T0N

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C4	doub	1.22Å	1.23Å
C4	N3	sing	1.35Å	1.38Å
C4	C5	sing	1.42Å	1.46Å
C7	C5	sing	1.51Å	1.52Å
N3	C2	sing	1.35Å	1.37Å
C5	C6	doub	1.35Å	1.36Å
C2	O2	doub	1.22Å	1.23Å
C2	N1	sing	1.34Å	1.40Å
C6	N1	sing	1.37Å	1.38Å
N1	C1'	sing	1.47Å	1.49Å
C1'	O4'	sing	1.44Å	1.41Å
C1'	C2'	sing	1.55Å	1.53Å
O4'	C4'	sing	1.44Å	1.42Å
OP1	P	doub	1.48Å	1.48Å
C2'	C3'	sing	1.55Å	1.53Å
O5'	P	sing	1.61Å	1.61Å
O5'	C5'	sing	1.43Å	1.43Å
P	NP	sing	1.68Å	1.58Å
C4'	C5'	sing	1.53Å	1.54Å
C4'	C3'	sing	1.54Å	1.54Å
C3'	O3'	sing	1.43Å	1.43Å
C33	NC2	sing	1.47Å	1.48Å
NP	CN	sing	1.47Å	1.38Å
NC2	CN	sing	1.48Å	1.41Å
NC2	C34	sing	1.49Å	1.47Å
CN	NC1	sing	1.48Å	1.40Å
C34	C31	sing	1.55Å	1.53Å
NC1	C31	sing	1.48Å	1.47Å
NC1	C32	sing	1.47Å	1.48Å
C6	H6	sing	1.08Å	1.08Å
N3	H3	sing	0.97Å	1.00Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2''	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C7	H73	sing	1.09Å	1.10Å
C7	H72	sing	1.09Å	1.10Å
C7	H71	sing	1.09Å	1.10Å
CN	H5	sing	1.09Å	1.10Å
C31	H12	sing	1.09Å	1.10Å
C31	H11	sing	1.09Å	1.10Å
C32	H23	sing	1.09Å	1.10Å
C32	H21	sing	1.09Å	1.10Å
C32	H22	sing	1.09Å	1.10Å
C33	H33	sing	1.09Å	1.10Å
C33	H31	sing	1.09Å	1.10Å
C33	H32	sing	1.09Å	1.10Å
C34	H42	sing	1.09Å	1.10Å
C34	H41	sing	1.09Å	1.10Å
P	OP3	sing	1.61Å	15.21Å
OP3	HOP3	sing	0.97Å	0.00Å
NP	HNP	sing	1.01Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O4	C4	N3	118.5°	120.3°
O4	C4	C5	126.5°	120.3°
N3	C4	C5	114.9°	119.4°
C4	N3	C2	125.8°	120.2°
C4	N3	H3	117.1°	119.9°
C4	C5	C7	120.2°	120.5°
C4	C5	C6	120.4°	119.1°
C7	C5	C6	119.4°	120.5°
C5	C7	H73	109.5°	109.5°
C5	C7	H72	109.5°	109.5°
C5	C7	H71	109.5°	109.5°
N3	C2	O2	119.1°	119.5°
N3	C2	N1	116.8°	120.9°
C2	N3	H3	117.1°	119.9°
C5	C6	N1	121.2°	119.7°
C5	C6	H6	119.4°	120.1°
O2	C2	N1	124.1°	119.5°
C2	N1	C6	120.8°	120.7°
C2	N1	C1'	118.5°	119.7°
C6	N1	C1'	120.7°	119.6°
N1	C6	H6	119.4°	120.2°
N1	C1'	O4'	110.5°	110.4°
N1	C1'	C2'	113.7°	110.4°
N1	C1'	H1'	108.7°	110.4°
O4'	C1'	C2'	105.8°	104.8°
C1'	O4'	C4'	108.4°	105.3°
O4'	C1'	H1'	109.8°	110.4°
C1'	C2'	C3'	101.4°	104.0°
C2'	C1'	H1'	108.2°	110.5°
C1'	C2'	H2'	111.4°	110.5°
C1'	C2'	H2''	111.4°	110.5°
O4'	C4'	C5'	109.7°	110.4°
O4'	C4'	C3'	108.1°	104.8°
O4'	C4'	H4'	109.7°	110.4°
OP1	P	O5'	104.6°	109.5°
OP1	P	NP	112.6°	109.4°
OP1	P	OP3	98.6°	109.5°
C2'	C3'	C4'	102.8°	104.1°
C2'	C3'	O3'	112.7°	110.5°
C3'	C2'	H2'	111.4°	110.5°
C3'	C2'	H2''	111.4°	110.5°
C2'	C3'	H3'	109.8°	110.5°
P	O5'	C5'	122.2°	123.0°
O5'	P	NP	112.1°	109.5°
O5'	P	OP3	70.9°	109.5°
O5'	C5'	C4'	113.0°	109.5°
O5'	C5'	H5'	108.6°	109.5°
O5'	C5'	H5''	108.6°	109.5°
P	NP	CN	113.1°	111.0°
NP	P	OP3	145.8°	109.5°
P	NP	HNP	108.5°	111.0°
C5'	C4'	C3'	113.0°	110.4°
C5'	C4'	H4'	108.2°	110.3°
C4'	C5'	H5'	108.6°	109.5°
C4'	C5'	H5''	108.6°	109.5°
C4'	C3'	O3'	110.3°	110.5°
C4'	C3'	H3'	109.6°	110.6°
C3'	C4'	H4'	108.1°	110.5°
O3'	C3'	H3'	111.2°	110.4°
C3'	O3'	HO3'	109.5°	114.0°
C33	NC2	CN	123.6°	111.0°
C33	NC2	C34	115.9°	111.0°
NC2	C33	H33	109.5°	109.5°
NC2	C33	H31	109.5°	109.4°
NC2	C33	H32	109.5°	109.5°
NP	CN	NC2	123.0°	109.8°
NP	CN	NC1	120.6°	109.8°
NP	CN	H5	99.4°	109.8°
CN	NP	HNP	108.6°	111.0°
CN	NC2	C34	110.6°	104.5°
NC2	CN	NC1	108.5°	107.9°
NC2	CN	H5	99.3°	109.8°
NC2	C34	C31	104.9°	102.2°
NC2	C34	H42	110.6°	110.9°
NC2	C34	H41	110.6°	110.9°
CN	NC1	C31	111.6°	107.0°
CN	NC1	C32	124.6°	111.0°
NC1	CN	H5	99.3°	109.8°
C34	C31	NC1	104.2°	103.5°
C34	C31	H12	110.8°	110.6°
C34	C31	H11	110.8°	110.7°
C31	C34	H42	110.6°	110.8°
C31	C34	H41	110.6°	110.9°
C31	NC1	C32	118.3°	111.0°
NC1	C31	H12	110.8°	110.7°
NC1	C31	H11	110.8°	110.6°
NC1	C32	H23	109.5°	109.4°
NC1	C32	H21	109.5°	109.5°
NC1	C32	H22	109.5°	109.5°
H2'	C2'	H2''	109.5°	110.6°
H5'	C5'	H5''	109.5°	109.4°
H73	C7	H72	109.5°	109.4°
H73	C7	H71	109.4°	109.5°
H72	C7	H71	109.5°	109.4°
H12	C31	H11	109.4°	110.6°
H23	C32	H21	109.5°	109.5°
H23	C32	H22	109.5°	109.5°
H21	C32	H22	109.5°	109.5°
H33	C33	H31	109.4°	109.5°
H33	C33	H32	109.5°	109.5°
H31	C33	H32	109.5°	109.5°
H42	C34	H41	109.5°	110.9°
P	OP3	HOP3	90.0°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C4	N3	C5	179.1°	180.0°
O4	C4	C5	C7	2.7°	0.0°
O4	C4	N3	C2	177.8°	179.9°
O4	C4	C5	C6	177.1°	180.0°
O4	C4	N3	H3	2.2°	0.1°
N3	C4	C5	C7	178.3°	180.0°
C4	N3	C2	H3	180.0°	179.9°
N3	C4	C5	C6	1.9°	0.0°
C4	N3	C2	O2	179.0°	180.0°
C4	N3	C2	N1	0.8°	0.1°
C4	C5	C7	C6	179.9°	180.0°
C5	C4	N3	C2	1.2°	0.1°
C4	C5	C6	N1	0.4°	0.0°
C4	C5	C6	H6	179.6°	179.7°
C5	C4	N3	H3	178.8°	179.9°
C4	C5	C7	H73	180.0°	90.0°
C4	C5	C7	H72	60.0°	30.0°
C4	C5	C7	H71	60.0°	150.0°
C7	C5	C6	N1	179.8°	180.0°
C7	C5	C6	H6	0.3°	0.3°
C5	C7	H73	H72	120.0°	120.0°
C5	C7	H73	H71	120.0°	120.1°
C5	C7	H72	H71	120.0°	120.0°
N3	C2	O2	N1	179.8°	179.9°
N3	C2	N1	C6	2.4°	0.1°
N3	C2	N1	C1'	177.6°	179.7°
C5	C6	N1	C2	1.9°	0.0°
C5	C6	N1	H6	180.0°	179.7°
C5	C6	N1	C1'	178.1°	179.8°
C6	C5	C7	H73	0.1°	90.0°
C6	C5	C7	H72	120.2°	150.0°
C6	C5	C7	H71	119.9°	30.0°
O2	C2	N1	C6	177.4°	180.0°
O2	C2	N1	C1'	2.7°	0.2°
O2	C2	N3	H3	1.0°	0.1°
C2	N1	C6	C1'	180.0°	179.8°
C2	N1	C1'	O4'	114.2°	53.3°
C2	N1	C1'	C2'	127.0°	62.1°
C2	N1	C6	H6	178.2°	179.7°
N1	C2	N3	H3	179.2°	180.0°
C2	N1	C1'	H1'	6.3°	175.6°
C6	N1	C1'	O4'	65.8°	126.5°
C6	N1	C1'	C2'	53.0°	118.2°
C6	N1	C1'	H1'	173.7°	4.2°
N1	C1'	O4'	C2'	123.5°	118.8°
N1	C1'	O4'	H1'	119.9°	122.3°
N1	C1'	C2'	H1'	121.0°	122.3°
N1	C1'	O4'	C4'	153.5°	159.3°
N1	C1'	C2'	C3'	158.8°	142.8°
C1'	N1	C6	H6	1.8°	0.1°
N1	C1'	C2'	H2'	82.5°	98.6°
N1	C1'	C2'	H2''	40.1°	24.2°
O4'	C1'	C2'	H1'	117.6°	118.9°
O4'	C1'	C2'	C3'	37.4°	24.0°
C1'	O4'	C4'	C5'	133.8°	159.4°
C1'	O4'	C4'	C3'	10.1°	40.5°
O4'	C1'	C2'	H2'	156.0°	142.6°
O4'	C1'	C2'	H2''	81.3°	94.6°
C1'	O4'	C4'	H4'	107.6°	78.4°
C2'	C1'	O4'	C4'	30.0°	40.5°
C1'	C2'	C3'	H2'	118.7°	118.6°
C1'	C2'	C3'	H2''	118.7°	118.6°
C1'	C2'	C3'	C4'	29.7°	0.0°
C1'	C2'	C3'	O3'	89.1°	118.7°
C1'	C2'	H2'	H2''	123.8°	122.7°
C1'	C2'	C3'	H3'	146.3°	118.8°
O4'	C4'	C3'	C2'	13.5°	24.0°
O4'	C4'	C5'	O5'	61.9°	66.5°
O4'	C4'	C5'	C3'	120.7°	115.4°
O4'	C4'	C5'	H4'	119.6°	122.3°
O4'	C4'	C3'	H4'	118.7°	118.9°
O4'	C4'	C3'	O3'	106.9°	142.6°
C4'	O4'	C1'	H1'	86.6°	78.4°
O4'	C4'	C3'	H3'	130.3°	94.7°
O4'	C4'	C5'	H5'	177.6°	173.5°
O4'	C4'	C5'	H5''	58.6°	53.5°
OP1	P	O5'	NP	122.3°	120.0°
OP1	P	O5'	OP3	94.2°	120.0°
OP1	P	O5'	C5'	175.8°	50.0°
OP1	P	NP	OP3	154.1°	120.0°
OP1	P	NP	CN	156.8°	180.0°
OP1	P	OP3	HOP3	90.0°	180.0°
OP1	P	NP	HNP	82.7°	56.0°
C2'	C3'	C4'	C5'	108.1°	142.8°
C2'	C3'	C4'	O3'	120.4°	118.6°
C2'	C3'	C4'	H3'	116.7°	118.7°
C2'	C3'	O3'	H3'	123.9°	122.6°
C3'	C2'	C1'	H1'	80.3°	94.9°
C3'	C2'	H2'	H2''	123.7°	122.7°
C2'	C3'	O3'	HO3'	180.0°	61.4°
C2'	C3'	C4'	H4'	132.2°	94.9°
O5'	P	NP	OP3	88.2°	120.0°
P	O5'	C5'	C4'	176.5°	180.0°
O5'	P	NP	CN	85.6°	60.0°
P	O5'	C5'	H5'	56.0°	60.0°
P	O5'	C5'	H5''	62.9°	59.9°
O5'	P	OP3	HOP3	90.0°	60.0°
O5'	P	NP	HNP	35.0°	64.0°
C5'	O5'	P	NP	53.5°	70.0°
O5'	C5'	C4'	H5'	120.5°	120.0°
O5'	C5'	C4'	H5''	120.5°	120.0°
O5'	C5'	C4'	C3'	58.8°	178.2°
O5'	C5'	C4'	H4'	178.5°	55.8°
O5'	C5'	H5'	H5''	118.4°	119.9°
C5'	O5'	P	OP3	90.0°	170.0°
P	NP	CN	HNP	120.5°	124.0°
P	NP	CN	NC2	80.1°	83.7°
P	NP	CN	NC1	134.3°	157.8°
P	NP	CN	H5	27.5°	37.1°
NP	P	OP3	HOP3	90.0°	60.0°
C5'	C4'	C3'	H4'	119.7°	122.3°
C5'	C4'	C3'	O3'	131.5°	98.5°
C5'	C4'	C3'	H3'	8.7°	24.1°
C4'	C5'	H5'	H5''	118.4°	120.0°
C4'	C3'	O3'	H3'	121.9°	122.7°
C4'	C3'	C2'	H2'	148.4°	118.6°
C4'	C3'	C2'	H2''	89.0°	118.6°
C4'	C3'	O3'	HO3'	65.8°	176.1°
C3'	C4'	C5'	H5'	61.7°	58.1°
C3'	C4'	C5'	H5''	179.3°	61.8°
O3'	C3'	C2'	H2'	29.6°	0.1°
O3'	C3'	C2'	H2''	152.2°	122.7°
O3'	C3'	C4'	H4'	11.8°	23.7°
C33	NC2	CN	NP	9.5°	23.9°
C33	NC2	CN	C34	144.2°	119.8°
C33	NC2	CN	NC1	139.6°	95.7°
C33	NC2	C34	C31	143.0°	82.9°
C33	NC2	CN	H5	117.2°	144.7°
NC2	C33	H33	H31	120.0°	119.9°
NC2	C33	H33	H32	120.0°	120.0°
NC2	C33	H31	H32	120.0°	120.0°
C33	NC2	C34	H42	23.7°	35.3°
C33	NC2	C34	H41	97.8°	159.0°
NP	CN	NC2	NC1	149.1°	119.6°
NP	CN	NC2	H5	107.7°	120.8°
NP	CN	NC2	C34	153.7°	143.6°
NP	CN	NC1	H5	106.9°	120.8°
NP	CN	NC1	C31	153.0°	120.0°
NP	CN	NC1	C32	0.2°	1.3°
CN	NP	P	OP3	2.6°	60.0°
NC2	CN	NC1	H5	103.1°	119.6°
CN	NC2	C34	C31	4.2°	36.9°
NC2	CN	NC1	C31	3.0°	0.3°
NC2	CN	NC1	C32	150.2°	120.9°
CN	NC2	C33	H33	180.0°	60.0°
CN	NC2	C33	H31	60.0°	180.0°
CN	NC2	C33	H32	60.0°	60.0°
CN	NC2	C34	H42	123.5°	155.0°
CN	NC2	C34	H41	115.0°	81.3°
NC2	CN	NP	HNP	159.3°	152.3°
C34	NC2	CN	NC1	4.6°	24.0°
NC2	C34	C31	H42	119.3°	118.2°
NC2	C34	C31	H41	119.3°	118.3°
NC2	C34	C31	NC1	2.3°	36.6°
C34	NC2	CN	H5	98.6°	95.6°
NC2	C34	C31	H12	116.9°	155.1°
NC2	C34	C31	H11	121.4°	82.0°
C34	NC2	C33	H33	37.5°	175.8°
C34	NC2	C33	H31	82.5°	64.2°
C34	NC2	C33	H32	157.5°	55.9°
NC2	C34	H42	H41	122.1°	123.7°
CN	NC1	C31	C34	0.3°	22.4°
CN	NC1	C31	C32	155.1°	121.3°
CN	NC1	C31	H12	119.5°	140.9°
CN	NC1	C31	H11	118.8°	96.3°
CN	NC1	C32	H23	180.0°	53.1°
CN	NC1	C32	H21	60.0°	173.1°
CN	NC1	C32	H22	60.0°	66.9°
NC1	CN	NP	HNP	13.8°	33.8°
C34	C31	NC1	H12	119.2°	118.5°
C34	C31	NC1	H11	119.2°	118.6°
C34	C31	NC1	C32	154.8°	143.6°
C34	C31	H12	H11	122.4°	123.0°
C31	C34	H42	H41	122.1°	123.6°
C31	NC1	CN	H5	100.1°	119.3°
NC1	C31	H12	H11	122.4°	122.9°
C31	NC1	C32	H23	28.4°	65.8°
C31	NC1	C32	H21	148.4°	54.2°
C31	NC1	C32	H22	91.6°	174.2°
NC1	C31	C34	H42	121.6°	154.8°
NC1	C31	C34	H41	117.0°	81.7°
C32	NC1	CN	H5	106.6°	119.5°
C32	NC1	C31	H12	35.6°	97.9°
C32	NC1	C31	H11	86.1°	25.0°
NC1	C32	H23	H21	120.0°	120.0°
NC1	C32	H23	H22	120.0°	120.0°
NC1	C32	H21	H22	120.0°	120.0°
H1'	C1'	C2'	H2'	38.4°	23.7°
H1'	C1'	C2'	H2''	161.1°	146.5°
H2'	C2'	C3'	H3'	95.0°	122.6°
H2''	C2'	C3'	H3'	27.6°	0.2°
H3'	C3'	O3'	HO3'	56.1°	61.1°
H3'	C3'	C4'	H4'	111.1°	146.4°
H4'	C4'	C5'	H5'	57.9°	64.2°
H4'	C4'	C5'	H5''	61.0°	175.8°
H73	C7	H72	H71	120.0°	120.0°
H5	CN	NP	HNP	93.0°	86.9°
H12	C31	C34	H42	2.4°	86.7°
H12	C31	C34	H41	123.8°	36.9°
H11	C31	C34	H42	119.3°	36.2°
H11	C31	C34	H41	2.2°	159.8°
H23	C32	H21	H22	120.0°	120.0°
H33	C33	H31	H32	120.0°	120.1°
OP3	P	NP	HNP	123.2°	176.0°

Release date:	2021-01-13
Definition date:	2020-12-09
Last modified:	2023-08-15
Release status:	REL
Processing site:	PDBE
Derived from:	7B72