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SYV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C4sing1.40Å1.38Å
C4C3doub1.39Å1.40ÅAromatic
C4C5sing1.39Å1.39ÅAromatic
C3C2sing1.38Å1.37ÅAromatic
C5C6doub1.39Å1.36ÅAromatic
C2C1doub1.39Å1.37ÅAromatic
C6C1sing1.40Å1.37ÅAromatic
C6Osing1.36Å1.36Å
C1Nsing1.40Å1.36Å
OC7sing1.34Å1.37Å
NC7sing1.35Å1.35Å
NCsing1.46Å1.45Å
C7O1doub1.22Å1.19Å
C5H1sing1.08Å1.08Å
N1H2sing0.97Å1.00Å
N1H3sing0.97Å1.00Å
CH4sing1.09Å1.10Å
CH5sing1.09Å1.10Å
CH6sing1.09Å1.10Å
C3H7sing1.08Å1.08Å
C2H8sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1C4C3120.1°120.0°
N1C4C5120.2°119.9°
C4N1H2109.5°120.0°
C4N1H3109.5°120.0°
C3C4C5119.4°120.1°
C4C3C2121.2°120.1°
C4C3H7119.4°119.9°
C4C5C6118.2°119.8°
C4C5H1121.0°120.1°
C3C2C1118.3°119.9°
C2C3H7119.4°120.0°
C3C2H8120.8°120.0°
C5C6C1121.7°119.8°
C5C6O128.7°132.9°
C6C5H1120.9°120.1°
C2C1C6121.1°120.2°
C2C1N132.9°133.2°
C1C2H8120.8°120.1°
C1C6O109.5°107.3°
C6C1N106.1°106.6°
C6OC7107.2°109.3°
C1NC7109.5°107.4°
C1NC122.2°126.3°
OC7N107.8°109.5°
OC7O1122.3°125.3°
C7NC128.3°126.3°
NC7O1129.7°125.2°
NCH4109.5°109.5°
NCH5109.4°109.4°
NCH6109.4°109.5°
H2N1H3109.4°120.0°
H4CH5109.5°109.4°
H4CH6109.5°109.5°
H5CH6109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C4C3C5173.7°179.7°
N1C4C3C2170.2°179.7°
N1C4C5C6172.7°179.7°
N1C4C5H17.3°0.2°
C4N1H2H3120.0°180.0°
N1C4C3H79.8°0.3°
C4C3C2H7180.0°179.9°
C3C4C5C61.0°0.0°
C4C3C2C12.6°0.0°
C3C4C5H1179.0°180.0°
C3C4N1H2180.0°0.0°
C3C4N1H360.0°180.0°
C4C3C2H8177.4°180.0°
C5C4C3C23.6°0.0°
C4C5C6H1180.0°180.0°
C4C5C6C12.4°0.0°
C4C5C6O177.7°180.0°
C5C4N1H26.3°179.7°
C5C4N1H3126.3°0.2°
C5C4C3H7176.4°179.9°
C3C2C1H8180.0°180.0°
C3C2C1C60.8°0.0°
C3C2C1N177.6°180.0°
C5C6C1C23.4°0.0°
C5C6C1O176.2°180.0°
C5C6C1N175.4°180.0°
C5C6OC7174.5°180.0°
C2C1C6N178.8°180.0°
C2C1C6O179.6°180.0°
C2C1NC7178.5°180.0°
C2C1NC1.8°0.0°
C1C2C3H7177.4°179.9°
C1C6OC71.3°0.0°
C6C1NC70.0°0.0°
C6C1NC179.7°180.0°
C1C6C5H1177.6°180.0°
C6C1C2H8179.2°180.0°
OC6C1N0.8°0.0°
C6OC7N1.3°0.0°
C6OC7O1173.5°180.0°
OC6C5H12.3°0.1°
C1NC7O0.8°0.0°
C1NC7C179.7°180.0°
C1NC7O1173.4°179.9°
C1NCH4180.0°180.0°
C1NCH560.0°60.1°
C1NCH660.0°60.0°
NC1C2H82.4°0.0°
OC7NO1174.3°180.0°
OC7NC178.8°180.0°
C7NCH40.4°0.0°
C7NCH5120.4°120.0°
C7NCH6119.6°120.0°
CNC7O16.9°0.0°
NCH4H5120.0°119.9°
NCH4H6120.0°120.0°
NCH5H6120.0°120.0°
H4CH5H6120.0°120.0°
H7C3C2H82.6°0.0°

223166

PDB entries from 2024-07-31

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