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SY3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CC1sing1.51Å1.51Å
C1C2doub1.38Å1.39ÅAromatic
C1C6sing1.39Å1.41ÅAromatic
C2C3sing1.38Å1.38ÅAromatic
C10C9doub1.38Å1.38ÅAromatic
C10N1sing1.32Å1.34ÅAromatic
C9C8sing1.40Å1.39ÅAromatic
NC6sing1.40Å1.41Å
NC7sing1.35Å1.35Å
C6C5doub1.39Å1.39ÅAromatic
C3C4doub1.39Å1.37ÅAromatic
N1C11doub1.32Å1.34ÅAromatic
C8C7sing1.48Å1.49Å
C8C12doub1.40Å1.39ÅAromatic
C7Odoub1.21Å1.23Å
C5C4sing1.38Å1.37ÅAromatic
C4Fsing1.35Å1.36Å
C11C12sing1.38Å1.38ÅAromatic
C5H1sing1.08Å1.08Å
C10H2sing1.08Å1.08Å
NH3sing0.97Å1.00Å
CH4sing1.09Å1.10Å
CH5sing1.09Å1.10Å
CH6sing1.09Å1.10Å
C11H7sing1.08Å1.08Å
C12H8sing1.08Å1.08Å
C2H9sing1.08Å1.08Å
C3H10sing1.08Å1.08Å
C9H11sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CC1C2120.4°120.0°
CC1C6121.8°120.0°
C1CH4109.5°109.5°
C1CH5109.5°109.5°
C1CH6109.5°109.5°
C2C1C6117.7°120.0°
C1C2C3121.9°120.1°
C1C2H9119.0°120.0°
C1C6N119.4°120.1°
C1C6C5120.9°119.8°
C2C3C4118.2°120.1°
C3C2H9119.1°119.9°
C2C3H10120.9°120.0°
C9C10N1123.7°120.8°
C10C9C8118.8°119.0°
C9C10H2118.1°119.6°
C10C9H11120.6°120.5°
C10N1C11116.9°122.1°
N1C10H2118.1°119.6°
C9C8C7121.7°120.9°
C9C8C12118.1°118.1°
C8C9H11120.6°120.5°
C6NC7124.0°120.0°
NC6C5119.6°120.1°
C6NH3118.0°120.0°
NC7C8116.0°120.0°
NC7O122.8°120.0°
C7NH3118.0°120.0°
C6C5C4118.2°119.9°
C6C5H1120.9°120.0°
C3C4C5123.1°120.0°
C3C4F118.7°120.0°
C4C3H10120.9°119.9°
N1C11C12123.7°120.9°
N1C11H7118.1°119.6°
C7C8C12120.2°120.9°
C8C7O121.2°120.0°
C8C12C11118.8°119.0°
C8C12H8120.6°120.5°
C5C4F118.2°120.0°
C4C5H1121.0°120.0°
C12C11H7118.2°119.5°
C11C12H8120.6°120.5°
H4CH5109.5°109.5°
H4CH6109.5°109.5°
H5CH6109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CC1C2C6177.7°179.9°
CC1C2C3176.3°179.7°
CC1C6N0.8°0.1°
CC1C6C5176.9°180.0°
C1CH4H5120.0°120.0°
C1CH4H6120.0°120.0°
C1CH5H6120.0°120.0°
CC1C2H93.7°0.0°
C1C2C3H9180.0°179.7°
C2C1C6N178.5°180.0°
C2C1C6C50.8°0.1°
C1C2C3C40.8°0.5°
C2C1CH488.8°90.0°
C2C1CH5151.2°150.0°
C2C1CH631.2°30.0°
C1C2C3H10179.2°180.0°
C6C1C2C31.5°0.2°
C1C6NC5177.7°179.9°
C1C6NC790.3°155.1°
C1C6C5C40.4°0.1°
C1C6C5H1179.5°180.0°
C1C6NH389.6°24.8°
C6C1CH488.8°90.1°
C6C1CH531.2°29.9°
C6C1CH6151.2°149.9°
C6C1C2H9178.6°179.9°
C2C3C4H10180.0°179.5°
C2C3C4C50.6°0.5°
C2C3C4F178.1°179.7°
C9C10N1H2180.0°180.0°
C10C9C8H11180.0°179.9°
C9C10N1C110.1°0.1°
C10C9C8C7178.8°179.9°
C10C9C8C120.1°0.1°
N1C10C9C80.1°0.1°
C10N1C11C120.0°0.0°
C10N1C11H7180.0°180.0°
N1C10C9H11179.9°180.0°
C9C8C7N59.9°0.0°
C9C8C7C12178.9°180.0°
C9C8C7O121.1°179.9°
C9C8C12C110.0°0.0°
C8C9C10H2179.9°180.0°
C9C8C12H8179.9°180.0°
C6NC7H3180.0°179.9°
C6NC7C8177.2°174.5°
C6NC7O1.7°5.4°
NC6C5C4177.2°180.0°
NC6C5H12.8°0.0°
C7NC6C587.4°25.0°
NC7C8O179.0°179.9°
NC7C8C12121.2°180.0°
C6C5C4C31.2°0.2°
C6C5C4H1180.0°180.0°
C6C5C4F177.5°179.9°
C5C6NH392.7°155.1°
C3C4C5F178.7°179.7°
C3C4C5H1178.8°179.7°
C4C3C2H9179.2°179.8°
N1C11C12C80.0°0.0°
N1C11C12H7180.0°180.0°
C11N1C10H2179.9°180.0°
N1C11C12H8180.0°180.0°
C7C8C12C11178.9°180.0°
C8C7NH32.8°5.6°
C7C8C12H81.1°0.1°
C7C8C9H111.1°0.1°
C12C8C7O57.8°0.1°
C8C12C11H8180.0°180.0°
C8C12C11H7180.0°180.0°
C12C8C9H11179.9°179.9°
OC7NH3178.2°174.5°
C5C4C3H10179.4°180.0°
FC4C5H12.5°0.0°
FC4C3H101.9°0.3°
H2C10C9H110.1°0.1°
H4CH5H6120.0°120.0°
H7C11C12H80.0°0.0°
H9C2C3H100.8°0.3°

223532

PDB entries from 2024-08-07

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