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SUD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O2Bsing1.43Å1.43Å
C1C27sing1.53Å1.54Å
C1H11sing1.09Å1.12Å
C1H12sing1.09Å1.12Å
N1C3sing1.35Å1.34Å
N1C6sing1.36Å1.36Å
N1C1'sing1.47Å1.46Å
C3N3sing1.33Å1.35Å
C3O8doub1.22Å1.22Å
N3C4doub1.33Å1.34Å
C4C5sing1.41Å1.46Å
C4N4sing1.38Å1.32Å
C5C6doub1.35Å1.33Å
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
N4HN41sing0.97Å1.02Å
N4HN42sing0.97Å1.02Å
C1'C2'sing1.55Å1.52Å
C1'O4'sing1.44Å1.41Å
C1'H1'sing1.09Å1.12Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.51Å
C2'H2'sing1.09Å1.12Å
O2'H1sing0.97Å0.95Å
C3'C4'sing1.54Å1.54Å
C3'O3'sing1.43Å1.42Å
C3'H3'sing1.09Å1.11Å
C4'O4'sing1.44Å1.42Å
C4'C5'sing1.53Å1.55Å
C4'H4'sing1.09Å1.12Å
O3'H2sing0.97Å0.95Å
C5'O5'sing1.43Å1.45Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
O5'PAsing1.61Å1.63Å
PAO1Adoub1.48Å1.60Å
PAO2Asing1.61Å1.61Å
PAO3Asing1.61Å1.61Å
O2AH2Asing0.97Å0.95Å
O3APBsing1.61Å1.62Å
PBO1Bdoub1.48Å1.61Å
PBO2Bsing1.61Å1.60Å
PBO3Bsing1.61Å1.61Å
O3BH3Bsing0.97Å0.95Å
C27C28sing1.53Å1.56Å
C27O33sing1.43Å1.44Å
C27H27sing1.09Å1.12Å
C28C29sing1.53Å1.56Å
C28O31sing1.43Å1.48Å
C28C32sing1.53Å1.55Å
C29O30sing1.43Å1.44Å
C29H291sing1.09Å1.12Å
C29H292sing1.09Å1.11Å
O30H30sing0.97Å0.95Å
O31P34sing1.61Å1.65Å
C32H321sing1.09Å1.11Å
C32H322sing1.09Å1.11Å
C32H323sing1.09Å1.11Å
O33H33sing0.97Å0.95Å
P34O35doub1.48Å1.48Å
P34O36sing1.61Å1.50Å
P34O37sing1.61Å1.51Å
O36H36sing0.97Å0.95Å
O37H37sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2BC1C27108.9°109.5°
O2BC1H11112.4°109.5°
O2BC1H12112.4°109.5°
C1O2BPB122.3°106.8°
C27C1H11112.4°109.4°
C27C1H12112.4°109.5°
C1C27C28113.7°109.5°
C1C27O33108.5°109.5°
C1C27H27106.9°109.4°
H11C1H1298.0°109.5°
C3N1C6122.1°120.4°
C3N1C1'120.7°119.8°
N1C3N3118.3°121.0°
N1C3O8121.8°119.4°
C6N1C1'117.2°119.8°
N1C6C5121.7°119.3°
N1C6H6120.2°120.3°
N1C1'C2'115.2°110.7°
N1C1'O4'105.8°110.6°
N1C1'H1'107.7°110.5°
N3C3O8119.9°119.5°
C3N3C4122.4°120.8°
N3C4C5119.1°119.6°
N3C4N4118.4°120.3°
C5C4N4122.5°120.2°
C4C5C6116.4°119.0°
C4C5H5126.0°120.5°
C4N4HN41109.0°120.1°
C4N4HN42118.4°120.0°
C6C5H5117.6°120.5°
C5C6H6118.1°120.4°
HN41N4HN42109.0°119.9°
C2'C1'O4'108.0°103.5°
C2'C1'H1'105.5°110.6°
C1'C2'O2'107.9°110.9°
C1'C2'C3'106.3°102.1°
C1'C2'H2'113.1°110.9°
O4'C1'H1'114.9°110.7°
C1'O4'C4'111.7°107.0°
O2'C2'C3'111.1°110.9°
O2'C2'H2'108.5°110.8°
C2'O2'H1107.9°106.8°
C3'C2'H2'110.0°111.0°
C2'C3'C4'104.8°104.1°
C2'C3'O3'111.8°110.5°
C2'C3'H3'110.7°110.5°
C4'C3'O3'108.5°110.8°
C4'C3'H3'113.9°110.4°
C3'C4'O4'107.3°107.4°
C3'C4'C5'110.9°109.9°
C3'C4'H4'110.6°109.9°
O3'C3'H3'107.2°110.4°
C3'O3'H2111.8°106.8°
O4'C4'C5'111.4°109.8°
O4'C4'H4'110.2°109.9°
C5'C4'H4'106.5°109.9°
C4'C5'O5'116.4°109.4°
C4'C5'H5'1109.7°109.5°
C4'C5'H5'2109.7°109.4°
O5'C5'H5'1109.7°109.5°
O5'C5'H5'2109.7°109.5°
C5'O5'PA122.3°106.8°
H5'1C5'H5'2100.5°109.5°
O5'PAO1A112.7°109.5°
O5'PAO2A109.8°109.4°
O5'PAO3A110.5°109.5°
O1APAO2A107.5°109.5°
O1APAO3A109.2°109.5°
O2APAO3A107.0°109.5°
PAO2AH2A109.8°106.8°
PAO3APB113.8°106.8°
O3APBO1B109.6°109.5°
O3APBO2B113.6°109.4°
O3APBO3B108.1°109.4°
O1BPBO2B107.2°109.5°
O1BPBO3B107.8°109.5°
O2BPBO3B110.4°109.5°
PBO3BH3B108.1°106.8°
C28C27O33108.6°109.5°
C28C27H27106.9°109.5°
C27C28C29108.3°109.5°
C27C28O31109.6°109.5°
C27C28C32113.0°109.5°
O33C27H27112.3°109.5°
C27O33H33108.5°106.8°
C29C28O31111.0°109.5°
C29C28C32108.8°109.5°
C28C29O30110.4°109.4°
C28C29H291111.9°109.5°
C28C29H292111.9°109.5°
O31C28C32106.3°109.5°
C28O31P34134.2°106.8°
C28C32H321110.9°109.5°
C28C32H322113.0°109.5°
C28C32H323110.9°109.5°
O30C29H291111.9°109.5°
O30C29H292111.9°109.5°
C29O30H30110.4°106.7°
H291C29H29298.5°109.5°
O31P34O35111.7°109.5°
O31P34O36109.0°109.5°
O31P34O37111.3°109.4°
H321C32H322110.9°109.5°
H321C32H32399.4°109.5°
H322C32H323110.9°109.4°
O35P34O36107.7°109.5°
O35P34O37109.2°109.5°
O36P34O37107.8°109.4°
P34O36H36109.0°106.8°
P34O37H37111.3°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2BC1C27H11125.3°120.0°
O2BC1C27H12125.3°120.0°
O2BC1H11H12118.3°120.0°
C1O2BPBO3A145.7°175.0°
C1O2BPBO1B93.0°55.0°
C1O2BPBO3B24.2°65.0°
O2BC1C27C28150.9°175.0°
O2BC1C27O3388.1°65.0°
O2BC1C27H2733.2°55.0°
C27C1H11H12118.3°120.0°
C27C1O2BPB178.7°180.0°
C1C27C28O33120.9°120.0°
C1C27C28H27117.8°120.0°
C1C27O33H27117.9°120.0°
C1C27C28C29179.7°175.0°
C1C27C28O3159.2°65.0°
C1C27C28C3259.2°55.0°
C1C27O33H33180.0°60.0°
H11C1O2BPB56.1°60.0°
H11C1C27C2825.6°55.0°
H11C1C27O33146.6°175.0°
H11C1C27H2792.1°65.0°
H12C1O2BPB53.4°60.0°
H12C1C27C2883.8°65.0°
H12C1C27O3337.1°55.0°
H12C1C27H27158.4°175.0°
C3N1C6C1'179.2°179.7°
N1C3N3O8179.8°179.4°
N1C3N3C40.2°0.5°
C3N1C6C50.2°0.3°
C3N1C6H6179.8°179.7°
C3N1C1'C2'123.6°60.9°
C3N1C1'O4'117.2°53.3°
C3N1C1'H1'6.2°176.2°
C6N1C3N30.4°0.6°
C6N1C3O8179.9°180.0°
N1C6C5C40.1°0.0°
N1C6C5H6180.0°180.0°
N1C6C5H5179.9°180.0°
C6N1C1'C2'57.2°119.4°
C6N1C1'O4'62.1°126.5°
C6N1C1'H1'174.5°3.5°
C1'N1C3N3178.9°179.7°
C1'N1C3O80.9°0.3°
C1'N1C6C5179.0°180.0°
C1'N1C6H61.0°0.0°
N1C1'C2'O4'118.0°118.6°
N1C1'C2'H1'118.6°122.9°
N1C1'O4'H1'118.7°122.8°
N1C1'C2'O2'122.8°86.2°
N1C1'C2'C3'118.0°155.7°
N1C1'C2'H2'2.8°37.4°
N1C1'O4'C4'132.7°158.7°
C3N3C4C50.1°0.2°
C3N3C4N4179.8°179.7°
O8C3N3C4180.0°180.0°
N3C4C5N4179.9°179.9°
N3C4C5C60.3°0.1°
N3C4C5H5179.8°180.0°
N3C4N4HN4154.7°180.0°
N3C4N4HN42180.0°0.0°
C4C5C6H5180.0°180.0°
C4C5C6H6179.9°180.0°
C5C4N4HN41125.2°0.0°
C5C4N4HN420.1°180.0°
N4C4C5C6179.7°180.0°
N4C4C5H50.3°0.0°
C4N4HN41HN42130.6°180.0°
H5C5C6H60.0°0.0°
C2'C1'O4'H1'117.4°118.5°
C1'C2'O2'C3'116.1°112.7°
C1'C2'O2'H2'122.8°123.6°
C1'C2'C3'H2'122.8°118.2°
C1'C2'O2'H1180.0°180.0°
C1'C2'C3'C4'7.8°21.0°
C1'C2'C3'O3'125.2°97.9°
C1'C2'C3'H3'115.4°139.6°
C2'C1'O4'C4'8.7°40.1°
O4'C1'C2'O2'119.1°155.2°
O4'C1'C2'C3'0.1°37.1°
O4'C1'C2'H2'120.9°81.2°
C1'O4'C4'C3'13.8°26.4°
C1'O4'C4'C5'135.4°145.9°
C1'O4'C4'H4'106.7°93.1°
H1'C1'C2'O2'4.2°36.7°
H1'C1'C2'C3'123.4°81.4°
H1'C1'C2'H2'115.8°160.3°
H1'C1'O4'C4'108.7°78.4°
O2'C2'C3'H2'120.2°123.6°
O2'C2'C3'C4'109.2°139.2°
O2'C2'C3'O3'8.1°20.2°
O2'C2'C3'H3'127.5°102.3°
C3'C2'O2'H163.9°67.3°
C2'C3'C4'O3'119.6°118.8°
C2'C3'C4'H3'121.2°118.6°
C2'C3'O3'H3'121.5°122.6°
C2'C3'C4'O4'13.1°1.9°
C2'C3'C4'C5'135.0°121.4°
C2'C3'C4'H4'107.1°117.6°
C2'C3'O3'H2180.0°61.4°
H2'C2'O2'H157.2°56.4°
H2'C2'C3'C4'130.6°97.2°
H2'C2'C3'O3'112.0°143.8°
H2'C2'C3'H3'7.4°21.4°
C4'C3'O3'H3'123.4°122.6°
C3'C4'O4'C5'121.6°119.5°
C3'C4'O4'H4'120.5°119.5°
C3'C4'C5'H4'120.4°121.0°
C4'C3'O3'H264.9°176.2°
C3'C4'C5'O5'40.8°175.3°
C3'C4'C5'H5'184.5°64.7°
C3'C4'C5'H5'2166.1°55.3°
O3'C3'C4'O4'132.6°120.7°
O3'C3'C4'C5'105.5°119.9°
O3'C3'C4'H4'12.5°1.2°
H3'C3'C4'O4'108.1°116.7°
H3'C3'C4'C5'13.8°2.7°
H3'C3'C4'H4'131.7°123.8°
H3'C3'O3'H258.5°61.2°
O4'C4'C5'H4'120.1°121.0°
O4'C4'C5'O5'78.7°66.7°
O4'C4'C5'H5'1156.0°53.3°
O4'C4'C5'H5'246.6°173.3°
C4'C5'O5'H5'1125.3°120.0°
C4'C5'O5'H5'2125.3°119.9°
C4'C5'H5'1H5'2115.5°120.0°
C4'C5'O5'PA178.7°179.9°
H4'C4'C5'O5'161.2°54.3°
H4'C4'C5'H5'135.9°174.3°
H4'C4'C5'H5'273.6°65.7°
O5'C5'H5'1H5'2115.5°120.0°
C5'O5'PAO1A119.9°55.0°
C5'O5'PAO2A0.1°65.0°
C5'O5'PAO3A117.7°175.0°
H5'1C5'O5'PA53.4°60.0°
H5'2C5'O5'PA56.0°60.0°
O5'PAO1AO2A121.1°120.0°
O5'PAO1AO3A123.2°120.0°
O5'PAO2AO3A120.0°120.0°
O5'PAO2AH2A180.0°60.0°
O5'PAO3APB52.5°165.0°
O1APAO2AO3A117.2°120.0°
O1APAO2AH2A57.1°180.0°
O1APAO3APB177.0°45.0°
O2APAO3APB67.0°75.0°
O3APAO2AH2A60.0°60.0°
PAO3APBO1B64.0°40.0°
PAO3APBO2B56.0°160.0°
PAO3APBO3B178.8°80.1°
O3APBO1BO2B123.8°120.0°
O3APBO1BO3B117.4°120.0°
O3APBO2BO3B121.6°119.9°
O3APBO3BH3B180.0°60.0°
O1BPBO2BO3B117.1°120.0°
O1BPBO3BH3B61.6°180.0°
O2BPBO3BH3B55.2°60.0°
C28C27O33H27118.0°120.1°
C27C28C29O31120.3°120.0°
C27C28C29C32123.1°120.0°
C27C28O31C32122.4°120.0°
C27C28C29O30178.8°59.3°
C27C28C29H29153.5°60.7°
C27C28C29H29256.0°179.3°
C27C28O31P3456.1°160.4°
C27C28C32H32154.7°52.8°
C27C28C32H322180.0°67.2°
C27C28C32H32354.7°172.8°
C28C27O33H3355.9°60.0°
O33C27C28C2958.8°55.0°
O33C27C28O31179.9°175.0°
O33C27C28C3261.8°65.0°
H27C27C28C2962.5°65.0°
H27C27C28O3158.6°55.0°
H27C27C28C32176.9°175.0°
H27C27O33H3362.1°179.9°
C29C28O31C32118.1°120.0°
C28C29O30H291125.3°120.0°
C28C29O30H292125.3°120.0°
C28C29H291H292117.8°120.0°
C28C29O30H30180.0°180.0°
C29C28O31P3463.4°79.6°
C29C28C32H321175.0°67.2°
C29C28C32H32259.8°172.8°
C29C28C32H32365.5°52.8°
O31C28C29O3061.0°60.7°
O31C28C29H291173.8°179.3°
O31C28C29H29264.3°59.3°
O31C28C32H32165.5°172.8°
O31C28C32H32259.8°52.8°
O31C28C32H323174.9°67.2°
C28O31P34O3560.2°52.0°
C28O31P34O36179.1°68.0°
C28O31P34O3762.1°172.0°
C32C28C29O3055.6°179.3°
C32C28C29H29169.6°59.3°
C32C28C29H292179.1°60.7°
C32C28O31P34178.5°40.4°
C28C32H321H322126.4°120.0°
C28C32H321H323116.8°120.0°
C28C32H322H323125.3°120.0°
O30C29H291H292117.8°120.0°
H291C29O30H3054.7°60.0°
H292C29O30H3054.7°60.0°
O31P34O35O36119.6°120.0°
O31P34O35O37123.5°120.0°
O31P34O36O37121.0°119.9°
O31P34O36H36180.0°60.0°
O31P34O37H37180.0°180.0°
H321C32H322H323109.5°120.0°
O35P34O36O37117.7°120.0°
O35P34O36H3658.7°180.0°
O35P34O37H3756.2°60.0°
O36P34O37H3760.5°60.0°
O37P34O36H3659.0°60.0°

222926

PDB entries from 2024-07-24

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