SVY
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.46Å | |
CA | C | sing | 1.51Å | 1.55Å | |
C | O | doub | 1.21Å | 1.24Å | |
CA | CB | sing | 1.53Å | 1.53Å | |
CB | OG | sing | 1.43Å | 1.41Å | |
C1 | C2 | sing | 1.53Å | 1.53Å | |
C1 | C3 | sing | 1.53Å | 1.54Å | |
C1' | C2' | sing | 1.53Å | 1.52Å | |
C1' | C3' | sing | 1.53Å | 1.52Å | |
OG | P | sing | 1.61Å | 1.61Å | |
C1 | O1P | sing | 1.43Å | 1.45Å | |
P | O1P | sing | 1.61Å | 1.64Å | |
C1' | O2P | sing | 1.43Å | 1.42Å | |
P | O2P | sing | 1.61Å | 1.61Å | |
P | O3P | doub | 1.48Å | 1.60Å | |
C | OXT | sing | 1.34Å | 1.34Å | |
N | HN1 | sing | 1.01Å | 1.00Å | |
N | HN2 | sing | 1.01Å | 1.00Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CB | HBC1 | sing | 1.09Å | 1.10Å | |
CB | HBC2 | sing | 1.09Å | 1.10Å | |
OXT | HOT | sing | 0.97Å | 0.95Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C2 | H2C1 | sing | 1.09Å | 1.10Å | |
C2 | H2C2 | sing | 1.09Å | 1.10Å | |
C2 | H2C3 | sing | 1.09Å | 1.10Å | |
C3 | H3C1 | sing | 1.09Å | 1.10Å | |
C3 | H3C2 | sing | 1.09Å | 1.10Å | |
C3 | H3C3 | sing | 1.09Å | 1.10Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C2' | H2'1 | sing | 1.09Å | 1.10Å | |
C2' | H2'2 | sing | 1.09Å | 1.10Å | |
C2' | H2'3 | sing | 1.09Å | 1.10Å | |
C3' | H3'1 | sing | 1.09Å | 1.10Å | |
C3' | H3'2 | sing | 1.09Å | 1.10Å | |
C3' | H3'3 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N | CA | C | 110.4° | 109.5° |
N | CA | CB | 109.2° | 109.5° |
CA | N | HN1 | 109.5° | 110.9° |
CA | N | HN2 | 109.5° | 111.0° |
N | CA | HA | 108.8° | 109.4° |
CA | C | O | 119.5° | 120.0° |
C | CA | CB | 112.7° | 109.5° |
CA | C | OXT | 118.2° | 120.0° |
C | CA | HA | 107.7° | 109.5° |
O | C | OXT | 122.2° | 120.0° |
CA | CB | OG | 112.0° | 109.4° |
CB | CA | HA | 107.9° | 109.5° |
CA | CB | HBC1 | 108.8° | 109.5° |
CA | CB | HBC2 | 108.8° | 109.5° |
CB | OG | P | 113.4° | 123.0° |
OG | CB | HBC1 | 108.8° | 109.5° |
OG | CB | HBC2 | 108.9° | 109.5° |
C2 | C1 | C3 | 110.2° | 109.5° |
C2 | C1 | O1P | 109.9° | 109.4° |
C2 | C1 | H1 | 106.9° | 109.5° |
C1 | C2 | H2C1 | 109.5° | 109.5° |
C1 | C2 | H2C2 | 109.5° | 109.4° |
C1 | C2 | H2C3 | 109.4° | 109.4° |
C3 | C1 | O1P | 114.7° | 109.5° |
C3 | C1 | H1 | 106.9° | 109.5° |
C1 | C3 | H3C1 | 109.5° | 109.5° |
C1 | C3 | H3C2 | 109.4° | 109.5° |
C1 | C3 | H3C3 | 109.5° | 109.5° |
C2' | C1' | C3' | 110.9° | 109.4° |
C2' | C1' | O2P | 108.6° | 109.5° |
C2' | C1' | H1' | 109.0° | 109.5° |
C1' | C2' | H2'1 | 109.5° | 109.5° |
C1' | C2' | H2'2 | 109.4° | 109.5° |
C1' | C2' | H2'3 | 109.4° | 109.5° |
C3' | C1' | O2P | 109.1° | 109.5° |
C3' | C1' | H1' | 109.0° | 109.5° |
C1' | C3' | H3'1 | 109.5° | 109.5° |
C1' | C3' | H3'2 | 109.5° | 109.4° |
C1' | C3' | H3'3 | 109.4° | 109.5° |
OG | P | O1P | 145.5° | 109.5° |
OG | P | O2P | 77.1° | 109.5° |
OG | P | O3P | 101.9° | 109.5° |
C1 | O1P | P | 127.0° | 123.0° |
O1P | C1 | H1 | 107.9° | 109.5° |
O1P | P | O2P | 104.9° | 109.5° |
O1P | P | O3P | 110.9° | 109.5° |
C1' | O2P | P | 122.7° | 123.0° |
O2P | C1' | H1' | 110.3° | 109.4° |
O2P | P | O3P | 102.5° | 109.5° |
C | OXT | HOT | 109.5° | 116.9° |
HN1 | N | HN2 | 109.4° | 111.0° |
HBC1 | CB | HBC2 | 109.4° | 109.5° |
H2C1 | C2 | H2C2 | 109.5° | 109.5° |
H2C1 | C2 | H2C3 | 109.5° | 109.5° |
H2C2 | C2 | H2C3 | 109.5° | 109.4° |
H3C1 | C3 | H3C2 | 109.5° | 109.5° |
H3C1 | C3 | H3C3 | 109.4° | 109.5° |
H3C2 | C3 | H3C3 | 109.5° | 109.5° |
H2'1 | C2' | H2'2 | 109.5° | 109.5° |
H2'1 | C2' | H2'3 | 109.5° | 109.4° |
H2'2 | C2' | H2'3 | 109.5° | 109.4° |
H3'1 | C3' | H3'2 | 109.5° | 109.5° |
H3'1 | C3' | H3'3 | 109.5° | 109.5° |
H3'2 | C3' | H3'3 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N | CA | C | CB | 122.4° | 120.0° |
N | CA | C | HA | 118.7° | 120.0° |
N | CA | C | O | 57.7° | 20.0° |
N | CA | CB | HA | 118.2° | 120.0° |
N | CA | CB | OG | 160.4° | 65.0° |
N | CA | C | OXT | 121.9° | 160.0° |
CA | N | HN1 | HN2 | 120.0° | 123.9° |
N | CA | CB | HBC1 | 40.0° | 55.0° |
N | CA | CB | HBC2 | 79.2° | 175.1° |
CA | C | O | OXT | 179.5° | 180.0° |
C | CA | CB | HA | 118.8° | 120.0° |
C | CA | CB | OG | 76.6° | 175.0° |
C | CA | N | HN1 | 180.0° | 63.9° |
C | CA | N | HN2 | 60.0° | 60.0° |
C | CA | CB | HBC1 | 163.0° | 65.0° |
C | CA | CB | HBC2 | 43.8° | 55.0° |
CA | C | OXT | HOT | 179.5° | 180.0° |
O | C | CA | CB | 179.9° | 100.0° |
O | C | CA | HA | 61.0° | 140.0° |
O | C | OXT | HOT | 0.0° | 0.0° |
CA | CB | OG | HBC1 | 120.4° | 120.0° |
CA | CB | OG | HBC2 | 120.4° | 120.0° |
CA | CB | OG | P | 150.6° | 180.0° |
CB | CA | C | OXT | 0.6° | 80.0° |
CB | CA | N | HN1 | 55.6° | 176.1° |
CB | CA | N | HN2 | 175.6° | 60.1° |
CA | CB | HBC1 | HBC2 | 118.8° | 120.0° |
CB | OG | P | O1P | 108.6° | 65.0° |
CB | OG | P | O2P | 153.9° | 175.0° |
CB | OG | P | O3P | 53.5° | 55.0° |
OG | CB | CA | HA | 42.2° | 55.0° |
OG | CB | HBC1 | HBC2 | 118.8° | 120.0° |
C2 | C1 | C3 | O1P | 124.7° | 120.0° |
C2 | C1 | C3 | H1 | 115.8° | 120.0° |
C2 | C1 | O1P | H1 | 116.2° | 120.0° |
C2 | C1 | O1P | P | 148.0° | 124.3° |
C1 | C2 | H2C1 | H2C2 | 120.0° | 120.0° |
C1 | C2 | H2C1 | H2C3 | 120.0° | 120.0° |
C1 | C2 | H2C2 | H2C3 | 120.0° | 119.9° |
C2 | C1 | C3 | H3C1 | 180.0° | 60.0° |
C2 | C1 | C3 | H3C2 | 60.0° | 180.0° |
C2 | C1 | C3 | H3C3 | 60.0° | 60.0° |
C3 | C1 | O1P | H1 | 118.9° | 120.0° |
C3 | C1 | O1P | P | 23.1° | 115.6° |
C3 | C1 | C2 | H2C1 | 180.0° | 175.1° |
C3 | C1 | C2 | H2C2 | 60.0° | 64.9° |
C3 | C1 | C2 | H2C3 | 60.0° | 55.0° |
C1 | C3 | H3C1 | H3C2 | 120.0° | 120.0° |
C1 | C3 | H3C1 | H3C3 | 120.0° | 120.0° |
C1 | C3 | H3C2 | H3C3 | 120.0° | 120.0° |
C2' | C1' | C3' | O2P | 119.6° | 120.0° |
C2' | C1' | C3' | H1' | 119.9° | 120.0° |
C2' | C1' | O2P | H1' | 119.3° | 120.0° |
C2' | C1' | O2P | P | 145.8° | 115.1° |
C1' | C2' | H2'1 | H2'2 | 120.0° | 120.1° |
C1' | C2' | H2'1 | H2'3 | 120.0° | 120.0° |
C1' | C2' | H2'2 | H2'3 | 120.0° | 120.0° |
C2' | C1' | C3' | H3'1 | 180.0° | 60.0° |
C2' | C1' | C3' | H3'2 | 60.0° | 180.0° |
C2' | C1' | C3' | H3'3 | 60.0° | 60.0° |
C3' | C1' | O2P | H1' | 119.7° | 120.0° |
C3' | C1' | O2P | P | 93.2° | 124.9° |
C3' | C1' | C2' | H2'1 | 180.0° | 55.1° |
C3' | C1' | C2' | H2'2 | 60.0° | 65.0° |
C3' | C1' | C2' | H2'3 | 60.0° | 175.1° |
C1' | C3' | H3'1 | H3'2 | 120.0° | 120.0° |
C1' | C3' | H3'1 | H3'3 | 120.0° | 120.0° |
C1' | C3' | H3'2 | H3'3 | 120.0° | 120.0° |
OG | P | O1P | C1 | 67.2° | 65.8° |
OG | P | O1P | O2P | 88.7° | 120.0° |
OG | P | O1P | O3P | 161.3° | 120.0° |
OG | P | O2P | C1' | 94.8° | 175.6° |
OG | P | O2P | O3P | 99.6° | 120.0° |
P | OG | CB | HBC1 | 89.0° | 60.0° |
P | OG | CB | HBC2 | 30.2° | 60.0° |
C1 | O1P | P | O2P | 156.0° | 174.3° |
C1 | O1P | P | O3P | 94.0° | 54.2° |
O1P | C1 | C2 | H2C1 | 52.6° | 64.9° |
O1P | C1 | C2 | H2C2 | 172.7° | 55.2° |
O1P | C1 | C2 | H2C3 | 67.3° | 175.0° |
O1P | C1 | C3 | H3C1 | 55.3° | 60.0° |
O1P | C1 | C3 | H3C2 | 64.7° | 60.0° |
O1P | C1 | C3 | H3C3 | 175.3° | 180.0° |
O1P | P | O2P | C1' | 49.7° | 64.4° |
O1P | P | O2P | O3P | 115.9° | 120.0° |
P | O1P | C1 | H1 | 95.8° | 4.4° |
C1' | O2P | P | O3P | 165.6° | 55.6° |
O2P | C1' | C2' | H2'1 | 60.1° | 64.9° |
O2P | C1' | C2' | H2'2 | 179.9° | 175.0° |
O2P | C1' | C2' | H2'3 | 59.9° | 55.1° |
O2P | C1' | C3' | H3'1 | 60.5° | 60.0° |
O2P | C1' | C3' | H3'2 | 59.5° | 60.0° |
O2P | C1' | C3' | H3'3 | 179.5° | 180.0° |
P | O2P | C1' | H1' | 26.5° | 5.0° |
OXT | C | CA | HA | 119.5° | 40.0° |
HN1 | N | CA | HA | 62.0° | 56.1° |
HN2 | N | CA | HA | 58.0° | 180.0° |
HA | CA | CB | HBC1 | 78.2° | 175.0° |
HA | CA | CB | HBC2 | 162.6° | 65.0° |
H1 | C1 | C2 | H2C1 | 64.2° | 55.1° |
H1 | C1 | C2 | H2C2 | 55.8° | 175.1° |
H1 | C1 | C2 | H2C3 | 175.8° | 65.0° |
H1 | C1 | C3 | H3C1 | 64.2° | 180.0° |
H1 | C1 | C3 | H3C2 | 175.8° | 60.0° |
H1 | C1 | C3 | H3C3 | 55.8° | 60.0° |
H2C1 | C2 | H2C2 | H2C3 | 120.0° | 120.1° |
H3C1 | C3 | H3C2 | H3C3 | 120.0° | 120.0° |
H1' | C1' | C2' | H2'1 | 60.1° | 175.1° |
H1' | C1' | C2' | H2'2 | 59.9° | 55.0° |
H1' | C1' | C2' | H2'3 | 179.9° | 64.9° |
H1' | C1' | C3' | H3'1 | 60.1° | 179.9° |
H1' | C1' | C3' | H3'2 | 179.9° | 60.0° |
H1' | C1' | C3' | H3'3 | 59.9° | 60.0° |
H2'1 | C2' | H2'2 | H2'3 | 120.0° | 119.9° |
H3'1 | C3' | H3'2 | H3'3 | 120.0° | 120.0° |