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SXD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
P24O25sing1.61Å1.52Å
O25HO25sing0.97Å0.95Å
O23P24doub1.48Å1.55Å
O27P24sing1.61Å1.54Å
P24O26sing1.61Å1.53Å
O26HO26sing0.97Å0.95Å
O27C28sing1.43Å1.47Å
C29C28sing1.53Å1.53Å
C28H28Asing1.09Å1.10Å
C28H28sing1.09Å1.10Å
C31C29sing1.53Å1.53Å
C32C29sing1.53Å1.58Å
C29C30sing1.53Å1.51Å
H30C30sing1.09Å1.10Å
C30H30Bsing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
H31C31sing1.09Å1.10Å
H31BC31sing1.09Å1.10Å
C31H31Asing1.09Å1.10Å
H32C32sing1.09Å1.10Å
O33C32sing1.43Å1.43Å
C32C34sing1.51Å1.54Å
O33HO33sing0.97Å0.95Å
C34O35doub1.21Å1.23Å
C34N36sing1.35Å1.32Å
HN36N36sing0.97Å1.00Å
N36C37sing1.46Å1.47Å
H37AC37sing1.09Å1.10Å
C37C38sing1.53Å1.54Å
C37H37sing1.09Å1.10Å
C39C38sing1.51Å1.54Å
C38H38sing1.09Å1.10Å
C38H38Asing1.09Å1.10Å
N41C39sing1.35Å1.33Å
O40C39doub1.21Å1.24Å
C42N41sing1.46Å1.45Å
N41HN41sing0.97Å1.00Å
C43C42sing1.53Å1.52Å
H42AC42sing1.09Å1.10Å
H42C42sing1.09Å1.10Å
S1C43sing1.81Å1.80Å
C43H43Asing1.09Å1.10Å
C43H43sing1.09Å1.10Å
C1S1sing1.81Å1.82Å
H1C1sing1.09Å1.10Å
C1C2sing1.53Å1.54Å
C1H1Asing1.09Å1.10Å
C3C2sing1.51Å1.53Å
H2C2sing1.09Å1.10Å
C2H2Asing1.09Å1.10Å
C4C3sing1.51Å1.52Å
C3O3doub1.21Å1.25Å
H4AC4sing1.09Å1.10Å
H4C4sing1.09Å1.10Å
C4C5sing1.51Å1.53Å
C5O5doub1.21Å1.25Å
C5C6sing1.51Å1.51Å
H6BC6sing1.09Å1.10Å
H6C6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
P24O25HO25109.5°114.0°
O25P24O23109.1°109.5°
O25P24O27104.7°109.5°
O25P24O26107.2°109.5°
O23P24O27109.5°109.4°
O23P24O26118.8°109.5°
O27P24O26106.7°109.5°
P24O27C28116.2°123.0°
P24O26HO26109.5°114.0°
O27C28C29112.0°109.5°
O27C28H28A108.6°109.5°
O27C28H28108.0°109.5°
C29C28H28A108.6°109.5°
C29C28H28108.1°109.4°
C28C29C31110.1°109.5°
C28C29C32112.2°109.5°
C28C29C30106.6°109.5°
H28AC28H28111.5°109.5°
C31C29C32109.1°109.4°
C31C29C30110.2°109.5°
C29C31H31109.5°109.4°
C29C31H31B109.5°109.5°
C29C31H31A109.5°109.5°
C32C29C30108.6°109.5°
C29C32H32104.7°109.5°
C29C32O33110.5°109.5°
C29C32C34113.6°109.5°
C29C30H30109.5°109.5°
C29C30H30B109.5°109.4°
C29C30H30A109.5°109.5°
H30C30H30B109.5°109.5°
H30C30H30A109.5°109.5°
H30BC30H30A109.5°109.5°
H31C31H31B109.4°109.4°
H31C31H31A109.5°109.5°
H31BC31H31A109.5°109.5°
H32C32O33113.1°109.4°
H32C32C34110.0°109.5°
O33C32C34105.2°109.4°
C32O33HO33109.5°114.0°
C32C34O35117.7°120.0°
C32C34N36119.6°120.0°
O35C34N36122.7°120.0°
C34N36HN36118.1°119.9°
C34N36C37123.9°120.0°
HN36N36C37118.1°120.1°
N36C37H37A108.1°109.5°
N36C37C38113.5°109.5°
N36C37H37107.2°109.5°
H37AC37C38108.2°109.4°
H37AC37H37112.7°109.5°
C38C37H37107.2°109.4°
C37C38C39115.2°109.5°
C37C38H38107.6°109.4°
C37C38H38A106.3°109.4°
C39C38H38107.6°109.5°
C39C38H38A106.3°109.5°
C38C39N41115.4°120.0°
C38C39O40121.2°120.0°
H38C38H38A114.1°109.5°
N41C39O40123.4°120.0°
C39N41C42125.1°120.0°
C39N41HN41117.5°120.1°
C42N41HN41117.4°119.9°
N41C42C43112.0°109.5°
N41C42H42A108.7°109.5°
N41C42H42108.1°109.5°
C43C42H42A108.6°109.5°
C43C42H42108.1°109.5°
C42C43S1113.0°109.5°
C42C43H43A108.3°109.5°
C42C43H43107.5°109.5°
H42AC42H42111.4°109.5°
S1C43H43A108.3°109.5°
S1C43H43107.5°109.4°
C43S1C1101.6°103.0°
H43AC43H43112.3°109.5°
S1C1H1107.7°109.5°
S1C1C2114.9°109.5°
S1C1H1A106.5°109.5°
H1C1C2107.7°109.5°
H1C1H1A113.8°109.4°
C2C1H1A106.5°109.5°
C1C2C3113.8°109.5°
C1C2H2108.1°109.5°
C1C2H2A107.1°109.5°
C3C2H2108.1°109.4°
C3C2H2A107.1°109.5°
C2C3C4119.0°120.0°
C2C3O3120.8°120.0°
H2C2H2A112.9°109.5°
C4C3O3120.2°120.0°
C3C4H4A107.5°109.5°
C3C4H4106.0°109.5°
C3C4C5115.7°109.5°
H4AC4H4114.5°109.5°
H4AC4C5107.4°109.5°
H4C4C5106.0°109.4°
C4C5O5120.9°120.0°
C4C5C6118.3°120.0°
O5C5C6120.8°120.0°
C5C6H6B109.5°109.5°
C5C6H6109.4°109.5°
C5C6H6A109.5°109.5°
H6BC6H6109.5°109.5°
H6BC6H6A109.4°109.4°
H6C6H6A109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O25P24O23O27114.1°120.0°
O25P24O23O26123.1°120.0°
O25P24O27O26113.4°120.0°
O25P24O26HO26127.5°60.0°
O25P24O27C2855.4°64.9°
HO25O25P24O23163.7°180.0°
HO25O25P24O2779.1°60.0°
HO25O25P24O2633.9°60.0°
O23P24O27O26129.7°120.0°
O23P24O26HO263.4°60.0°
O23P24O27C28172.3°55.1°
O27P24O26HO26120.8°180.0°
P24O27C28C29169.1°180.0°
P24O27C28H28A49.1°59.9°
P24O27C28H2872.0°60.1°
O26P24O27C2858.0°175.0°
O27C28C29H28A120.0°120.0°
O27C28C29H28118.9°119.9°
O27C28H28AH28118.9°120.0°
O27C28C29C3167.9°60.0°
O27C28C29C3253.8°180.0°
O27C28C29C30172.6°60.0°
C29C28H28AH28119.0°120.0°
C28C29C31C32123.5°120.0°
C28C29C31C30117.3°120.0°
C28C29C32C30117.6°120.0°
C28C29C30H3037.9°177.1°
C28C29C30H30B82.1°57.1°
C28C29C30H30A157.9°62.9°
C28C29C31H31107.3°67.2°
C28C29C31H31B12.7°172.9°
C28C29C31H31A132.7°52.8°
C28C29C32H3254.8°174.5°
C28C29C32O33176.9°65.5°
C28C29C32C3465.2°54.5°
H28AC28C29C31172.1°180.0°
H28AC28C29C3266.3°60.0°
H28AC28C29C3052.6°60.0°
H28C28C29C3151.0°60.0°
H28C28C29C32172.6°60.0°
H28C28C29C3068.6°180.0°
C31C29C32C30120.1°120.0°
C31C29C30H30157.3°57.0°
C31C29C30H30B37.4°63.0°
C31C29C30H30A82.6°177.1°
C29C31H31H31B120.0°119.9°
C29C31H31H31A120.0°120.1°
C29C31H31BH31A120.0°120.1°
C31C29C32H3267.5°54.5°
C31C29C32O3354.6°174.5°
C31C29C32C34172.6°65.5°
C32C29C30H3083.2°62.9°
C32C29C30H30B156.8°177.1°
C32C29C30H30A36.8°57.1°
C32C29C31H31129.2°172.8°
C32C29C31H31B110.8°52.9°
C32C29C31H31A9.2°67.2°
C29C32H32O33120.4°120.0°
C29C32H32C34122.4°120.1°
C29C32O33C34123.0°120.0°
C29C32O33HO3352.2°60.0°
C29C32C34O35129.0°107.8°
C29C32C34N3651.1°72.2°
C29C30H30H30B120.0°120.0°
C29C30H30H30A120.0°120.0°
C29C30H30BH30A120.0°120.0°
C30C29C31H3110.1°52.8°
C30C29C31H31B130.0°67.1°
C30C29C31H31A109.9°172.8°
C30C29C32H32172.4°65.5°
C30C29C32O3365.5°54.5°
C30C29C32C3452.4°174.5°
H30C30H30BH30A120.0°120.1°
H31C31H31BH31A120.0°120.0°
H32C32O33C34120.1°120.0°
H32C32O33HO33169.2°180.0°
H32C32C34O35114.1°132.2°
H32C32C34N3665.8°47.9°
O33C32C34O358.0°12.2°
O33C32C34N36172.1°167.8°
C34C32O33HO3370.8°60.0°
C32C34O35N36179.9°179.9°
C32C34N36HN360.2°5.1°
C32C34N36C37179.8°174.9°
O35C34N36HN36179.9°174.8°
O35C34N36C370.1°5.2°
C34N36HN36C37180.0°179.9°
C34N36C37H37A82.3°60.0°
C34N36C37C38157.6°180.0°
C34N36C37H3739.4°60.0°
HN36N36C37H37A97.7°119.9°
HN36N36C37C3822.4°0.0°
HN36N36C37H37140.6°120.0°
N36C37H37AC38123.3°120.0°
N36C37H37AH37118.3°120.0°
N36C37C38H37118.2°120.0°
N36C37C38C3960.9°180.0°
N36C37C38H3859.1°60.1°
N36C37C38H38A178.3°60.0°
H37AC37C38H37121.8°120.0°
H37AC37C38C39179.1°60.0°
H37AC37C38H3860.9°60.0°
H37AC37C38H38A61.7°180.0°
C37C38C39H38120.0°119.9°
C37C38C39H38A117.4°120.0°
C37C38H38H38A117.6°119.9°
C37C38C39N4118.1°180.0°
C37C38C39O40161.9°0.0°
H37C37C38C3957.3°60.0°
H37C37C38H38177.3°180.0°
H37C37C38H38A60.1°60.0°
C39C38H38H38A117.6°120.1°
C38C39N41O40179.9°179.9°
C38C39N41C42179.9°180.0°
C38C39N41HN410.1°0.1°
H38C38C39N41101.9°60.1°
H38C38C39O4078.1°120.0°
H38AC38C39N41135.5°60.0°
H38AC38C39O4044.5°119.9°
C39N41C42HN41180.0°179.9°
C39N41C42C43155.4°180.0°
C39N41C42H42A35.4°60.0°
C39N41C42H4285.7°60.0°
O40C39N41C420.0°0.1°
O40C39N41HN41180.0°180.0°
N41C42C43H42A120.0°120.0°
N41C42C43H42118.9°120.0°
N41C42H42AH42119.0°120.0°
N41C42C43S1169.7°180.0°
N41C42C43H43A49.7°60.0°
N41C42C43H4371.9°60.1°
HN41N41C42C4324.6°0.1°
HN41N41C42H42A144.6°119.9°
HN41N41C42H4294.3°120.0°
C43C42H42AH42119.0°120.0°
C42C43S1H43A120.0°120.0°
C42C43S1H43118.4°120.0°
C42C43H43AH43118.6°120.0°
C42C43S1C1179.5°180.0°
H42AC42C43S170.3°60.0°
H42AC42C43H43A169.7°180.0°
H42AC42C43H4348.1°59.9°
H42C42C43S150.8°60.0°
H42C42C43H43A69.2°60.0°
H42C42C43H43169.2°179.9°
S1C43H43AH43118.5°119.9°
C43S1C1H160.2°60.0°
C43S1C1C259.8°180.0°
C43S1C1H1A177.3°60.0°
H43AC43S1C159.5°60.0°
H43C43S1C162.0°60.0°
S1C1H1C2124.4°120.0°
S1C1H1H1A117.8°120.0°
S1C1C2H1A117.6°120.0°
S1C1C2C362.6°180.0°
S1C1C2H257.4°60.0°
S1C1C2H2A179.3°60.0°
H1C1C2H1A122.4°120.0°
H1C1C2C3177.4°60.0°
H1C1C2H262.6°180.0°
H1C1C2H2A59.3°60.0°
C1C2C3H2120.0°120.0°
C1C2C3H2A118.1°120.0°
C1C2H2H2A118.2°120.0°
C1C2C3C4110.9°180.0°
C1C2C3O366.8°0.0°
H1AC1C2C355.0°59.9°
H1AC1C2H2175.0°60.0°
H1AC1C2H2A63.1°180.0°
C3C2H2H2A118.3°120.0°
C2C3C4O3177.7°180.0°
C2C3C4H4A40.0°60.0°
C2C3C4H4162.9°60.1°
C2C3C4C580.0°180.0°
H2C2C3C4129.1°60.0°
H2C2C3O353.2°120.0°
H2AC2C3C47.2°60.0°
H2AC2C3O3175.2°120.0°
C3C4H4AH4117.5°120.0°
C3C4H4AC5125.1°120.0°
C3C4H4C5123.5°119.9°
C3C4C5O5100.5°0.0°
C3C4C5C682.1°180.0°
O3C3C4H4A137.7°120.0°
O3C3C4H414.8°120.0°
O3C3C4C5102.4°0.0°
H4AC4H4C5118.2°120.0°
H4AC4C5O5139.5°120.0°
H4AC4C5C637.9°60.0°
H4C4C5O516.6°119.9°
H4C4C5C6160.8°60.0°
C4C5O5C6177.3°180.0°
C4C5C6H6B107.5°180.0°
C4C5C6H612.5°60.0°
C4C5C6H6A132.5°60.0°
O5C5C6H6B75.1°0.1°
O5C5C6H6164.9°120.0°
O5C5C6H6A44.9°120.0°
C5C6H6BH6120.0°120.1°
C5C6H6BH6A120.0°120.0°
C5C6H6H6A120.0°120.0°
H6BC6H6H6A120.0°119.9°

247947

PDB entries from 2026-01-21

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