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Summary Geometry Related PDB entries

SYC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	N2	doub	1.32Å	1.34Å	Aromatic
C1	C6	sing	1.38Å	1.38Å	Aromatic
N2	C3	sing	1.32Å	1.35Å	Aromatic
C3	C4	doub	1.38Å	1.41Å	Aromatic
C3	C11	sing	1.51Å	1.49Å
C4	C5	sing	1.39Å	1.39Å	Aromatic
C5	C6	doub	1.39Å	1.40Å	Aromatic
C11	P12	sing	1.82Å	1.84Å
P12	O15	doub	1.48Å	1.54Å
P12	O16	sing	1.61Å	1.61Å
P12	O17	sing	1.61Å	1.57Å
C1	H1	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C11	H11	sing	1.09Å	1.10Å
C11	H11A	sing	1.09Å	1.10Å
O16	HO16	sing	0.97Å	0.95Å
O17	HO17	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N2	C1	C6	119.6°	120.8°
C1	N2	C3	121.3°	121.7°
N2	C1	H1	120.2°	119.6°
C1	C6	C5	120.7°	119.1°
C6	C1	H1	120.2°	119.6°
C1	C6	H6	119.7°	120.4°
N2	C3	C4	121.8°	120.8°
N2	C3	C11	118.3°	119.6°
C4	C3	C11	119.9°	119.6°
C3	C4	C5	117.0°	119.1°
C3	C4	H4	121.5°	120.4°
C3	C11	P12	112.5°	109.4°
C3	C11	H11	108.5°	109.5°
C3	C11	H11A	108.5°	109.5°
C4	C5	C6	119.5°	118.4°
C5	C4	H4	121.5°	120.5°
C4	C5	H5	120.2°	120.8°
C6	C5	H5	120.3°	120.8°
C5	C6	H6	119.6°	120.4°
C11	P12	O15	109.9°	109.5°
C11	P12	O16	107.8°	109.5°
C11	P12	O17	115.7°	109.4°
P12	C11	H11	108.5°	109.5°
P12	C11	H11A	108.5°	109.5°
O15	P12	O16	109.8°	109.5°
O15	P12	O17	114.6°	109.4°
O16	P12	O17	98.2°	109.5°
P12	O16	HO16	109.5°	114.0°
P12	O17	HO17	109.5°	114.0°
H11	C11	H11A	110.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N2	C1	C6	H1	180.0°	179.7°
C1	N2	C3	C4	2.5°	0.0°
C1	N2	C3	C11	178.6°	180.0°
N2	C1	C6	C5	0.4°	0.0°
N2	C1	C6	H6	179.6°	180.0°
C6	C1	N2	C3	1.4°	0.0°
C1	C6	C5	C4	0.9°	0.1°
C1	C6	C5	H6	180.0°	180.0°
C1	C6	C5	H5	179.1°	180.0°
N2	C3	C4	C11	178.9°	179.9°
N2	C3	C4	C5	1.9°	0.0°
N2	C3	C11	P12	102.6°	90.0°
C3	N2	C1	H1	178.6°	179.7°
N2	C3	C4	H4	178.1°	179.9°
N2	C3	C11	H11	137.3°	150.0°
N2	C3	C11	H11A	17.4°	30.0°
C3	C4	C5	H4	180.0°	180.0°
C3	C4	C5	C6	0.2°	0.0°
C4	C3	C11	P12	78.4°	90.0°
C3	C4	C5	H5	179.8°	180.0°
C4	C3	C11	H11	41.6°	30.0°
C4	C3	C11	H11A	161.6°	150.0°
C11	C3	C4	C5	179.2°	180.0°
C3	C11	P12	H11	120.0°	120.0°
C3	C11	P12	H11A	120.0°	120.0°
C3	C11	P12	O15	175.9°	55.0°
C3	C11	P12	O16	56.2°	65.0°
C3	C11	P12	O17	52.5°	175.0°
C11	C3	C4	H4	0.7°	0.0°
C3	C11	H11	H11A	118.8°	120.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.1°	180.0°
C5	C6	C1	H1	179.6°	179.8°
C6	C5	C4	H4	179.8°	180.0°
C11	P12	O15	O16	118.5°	120.0°
C11	P12	O15	O17	132.2°	119.9°
C11	P12	O16	O17	120.4°	120.0°
P12	C11	H11	H11A	118.7°	120.0°
C11	P12	O16	HO16	119.8°	60.0°
C11	P12	O17	HO17	129.4°	179.9°
O15	P12	O16	O17	119.9°	120.0°
O15	P12	C11	H11	55.8°	175.0°
O15	P12	C11	H11A	64.1°	65.0°
O15	P12	O16	HO16	0.0°	180.0°
O15	P12	O17	HO17	0.0°	60.1°
O16	P12	C11	H11	63.8°	55.0°
O16	P12	C11	H11A	176.2°	175.0°
O16	P12	O17	HO17	116.2°	59.9°
O17	P12	C11	H11	172.5°	65.0°
O17	P12	C11	H11A	67.5°	54.9°
O17	P12	O16	HO16	119.8°	60.0°
H1	C1	C6	H6	0.4°	0.3°
H4	C4	C5	H5	0.2°	0.0°
H5	C5	C6	H6	0.9°	0.0°

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