Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

SXZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C9C7sing1.53Å1.53Å
C10C7sing1.53Å1.53Å
C7C3sing1.53Å1.53Å
C3C1sing1.51Å1.52Å
C1O2doub1.21Å1.23Å
C1Nsing1.35Å1.34Å
NCAsing1.47Å1.46Å
OXTCdoub1.21Å1.25Å
CACsing1.51Å1.51Å
CACBsing1.53Å1.54Å
COsing1.34Å1.25Å
CGCBsing1.53Å1.53Å
CGSDsing1.81Å1.77Å
SDC5'sing1.81Å1.77Å
C5'C4'sing1.53Å1.52Å
O4'C4'sing1.44Å1.43Å
O4'C1'sing1.44Å1.43Å
C4'C3'sing1.54Å1.52Å
C8N7doub1.30Å1.35ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N7C5sing1.36Å1.35ÅAromatic
N9C1'sing1.46Å1.48Å
N9C4sing1.37Å1.34ÅAromatic
C3'C2'sing1.54Å1.52Å
C3'O3'sing1.43Å1.43Å
C1'C2'sing1.55Å1.52Å
C5C4doub1.41Å1.39ÅAromatic
C5C6sing1.41Å1.39ÅAromatic
N6C6sing1.38Å1.35Å
C2'O2'sing1.43Å1.43Å
C4N3sing1.33Å1.36ÅAromatic
C6N1doub1.33Å1.36ÅAromatic
N3C2doub1.32Å1.34ÅAromatic
N1C2sing1.32Å1.34ÅAromatic
OH1sing0.97Å0.95Å
CAH2sing1.09Å1.10Å
NH3sing0.97Å1.00Å
CBH4sing1.09Å1.10Å
CBH5sing1.09Å1.10Å
CGH6sing1.09Å1.10Å
CGH7sing1.09Å1.10Å
C5'H8sing1.09Å1.10Å
C5'H9sing1.09Å1.10Å
C4'H10sing1.09Å1.10Å
C1'H11sing1.09Å1.10Å
C2'H12sing1.09Å1.10Å
O2'H13sing0.97Å0.95Å
C3'H14sing1.09Å1.10Å
O3'H15sing0.97Å0.95Å
C8H16sing1.08Å1.08Å
N6H17sing0.97Å1.00Å
N6H18sing0.97Å1.00Å
C2H19sing1.08Å1.08Å
C3H20sing1.09Å1.10Å
C3H21sing1.09Å1.10Å
C7H22sing1.09Å1.10Å
C9H23sing1.09Å1.10Å
C9H24sing1.09Å1.10Å
C9H25sing1.09Å1.10Å
C10H26sing1.09Å1.10Å
C10H27sing1.09Å1.10Å
C10H28sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C9C7C10109.3°109.5°
C9C7C3110.4°109.4°
C9C7H22108.3°109.5°
C7C9H23109.5°109.4°
C7C9H24109.4°109.4°
C7C9H25109.5°109.5°
C10C7C3112.0°109.5°
C10C7H22108.4°109.5°
C7C10H26109.5°109.5°
C7C10H27109.5°109.5°
C7C10H28109.5°109.5°
C7C3C1114.8°109.5°
C7C3H20108.1°109.5°
C7C3H21108.1°109.4°
C3C7H22108.3°109.5°
C3C1O2121.1°120.0°
C3C1N115.2°120.0°
C1C3H20108.1°109.5°
C1C3H21108.1°109.5°
O2C1N123.8°120.0°
C1NCA123.4°120.0°
C1NH3118.3°120.0°
NCAC112.5°109.5°
NCACB107.5°109.5°
NCAH2110.0°109.5°
CANH3118.3°120.0°
OXTCCA118.7°120.0°
OXTCO122.0°120.0°
CCACB108.3°109.5°
CACO119.3°120.0°
CCAH2109.4°109.4°
CACBCG115.4°109.5°
CBCAH2109.0°109.5°
CACBH4108.0°109.5°
CACBH5108.0°109.5°
COH1109.5°117.0°
CBCGSD109.4°109.5°
CGCBH4108.0°109.5°
CGCBH5108.0°109.4°
CBCGH6109.5°109.5°
CBCGH7109.5°109.5°
CGSDC5'107.1°103.0°
SDCGH6109.5°109.4°
SDCGH7109.5°109.5°
SDC5'C4'111.5°109.5°
SDC5'H8108.9°109.5°
SDC5'H9108.9°109.5°
C5'C4'O4'110.3°110.4°
C5'C4'C3'111.6°110.4°
C4'C5'H8109.0°109.5°
C4'C5'H9109.0°109.4°
C5'C4'H10109.1°110.4°
C4'O4'C1'109.4°105.3°
O4'C4'C3'106.4°104.8°
O4'C4'H10110.4°110.4°
O4'C1'N9110.6°110.4°
O4'C1'C2'104.3°104.8°
O4'C1'H11110.1°110.4°
C4'C3'C2'105.1°104.1°
C4'C3'O3'108.8°110.5°
C3'C4'H10109.1°110.4°
C4'C3'H14110.4°110.5°
N7C8N9109.0°110.0°
C8N7C5107.5°109.4°
N7C8H16125.5°125.0°
C8N9C1'127.4°126.3°
C8N9C4108.3°107.4°
N9C8H16125.5°125.0°
N7C5C4107.4°107.1°
N7C5C6134.2°134.7°
C1'N9C4124.3°126.2°
N9C1'C2'113.5°110.3°
N9C1'H11109.3°110.5°
N9C4C5107.8°106.0°
N9C4N3132.3°134.9°
C2'C3'O3'110.3°110.5°
C3'C2'C1'102.8°104.0°
C3'C2'O2'111.3°110.5°
C3'C2'H12109.7°110.7°
C2'C3'H14110.4°110.5°
O3'C3'H14111.7°110.6°
C3'O3'H15109.5°114.0°
C1'C2'O2'112.0°110.5°
C2'C1'H11108.8°110.4°
C1'C2'H12109.6°110.5°
C4C5C6118.3°118.2°
C5C4N3119.9°119.1°
C5C6N6121.1°120.8°
C5C6N1119.4°118.4°
N6C6N1119.5°120.8°
C6N6H17109.5°120.0°
C6N6H18109.4°120.0°
O2'C2'H12110.9°110.5°
C2'O2'H13109.5°114.0°
C4N3C2120.7°120.6°
C6N1C2121.1°121.2°
N3C2N1120.5°122.5°
N3C2H19119.8°118.8°
N1C2H19119.7°118.8°
H4CBH5109.5°109.5°
H6CGH7109.5°109.5°
H8C5'H9109.4°109.5°
H17N6H18109.5°120.0°
H20C3H21109.5°109.4°
H23C9H24109.5°109.5°
H23C9H25109.5°109.5°
H24C9H25109.5°109.5°
H26C10H27109.5°109.4°
H26C10H28109.4°109.4°
H27C10H28109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C9C7C10C3122.7°119.9°
C9C7C10H22117.9°120.1°
C9C7C3H22118.5°120.0°
C9C7C3C1170.1°65.0°
C9C7C3H2049.3°55.0°
C9C7C3H2169.1°174.9°
C7C9H23H24120.0°119.9°
C7C9H23H25120.0°120.0°
C7C9H24H25120.0°120.0°
C9C7C10H26180.0°180.0°
C9C7C10H2760.0°60.0°
C9C7C10H2860.0°60.0°
C10C7C3H22119.5°120.0°
C10C7C3C167.8°175.0°
C10C7C3H20171.4°64.9°
C10C7C3H2153.0°55.0°
C10C7C9H23180.0°60.0°
C10C7C9H2460.0°180.0°
C10C7C9H2560.0°59.9°
C7C10H26H27120.0°120.0°
C7C10H26H28120.0°120.0°
C7C10H27H28120.0°120.1°
C7C3C1H20120.8°120.0°
C7C3C1H21120.8°120.0°
C7C3C1O216.4°0.0°
C7C3C1N164.1°180.0°
C7C3H20H21117.6°119.9°
C3C7C9H2356.4°180.0°
C3C7C9H24176.4°60.0°
C3C7C9H2563.7°60.0°
C3C7C10H2657.3°60.0°
C3C7C10H2762.7°180.0°
C3C7C10H28177.3°60.0°
C3C1O2N179.4°180.0°
C3C1NCA178.9°180.0°
C3C1NH31.1°0.0°
C1C3H20H21117.6°120.1°
C1C3C7H2251.6°55.0°
O2C1NCA0.6°0.0°
O2C1NH3179.4°180.0°
O2C1C3H20104.4°120.0°
O2C1C3H21137.2°120.0°
C1NCAH3180.0°180.0°
C1NCAC92.1°85.0°
C1NCACB148.7°155.0°
C1NCAH230.2°35.0°
NC1C3H2075.1°60.0°
NC1C3H2143.3°60.0°
NCACOXT54.1°0.0°
NCACCB118.7°120.0°
NCACH2122.6°120.0°
NCACBH2119.2°120.0°
NCACO126.0°179.7°
NCACBCG51.7°65.0°
NCACBH469.2°55.0°
NCACBH5172.5°175.0°
OXTCCAO179.9°179.8°
OXTCCACB64.6°120.0°
OXTCOH10.0°0.1°
OXTCCAH2176.7°120.0°
CCACBH2119.0°120.0°
CCACBCG173.5°175.0°
CACOH1179.9°179.7°
CCANH387.9°95.0°
CCACBH452.7°65.0°
CCACBH565.6°55.0°
CBCACO115.2°60.3°
CACBCGH4120.9°120.1°
CACBCGH5120.9°120.0°
CACBCGSD171.0°180.0°
CBCANH331.3°25.0°
CACBH4H5117.3°120.0°
CACBCGH651.0°60.0°
CACBCGH769.1°60.0°
OCCAH23.5°59.8°
CBCGSDH6120.0°120.0°
CBCGSDH7120.0°120.0°
CBCGSDC5'79.2°180.0°
CGCBCAH267.5°55.0°
CGCBH4H5117.3°120.0°
CBCGH6H7120.0°120.0°
CGSDC5'C4'140.7°180.0°
SDCGCBH468.2°60.0°
SDCGCBH550.1°60.0°
SDCGH6H7120.0°120.0°
CGSDC5'H820.4°60.0°
CGSDC5'H998.9°60.0°
SDC5'C4'H8120.3°120.0°
SDC5'C4'H9120.3°120.0°
SDC5'C4'O4'63.5°69.6°
SDC5'C4'C3'178.5°175.0°
C5'SDCGH640.8°60.0°
C5'SDCGH7160.8°60.0°
SDC5'H8H9119.0°120.1°
SDC5'C4'H1057.9°52.7°
C5'C4'O4'C3'121.2°118.9°
C5'C4'O4'H10120.6°122.3°
C5'C4'O4'C1'137.8°159.4°
C5'C4'C3'H10120.6°122.3°
C5'C4'C3'C2'114.5°142.8°
C5'C4'C3'O3'127.4°98.5°
C4'C5'H8H9119.1°120.0°
C5'C4'C3'H144.5°24.2°
O4'C4'C3'H10119.1°118.9°
C4'O4'C1'N9154.6°159.3°
O4'C4'C3'C2'5.8°23.9°
O4'C4'C3'O3'112.2°142.6°
C4'O4'C1'C2'32.2°40.5°
O4'C4'C5'H856.8°50.4°
O4'C4'C5'H9176.2°170.4°
C4'O4'C1'H1184.4°78.3°
O4'C4'C3'H14124.9°94.7°
C1'O4'C4'C3'16.6°40.5°
O4'C1'N9C851.8°23.8°
O4'C1'N9C2'116.8°115.3°
O4'C1'N9H11121.5°122.4°
O4'C1'N9C4126.9°156.4°
O4'C1'C2'C3'34.2°24.0°
O4'C1'C2'H11117.5°118.8°
O4'C1'C2'O2'153.9°142.6°
C1'O4'C4'H10101.6°78.3°
O4'C1'C2'H1282.5°94.8°
C4'C3'C2'O3'117.1°118.7°
C4'C3'C2'H14119.0°118.6°
C4'C3'O3'H14122.1°122.6°
C4'C3'C2'C1'24.1°0.0°
C4'C3'C2'O2'144.2°118.6°
C3'C4'C5'H861.2°65.0°
C3'C4'C5'H958.2°55.0°
C4'C3'C2'H1292.5°118.7°
C4'C3'O3'H15180.0°180.0°
N7C8N9H16180.0°180.0°
N7C8N9C1'179.5°180.0°
N7C8N9C40.6°0.2°
C8N7C5C40.1°0.3°
C8N7C5C6180.0°179.9°
N9C8N7C50.4°0.0°
C8N9C1'C4178.7°179.7°
C8N9C1'C2'65.0°91.5°
C8N9C4C50.5°0.4°
C8N9C4N3179.6°179.4°
C8N9C1'H11173.3°146.2°
N7C5C4N90.2°0.4°
N7C5C4C6179.9°179.9°
N7C5C6N60.1°0.1°
N7C5C4N3179.9°179.6°
N7C5C6N1179.9°180.0°
C5N7C8H16179.6°180.0°
N9C1'C2'C3'154.7°142.8°
N9C1'C2'H11122.0°122.4°
C1'N9C4C5179.4°179.8°
N9C1'C2'O2'85.6°98.6°
C1'N9C4N30.7°0.8°
N9C1'C2'H1238.0°24.0°
C1'N9C8H160.6°0.0°
C4N9C1'C2'116.2°88.2°
N9C4C5N3179.9°179.2°
N9C4C5C6179.7°179.8°
N9C4N3C2179.5°179.5°
C4N9C1'H115.5°34.1°
C4N9C8H16179.5°179.8°
C2'C3'O3'H14123.2°122.7°
C3'C2'C1'O2'119.7°118.6°
C3'C2'C1'H12116.7°118.8°
C3'C2'O2'H12122.5°122.8°
C2'C3'C4'H10124.9°94.9°
C3'C2'C1'H1183.3°94.8°
C3'C2'O2'H13180.0°65.4°
C2'C3'O3'H1565.3°65.3°
O3'C3'C2'C1'93.0°118.6°
O3'C3'C2'O2'27.2°0.0°
O3'C3'C4'H106.8°23.8°
O3'C3'C2'H12150.4°122.7°
C1'C2'O2'H12122.9°122.6°
C1'C2'O2'H1365.4°180.0°
C1'C2'C3'H14143.1°118.7°
C4C5C6N6180.0°179.7°
C4C5C6N10.2°0.2°
C5C4N3C20.4°0.5°
C5C6N6N1179.8°179.9°
C6C5C4N30.2°0.5°
C5C6N1C20.4°0.1°
C5C6N6H17179.8°0.0°
C5C6N6H1859.8°180.0°
N6C6N1C2179.8°180.0°
C6N6H17H18120.0°180.0°
O2'C2'C1'H1136.4°23.8°
O2'C2'C3'H1496.8°122.7°
C4N3C2N10.5°0.3°
C4N3C2H19179.5°179.7°
C6N1C2N30.6°0.1°
N1C6N6H170.0°179.9°
N1C6N6H18120.0°0.1°
C6N1C2H19179.5°180.0°
N3C2N1H19180.0°179.9°
H2CANH3149.9°145.1°
H2CACBH4171.6°175.0°
H2CACBH553.4°65.0°
H4CBCGH6171.8°179.9°
H4CBCGH751.8°60.1°
H5CBCGH669.9°60.0°
H5CBCGH7170.1°180.0°
H8C5'C4'H10178.2°172.7°
H9C5'C4'H1062.4°67.3°
H10C4'C3'H14116.0°146.4°
H11C1'C2'H12160.0°146.3°
H12C2'O2'H1357.5°57.4°
H12C2'C3'H1426.5°0.0°
H14C3'O3'H1558.0°57.4°
H20C3C7H2269.1°175.1°
H21C3C7H22172.5°65.1°
H22C7C9H2362.1°60.0°
H22C7C9H2457.9°60.0°
H22C7C9H25177.9°180.0°
H22C7C10H2662.1°60.0°
H22C7C10H27177.9°60.0°
H22C7C10H2857.9°180.0°
H23C9H24H25120.0°120.1°
H26C10H27H28120.0°119.9°

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon