SVY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.46Å
CA	C	sing	1.51Å	1.55Å
C	O	doub	1.21Å	1.24Å
CA	CB	sing	1.53Å	1.53Å
CB	OG	sing	1.43Å	1.41Å
C1	C2	sing	1.53Å	1.53Å
C1	C3	sing	1.53Å	1.54Å
C1'	C2'	sing	1.53Å	1.52Å
C1'	C3'	sing	1.53Å	1.52Å
OG	P	sing	1.61Å	1.61Å
C1	O1P	sing	1.43Å	1.45Å
P	O1P	sing	1.61Å	1.64Å
C1'	O2P	sing	1.43Å	1.42Å
P	O2P	sing	1.61Å	1.61Å
P	O3P	doub	1.48Å	1.60Å
C	OXT	sing	1.34Å	1.34Å
N	HN1	sing	1.01Å	1.00Å
N	HN2	sing	1.01Å	1.00Å
CA	HA	sing	1.09Å	1.10Å
CB	HBC1	sing	1.09Å	1.10Å
CB	HBC2	sing	1.09Å	1.10Å
OXT	HOT	sing	0.97Å	0.95Å
C1	H1	sing	1.09Å	1.10Å
C2	H2C1	sing	1.09Å	1.10Å
C2	H2C2	sing	1.09Å	1.10Å
C2	H2C3	sing	1.09Å	1.10Å
C3	H3C1	sing	1.09Å	1.10Å
C3	H3C2	sing	1.09Å	1.10Å
C3	H3C3	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C2'	H2'3	sing	1.09Å	1.10Å
C3'	H3'1	sing	1.09Å	1.10Å
C3'	H3'2	sing	1.09Å	1.10Å
C3'	H3'3	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N	CA	C	110.4°	109.5°
N	CA	CB	109.2°	109.5°
CA	N	HN1	109.5°	110.9°
CA	N	HN2	109.5°	111.0°
N	CA	HA	108.8°	109.4°
CA	C	O	119.5°	120.0°
C	CA	CB	112.7°	109.5°
CA	C	OXT	118.2°	120.0°
C	CA	HA	107.7°	109.5°
O	C	OXT	122.2°	120.0°
CA	CB	OG	112.0°	109.4°
CB	CA	HA	107.9°	109.5°
CA	CB	HBC1	108.8°	109.5°
CA	CB	HBC2	108.8°	109.5°
CB	OG	P	113.4°	123.0°
OG	CB	HBC1	108.8°	109.5°
OG	CB	HBC2	108.9°	109.5°
C2	C1	C3	110.2°	109.5°
C2	C1	O1P	109.9°	109.4°
C2	C1	H1	106.9°	109.5°
C1	C2	H2C1	109.5°	109.5°
C1	C2	H2C2	109.5°	109.4°
C1	C2	H2C3	109.4°	109.4°
C3	C1	O1P	114.7°	109.5°
C3	C1	H1	106.9°	109.5°
C1	C3	H3C1	109.5°	109.5°
C1	C3	H3C2	109.4°	109.5°
C1	C3	H3C3	109.5°	109.5°
C2'	C1'	C3'	110.9°	109.4°
C2'	C1'	O2P	108.6°	109.5°
C2'	C1'	H1'	109.0°	109.5°
C1'	C2'	H2'1	109.5°	109.5°
C1'	C2'	H2'2	109.4°	109.5°
C1'	C2'	H2'3	109.4°	109.5°
C3'	C1'	O2P	109.1°	109.5°
C3'	C1'	H1'	109.0°	109.5°
C1'	C3'	H3'1	109.5°	109.5°
C1'	C3'	H3'2	109.5°	109.4°
C1'	C3'	H3'3	109.4°	109.5°
OG	P	O1P	145.5°	109.5°
OG	P	O2P	77.1°	109.5°
OG	P	O3P	101.9°	109.5°
C1	O1P	P	127.0°	123.0°
O1P	C1	H1	107.9°	109.5°
O1P	P	O2P	104.9°	109.5°
O1P	P	O3P	110.9°	109.5°
C1'	O2P	P	122.7°	123.0°
O2P	C1'	H1'	110.3°	109.4°
O2P	P	O3P	102.5°	109.5°
C	OXT	HOT	109.5°	116.9°
HN1	N	HN2	109.4°	111.0°
HBC1	CB	HBC2	109.4°	109.5°
H2C1	C2	H2C2	109.5°	109.5°
H2C1	C2	H2C3	109.5°	109.5°
H2C2	C2	H2C3	109.5°	109.4°
H3C1	C3	H3C2	109.5°	109.5°
H3C1	C3	H3C3	109.4°	109.5°
H3C2	C3	H3C3	109.5°	109.5°
H2'1	C2'	H2'2	109.5°	109.5°
H2'1	C2'	H2'3	109.5°	109.4°
H2'2	C2'	H2'3	109.5°	109.4°
H3'1	C3'	H3'2	109.5°	109.5°
H3'1	C3'	H3'3	109.5°	109.5°
H3'2	C3'	H3'3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N	CA	C	CB	122.4°	120.0°
N	CA	C	HA	118.7°	120.0°
N	CA	C	O	57.7°	20.0°
N	CA	CB	HA	118.2°	120.0°
N	CA	CB	OG	160.4°	65.0°
N	CA	C	OXT	121.9°	160.0°
CA	N	HN1	HN2	120.0°	123.9°
N	CA	CB	HBC1	40.0°	55.0°
N	CA	CB	HBC2	79.2°	175.1°
CA	C	O	OXT	179.5°	180.0°
C	CA	CB	HA	118.8°	120.0°
C	CA	CB	OG	76.6°	175.0°
C	CA	N	HN1	180.0°	63.9°
C	CA	N	HN2	60.0°	60.0°
C	CA	CB	HBC1	163.0°	65.0°
C	CA	CB	HBC2	43.8°	55.0°
CA	C	OXT	HOT	179.5°	180.0°
O	C	CA	CB	179.9°	100.0°
O	C	CA	HA	61.0°	140.0°
O	C	OXT	HOT	0.0°	0.0°
CA	CB	OG	HBC1	120.4°	120.0°
CA	CB	OG	HBC2	120.4°	120.0°
CA	CB	OG	P	150.6°	180.0°
CB	CA	C	OXT	0.6°	80.0°
CB	CA	N	HN1	55.6°	176.1°
CB	CA	N	HN2	175.6°	60.1°
CA	CB	HBC1	HBC2	118.8°	120.0°
CB	OG	P	O1P	108.6°	65.0°
CB	OG	P	O2P	153.9°	175.0°
CB	OG	P	O3P	53.5°	55.0°
OG	CB	CA	HA	42.2°	55.0°
OG	CB	HBC1	HBC2	118.8°	120.0°
C2	C1	C3	O1P	124.7°	120.0°
C2	C1	C3	H1	115.8°	120.0°
C2	C1	O1P	H1	116.2°	120.0°
C2	C1	O1P	P	148.0°	124.3°
C1	C2	H2C1	H2C2	120.0°	120.0°
C1	C2	H2C1	H2C3	120.0°	120.0°
C1	C2	H2C2	H2C3	120.0°	119.9°
C2	C1	C3	H3C1	180.0°	60.0°
C2	C1	C3	H3C2	60.0°	180.0°
C2	C1	C3	H3C3	60.0°	60.0°
C3	C1	O1P	H1	118.9°	120.0°
C3	C1	O1P	P	23.1°	115.6°
C3	C1	C2	H2C1	180.0°	175.1°
C3	C1	C2	H2C2	60.0°	64.9°
C3	C1	C2	H2C3	60.0°	55.0°
C1	C3	H3C1	H3C2	120.0°	120.0°
C1	C3	H3C1	H3C3	120.0°	120.0°
C1	C3	H3C2	H3C3	120.0°	120.0°
C2'	C1'	C3'	O2P	119.6°	120.0°
C2'	C1'	C3'	H1'	119.9°	120.0°
C2'	C1'	O2P	H1'	119.3°	120.0°
C2'	C1'	O2P	P	145.8°	115.1°
C1'	C2'	H2'1	H2'2	120.0°	120.1°
C1'	C2'	H2'1	H2'3	120.0°	120.0°
C1'	C2'	H2'2	H2'3	120.0°	120.0°
C2'	C1'	C3'	H3'1	180.0°	60.0°
C2'	C1'	C3'	H3'2	60.0°	180.0°
C2'	C1'	C3'	H3'3	60.0°	60.0°
C3'	C1'	O2P	H1'	119.7°	120.0°
C3'	C1'	O2P	P	93.2°	124.9°
C3'	C1'	C2'	H2'1	180.0°	55.1°
C3'	C1'	C2'	H2'2	60.0°	65.0°
C3'	C1'	C2'	H2'3	60.0°	175.1°
C1'	C3'	H3'1	H3'2	120.0°	120.0°
C1'	C3'	H3'1	H3'3	120.0°	120.0°
C1'	C3'	H3'2	H3'3	120.0°	120.0°
OG	P	O1P	C1	67.2°	65.8°
OG	P	O1P	O2P	88.7°	120.0°
OG	P	O1P	O3P	161.3°	120.0°
OG	P	O2P	C1'	94.8°	175.6°
OG	P	O2P	O3P	99.6°	120.0°
P	OG	CB	HBC1	89.0°	60.0°
P	OG	CB	HBC2	30.2°	60.0°
C1	O1P	P	O2P	156.0°	174.3°
C1	O1P	P	O3P	94.0°	54.2°
O1P	C1	C2	H2C1	52.6°	64.9°
O1P	C1	C2	H2C2	172.7°	55.2°
O1P	C1	C2	H2C3	67.3°	175.0°
O1P	C1	C3	H3C1	55.3°	60.0°
O1P	C1	C3	H3C2	64.7°	60.0°
O1P	C1	C3	H3C3	175.3°	180.0°
O1P	P	O2P	C1'	49.7°	64.4°
O1P	P	O2P	O3P	115.9°	120.0°
P	O1P	C1	H1	95.8°	4.4°
C1'	O2P	P	O3P	165.6°	55.6°
O2P	C1'	C2'	H2'1	60.1°	64.9°
O2P	C1'	C2'	H2'2	179.9°	175.0°
O2P	C1'	C2'	H2'3	59.9°	55.1°
O2P	C1'	C3'	H3'1	60.5°	60.0°
O2P	C1'	C3'	H3'2	59.5°	60.0°
O2P	C1'	C3'	H3'3	179.5°	180.0°
P	O2P	C1'	H1'	26.5°	5.0°
OXT	C	CA	HA	119.5°	40.0°
HN1	N	CA	HA	62.0°	56.1°
HN2	N	CA	HA	58.0°	180.0°
HA	CA	CB	HBC1	78.2°	175.0°
HA	CA	CB	HBC2	162.6°	65.0°
H1	C1	C2	H2C1	64.2°	55.1°
H1	C1	C2	H2C2	55.8°	175.1°
H1	C1	C2	H2C3	175.8°	65.0°
H1	C1	C3	H3C1	64.2°	180.0°
H1	C1	C3	H3C2	175.8°	60.0°
H1	C1	C3	H3C3	55.8°	60.0°
H2C1	C2	H2C2	H2C3	120.0°	120.1°
H3C1	C3	H3C2	H3C3	120.0°	120.0°
H1'	C1'	C2'	H2'1	60.1°	175.1°
H1'	C1'	C2'	H2'2	59.9°	55.0°
H1'	C1'	C2'	H2'3	179.9°	64.9°
H1'	C1'	C3'	H3'1	60.1°	179.9°
H1'	C1'	C3'	H3'2	179.9°	60.0°
H1'	C1'	C3'	H3'3	59.9°	60.0°
H2'1	C2'	H2'2	H2'3	120.0°	119.9°
H3'1	C3'	H3'2	H3'3	120.0°	120.0°

Definition date:	2007-02-13
Last modified:	2013-04-11
Release status:	REL
Processing site:	RCSB