Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

SYZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C10doub1.21Å1.21Å
CC1sing1.51Å1.48Å
C10C11sing1.51Å1.50Å
C10N1sing1.32Å1.43Å
C1C2doub1.38Å1.36ÅAromatic
C1C6sing1.38Å1.37ÅAromatic
C11Ssing1.83Å1.81Å
C2C3sing1.38Å1.38ÅAromatic
C6C5doub1.40Å1.40ÅAromatic
C9N1sing1.46Å1.50Å
C9C8sing1.53Å1.57Å
N1C12sing1.34Å1.42Å
C3C4doub1.38Å1.39ÅAromatic
NC8sing1.47Å1.46Å
NC7sing1.35Å1.39Å
C5C4sing1.40Å1.39ÅAromatic
C5C7sing1.48Å1.49Å
C7Odoub1.22Å1.20Å
SC12sing1.77Å1.79Å
C12O2doub1.22Å1.20Å
C4H1sing1.08Å1.08Å
C6H2sing1.08Å1.08Å
C8H3sing1.09Å1.10Å
C8H4sing1.09Å1.10Å
C11H5sing1.09Å1.10Å
C9H6sing1.09Å1.10Å
C9H7sing1.09Å1.10Å
NH8sing0.97Å1.00Å
C3H9sing1.08Å1.08Å
C2H10sing1.08Å1.08Å
CH11sing1.09Å1.10Å
CH12sing1.09Å1.10Å
CH13sing1.09Å1.10Å
C11H14sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C10C11124.3°123.1°
O1C10N1123.5°123.1°
CC1C2120.3°119.9°
CC1C6119.7°120.0°
C1CH11109.5°109.5°
C1CH12109.5°109.5°
C1CH13109.5°109.5°
C11C10N1112.2°113.8°
C10C11S108.4°103.0°
C10C11H5109.7°110.7°
C10C11H14109.7°110.7°
C10N1C9122.5°119.4°
C10N1C12115.7°121.3°
C2C1C6120.1°120.1°
C1C2C3121.0°120.3°
C1C2H10119.5°119.9°
C1C6C5120.0°119.9°
C1C6H2120.0°120.1°
C11SC1293.2°94.3°
SC11H5109.7°110.7°
SC11H14109.8°110.7°
C2C3C4120.4°120.1°
C2C3H9119.8°119.9°
C3C2H10119.5°119.8°
C6C5C4120.0°119.7°
C6C5C7122.3°120.2°
C5C6H2120.0°120.0°
N1C9C8114.1°109.5°
C9N1C12121.8°119.3°
N1C9H6108.3°109.5°
N1C9H7108.3°109.5°
C9C8N108.3°109.4°
C9C8H3109.8°109.5°
C9C8H4109.8°109.5°
C8C9H6108.3°109.5°
C8C9H7108.3°109.5°
N1C12S110.3°107.7°
N1C12O2125.0°126.2°
C3C4C5118.6°119.8°
C3C4H1120.7°120.0°
C4C3H9119.8°119.9°
C8NC7123.4°119.9°
NC8H3109.8°109.5°
NC8H4109.7°109.4°
C8NH8118.3°120.1°
NC7C5116.8°120.0°
NC7O121.4°120.1°
C7NH8118.3°120.0°
C4C5C7117.8°120.1°
C5C4H1120.7°120.1°
C5C7O121.8°120.0°
SC12O2124.6°126.2°
H3C8H4109.5°109.5°
H5C11H14109.5°110.8°
H6C9H7109.5°109.5°
H11CH12109.5°109.5°
H11CH13109.4°109.4°
H12CH13109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C10C11N1178.6°180.0°
O1C10C11S173.9°180.0°
O1C10N1C93.9°0.3°
O1C10N1C12174.4°180.0°
O1C10C11H554.1°61.6°
O1C10C11H1466.2°61.6°
CC1C2C6179.4°179.9°
CC1C2C3178.8°180.0°
CC1C6C5178.5°180.0°
CC1C6H21.5°0.1°
CC1C2H101.2°0.1°
C1CH11H12120.0°120.0°
C1CH11H13120.0°120.0°
C1CH12H13120.0°120.0°
C10C11SH5119.8°118.3°
C10C11SH14119.8°118.4°
C11C10N1C9177.4°179.7°
C11C10N1C124.3°0.0°
C10C11SC123.2°0.0°
C10C11H5H14120.5°123.2°
N1C10C11S4.7°0.0°
C10N1C9C12178.2°179.7°
C10N1C9C8123.7°89.8°
C10N1C12S1.7°0.0°
C10N1C12O2178.7°180.0°
N1C10C11H5124.5°118.4°
C10N1C9H6115.6°30.3°
C10N1C9H73.0°150.3°
N1C10C11H14115.2°118.4°
C1C2C3H10180.0°179.9°
C2C1C6C50.9°0.1°
C1C2C3C40.2°0.1°
C2C1C6H2179.1°179.8°
C1C2C3H9179.9°180.0°
C2C1CH1190.3°89.9°
C2C1CH12149.7°150.1°
C2C1CH1329.7°30.0°
C6C1C2C30.6°0.2°
C1C6C5H2180.0°179.9°
C1C6C5C40.4°0.1°
C1C6C5C7179.8°180.0°
C6C1C2H10179.4°179.7°
C6C1CH1190.3°90.2°
C6C1CH1229.7°29.8°
C6C1CH13149.7°149.8°
C11SC12N11.0°0.1°
C11SC12O2178.6°180.0°
SC11H5H14120.5°123.3°
C2C3C4H9180.0°180.0°
C2C3C4C50.6°0.3°
C2C3C4H1179.4°180.0°
C6C5C4C30.3°0.3°
C6C5C7N20.0°179.9°
C6C5C4C7179.4°179.9°
C6C5C7O161.3°0.0°
C6C5C4H1179.7°180.0°
N1C9C8H6120.7°120.0°
N1C9C8H7120.7°120.0°
N1C9C8N179.5°180.0°
C9N1C12S180.0°179.7°
C9N1C12O20.4°0.4°
N1C9C8H359.7°60.0°
N1C9C8H460.6°60.1°
N1C9H6H7117.8°120.0°
C8C9N1C1254.5°89.9°
C9C8NH3119.8°120.0°
C9C8NH4119.8°119.9°
C9C8NC7174.7°180.0°
C9C8H3H4120.5°120.0°
C8C9H6H7117.9°120.0°
C9C8NH85.3°0.0°
N1C12SO2179.5°179.9°
C12N1C9H666.2°150.0°
C12N1C9H7175.2°30.0°
C3C4C5H1180.0°179.7°
C3C4C5C7179.1°179.8°
C4C3C2H10179.8°180.0°
C8NC7H8180.0°180.0°
C8NC7C5179.5°180.0°
C8NC7O1.9°0.1°
NC8H3H4120.5°120.0°
NC8C9H659.8°60.0°
NC8C9H758.9°60.0°
NC7C5C4160.6°0.0°
NC7C5O178.7°179.9°
C7NC8H365.4°60.0°
C7NC8H454.9°60.0°
C4C5C7O18.1°179.9°
C4C5C6H2179.6°180.0°
C5C4C3H9179.4°179.7°
C7C5C4H10.9°0.0°
C7C5C6H20.2°0.1°
C5C7NH80.5°0.0°
OC7NH8178.1°179.9°
C12SC11H5123.0°118.4°
C12SC11H14116.7°118.3°
H1C4C3H90.6°0.0°
H3C8C9H6179.6°180.0°
H3C8C9H761.0°60.0°
H3C8NH8114.6°120.0°
H4C8C9H660.1°59.9°
H4C8C9H7178.7°179.9°
H4C8NH8125.1°120.0°
H9C3C2H100.2°0.1°
H11CH12H13120.0°120.0°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon