.4° | 60.0° |
| OP2 | P | O5' | C5' | 41.9° | 55.0° |
| OP2 | P | OP1 | H21 | 0.0° | 60.0° |
| OP2 | P | OP3 | H23 | 0.0° | 180.0° |
| OP3 | P | O5' | C5' | 70.6° | 65.0° |
| OP3 | P | OP1 | H21 | 124.8° | 60.0° |
| C2 | C1 | C6 | C1' | 179.1° | 179.8° |
| C1 | C2 | C3 | H2 | 180.0° | 180.0° |
| C1 | C2 | C3 | C4 | 0.8° | 0.0° |
| C2 | C1 | C6 | C5 | 1.8° | 0.0° |
| C2 | C1 | C1' | C2' | 59.0° | 100.0° |
| C2 | C1 | C1' | O4' | 58.6° | 145.9° |
| C1 | C2 | C3 | H3 | 179.2° | 180.0° |
| C2 | C1 | C6 | H6 | 178.2° | 180.0° |
| C2 | C1 | C1' | H1' | 178.0° | 22.9° |
| C6 | C1 | C2 | C3 | 1.7° | 0.0° |
| C1 | C6 | C5 | C4 | 0.8° | 0.0° |
| C1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | C1 | C1' | C2' | 120.0° | 80.3° |
| C6 | C1 | C1' | O4' | 122.4° | 33.8° |
| C6 | C1 | C2 | H2 | 178.2° | 180.0° |
| C1 | C6 | C5 | H5 | 179.2° | 180.0° |
| C6 | C1 | C1' | H1' | 2.9° | 156.8° |
| C1' | C1 | C2 | C3 | 179.2° | 179.8° |
| C1' | C1 | C6 | C5 | 179.1° | 179.7° |
| C1 | C1' | C2' | O4' | 119.5° | 118.5° |
| C1 | C1' | C2' | H1' | 122.9° | 122.9° |
| C1 | C1' | O4' | H1' | 119.1° | 122.9° |
| C1 | C1' | C2' | C3' | 146.4° | 155.5° |
| C1 | C1' | O4' | C4' | 129.7° | 158.6° |
| C1' | C1 | C2 | H2 | 0.8° | 0.2° |
| C1' | C1 | C6 | H6 | 0.9° | 0.3° |
| C1 | C1' | C2' | H2' | 94.6° | 86.3° |
| C1 | C1' | C2' | H2'A | 27.4° | 37.4° |
| C2 | C3 | C4 | H3 | 180.0° | 180.0° |
| C2 | C3 | C4 | C5 | 0.2° | 0.0° |
| C2 | C3 | C4 | C7 | 179.4° | 180.0° |
| C3 | C4 | C5 | C7 | 179.6° | 180.0° |
| C3 | C4 | C5 | C6 | 0.2° | 0.0° |
| C3 | C4 | C7 | C8 | 0.1° | 179.9° |
| C4 | C3 | C2 | H2 | 179.2° | 180.0° |
| C3 | C4 | C5 | H5 | 179.8° | 180.0° |
| C3 | C4 | C7 | H7 | 179.9° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C5 | C4 | C7 | C8 | 179.5° | 0.1° |
| C5 | C4 | C3 | H3 | 179.8° | 180.0° |
| C4 | C5 | C6 | H6 | 179.2° | 180.0° |
| C5 | C4 | C7 | H7 | 0.5° | 179.9° |
| C7 | C4 | C5 | C6 | 179.4° | 180.0° |
| C4 | C7 | C8 | H7 | 180.0° | 179.9° |
| C4 | C7 | C8 | C9 | 179.8° | 180.0° |
| C7 | C4 | C3 | H3 | 0.6° | 0.0° |
| C7 | C4 | C5 | H5 | 0.6° | 0.0° |
| C4 | C7 | C8 | H8 | 0.2° | 0.1° |
| C7 | C8 | C9 | H8 | 180.0° | 179.9° |
| C7 | C8 | C9 | C10 | 178.8° | 0.1° |
| C7 | C8 | C9 | C14 | 2.1° | 179.8° |
| C8 | C9 | C10 | C14 | 177.0° | 179.7° |
| C8 | C9 | C10 | C11 | 179.1° | 180.0° |
| C8 | C9 | C14 | C13 | 178.9° | 179.7° |
| C8 | C9 | C14 | N15 | 6.5° | 0.0° |
| C9 | C8 | C7 | H7 | 0.2° | 0.1° |
| C8 | C9 | C10 | H10 | 1.0° | 0.0° |
| C9 | C10 | C11 | H10 | 180.0° | 180.0° |
| C9 | C10 | C11 | C12 | 1.9° | 0.1° |
| C10 | C9 | C14 | C13 | 4.5° | 0.6° |
| C10 | C9 | C14 | N15 | 177.0° | 179.8° |
| C10 | C9 | C8 | H8 | 1.2° | 180.0° |
| C9 | C10 | C11 | H11 | 178.1° | 179.9° |
| C14 | C9 | C10 | C11 | 3.9° | 0.3° |
| C9 | C14 | C13 | C12 | 3.2° | 0.6° |
| C9 | C14 | C13 | N15 | 173.0° | 179.6° |
| C14 | C9 | C8 | H8 | 177.9° | 0.3° |
| C14 | C9 | C10 | H10 | 176.1° | 179.7° |
| C9 | C14 | C13 | H13 | 176.8° | 179.7° |
| C9 | C14 | N15 | HN15 | 180.0° | 0.1° |
| C9 | C14 | N15 | HN1A | 60.0° | 180.0° |
| C2' | C1' | O4' | H1' | 117.2° | 118.6° |
| C1' | C2' | C3' | H2' | 119.0° | 118.2° |
| C1' | C2' | C3' | H2'A | 119.0° | 118.2° |
| C1' | C2' | C3' | O3' | 83.8° | 97.8° |
| C1' | C2' | C3' | C4' | 37.5° | 20.9° |
| C2' | C1' | O4' | C4' | 6.1° | 40.0° |
| C1' | C2' | H2' | H2'A | 122.9° | 123.7° |
| C1' | C2' | C3' | H3' | 152.5° | 139.7° |
| O4' | C1' | C2' | C3' | 26.9° | 37.0° |
| C1' | O4' | C4' | C3' | 18.2° | 26.5° |
| C1' | O4' | C4' | C5' | 95.2° | 145.9° |
| O4' | C1' | C2' | H2' | 145.9° | 155.2° |
| O4' | C1' | C2' | H2'A | 92.1° | 81.2° |
| C1' | O4' | C4' | H4' | 139.8° | 93.0° |
| C10 | C11 | C12 | H11 | 180.0° | 179.9° |
| C10 | C11 | C12 | C13 | 0.5° | 0.1° |
| C10 | C11 | C12 | H12 | 179.5° | 180.0° |
| C11 | C12 | C13 | H12 | 180.0° | 180.0° |
| C11 | C12 | C13 | C14 | 1.2° | 0.3° |
| C12 | C11 | C10 | H10 | 178.1° | 179.9° |
| C11 | C12 | C13 | H13 | 178.8° | 180.0° |
| C12 | C13 | C14 | H13 | 180.0° | 179.7° |
| C12 | C13 | C14 | N15 | 176.2° | 179.8° |
| C13 | C12 | C11 | H11 | 179.5° | 179.9° |
| C14 | C13 | C12 | H12 | 178.8° | 179.7° |
| C13 | C14 | N15 | HN15 | 7.3° | 179.7° |
| C13 | C14 | N15 | HN1A | 112.6° | 0.4° |
| N15 | C14 | C13 | H13 | 3.8° | 0.0° |
| C14 | N15 | HN15 | HN1A | 120.0° | 179.9° |
| C2' | C3' | O3' | C4' | 115.8° | 114.8° |
| C2' | C3' | O3' | H3' | 122.6° | 122.5° |
| C2' | C3' | C4' | H3' | 114.5° | 118.7° |
| C2' | C3' | C4' | O4' | 34.0° | 2.0° |
| C2' | C3' | C4' | C5' | 82.4° | 121.4° |
| C3' | C2' | C1' | H1' | 90.7° | 81.6° |
| C3' | C2' | H2' | H2'A | 122.9° | 123.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | H4' | 155.9° | 117.5° |
| O3' | C3' | C4' | H3' | 122.3° | 122.6° |
| O3' | C3' | C4' | O4' | 89.2° | 120.7° |
| O3' | C3' | C4' | C5' | 154.4° | 119.8° |
| O3' | C3' | C2' | H2' | 35.2° | 20.4° |
| O3' | C3' | C2' | H2'A | 157.2° | 144.0° |
| O3' | C3' | C4' | H4' | 32.7° | 1.3° |
| C3' | C4' | O4' | C5' | 113.4° | 119.4° |
| C3' | C4' | O4' | H4' | 121.6° | 119.4° |
| C3' | C4' | C5' | H4' | 121.7° | 121.1° |
| C3' | C4' | C5' | O5' | 146.7° | 175.0° |
| C4' | C3' | C2' | H2' | 156.5° | 139.1° |
| C4' | C3' | C2' | H2'A | 81.5° | 97.3° |
| C4' | C3' | O3' | HO3' | 64.2° | 176.2° |
| C3' | C4' | C5' | H5' | 26.3° | 55.0° |
| C3' | C4' | C5' | H5'A | 92.9° | 65.0° |
| O4' | C4' | C5' | H4' | 125.3° | 121.1° |
| O4' | C4' | C5' | O5' | 100.3° | 67.2° |
| C4' | O4' | C1' | H1' | 111.1° | 78.5° |
| O4' | C4' | C3' | H3' | 148.5° | 116.7° |
| O4' | C4' | C5' | H5' | 139.4° | 172.9° |
| O4' | C4' | C5' | H5'A | 20.1° | 52.9° |
| C4' | C5' | O5' | H5' | 120.4° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.4° | 120.0° |
| C5' | C4' | C3' | H3' | 32.1° | 2.7° |
| C4' | C5' | H5' | H5'A | 118.8° | 120.0° |
| O5' | C5' | C4' | H4' | 25.0° | 53.9° |
| O5' | C5' | H5' | H5'A | 118.8° | 120.1° |
| H2 | C2 | C3 | H3 | 0.8° | 0.0° |
| H5 | C5 | C6 | H6 | 0.8° | 0.0° |
| H7 | C7 | C8 | H8 | 179.8° | 180.0° |
| H1' | C1' | C2' | H2' | 28.3° | 36.6° |
| H1' | C1' | C2' | H2'A | 150.3° | 160.2° |
| H10 | C10 | C11 | H11 | 1.9° | 0.1° |
| H11 | C11 | C12 | H12 | 0.5° | 0.1° |
| H12 | C12 | C13 | H13 | 1.2° | 0.1° |
| H2' | C2' | C3' | H3' | 88.5° | 102.2° |
| H2'A | C2' | C3' | H3' | 33.5° | 21.5° |
| H3' | C3' | O3' | HO3' | 57.4° | 61.1° |
| H3' | C3' | C4' | H4' | 89.6° | 123.9° |
| H4' | C4' | C5' | H5' | 95.4° | 66.1° |
| H4' | C4' | C5' | H5'A | 145.4° | 173.9° |
