English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

STH

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C8	O8	sing	1.43Å	1.37Å
C8	C1	sing	1.51Å	1.49Å
C8	S7	sing	1.82Å	1.42Å
C8	H8	sing	1.09Å	1.12Å
O8	HO8	sing	0.97Å	0.95Å
C1	C2	doub	1.38Å	1.48Å	Aromatic
C1	C6	sing	1.39Å	1.45Å	Aromatic
C2	C3	sing	1.41Å	1.43Å	Aromatic
C2	O2	sing	1.35Å	1.42Å
C3	C4	doub	1.37Å	1.43Å	Aromatic
C3	H3	sing	1.08Å	1.10Å
C4	C5	sing	1.38Å	1.43Å	Aromatic
C4	H4	sing	1.08Å	1.10Å
C5	C6	doub	1.38Å	1.41Å	Aromatic
C5	H5	sing	1.08Å	1.10Å
C6	H6	sing	1.08Å	1.10Å
C7	O2	sing	1.41Å	1.42Å
C7	N7	sing	1.47Å	1.38Å
C7	S7	sing	1.82Å	1.62Å
C7	H7	sing	1.09Å	1.11Å
N7	HN71	sing	1.01Å	1.02Å
N7	HN72	sing	1.01Å	1.02Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O8	C8	C1	121.7°	109.5°
O8	C8	S7	118.7°	109.5°
O8	C8	H8	78.3°	109.5°
C8	O8	HO8	121.7°	106.8°
C1	C8	S7	119.6°	109.3°
C1	C8	H8	45.8°	109.5°
C8	C1	C2	119.5°	124.5°
C8	C1	C6	122.3°	115.5°
S7	C8	H8	158.3°	109.5°
C8	S7	C7	116.8°	97.6°
C2	C1	C6	118.2°	120.0°
C1	C2	C3	119.5°	118.4°
C1	C2	O2	122.0°	127.7°
C1	C6	C5	121.2°	121.1°
C1	C6	H6	120.8°	119.5°
C3	C2	O2	118.6°	113.9°
C2	C3	C4	120.5°	121.4°
C2	C3	H3	119.8°	119.3°
C2	O2	C7	119.0°	113.6°
C4	C3	H3	119.7°	119.4°
C3	C4	C5	120.6°	119.8°
C3	C4	H4	119.5°	120.1°
C5	C4	H4	119.9°	120.1°
C4	C5	C6	120.1°	119.3°
C4	C5	H5	120.6°	120.3°
C6	C5	H5	119.3°	120.3°
C5	C6	H6	118.1°	119.5°
O2	C7	N7	108.1°	109.7°
O2	C7	S7	116.9°	108.2°
O2	C7	H7	105.5°	109.7°
N7	C7	S7	110.0°	109.7°
N7	C7	H7	113.0°	109.7°
C7	N7	HN71	112.7°	106.7°
C7	N7	HN72	108.1°	106.7°
S7	C7	H7	103.4°	109.8°
HN71	N7	HN72	112.7°	106.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O8	C8	C1	S7	179.5°	120.0°
O8	C8	C1	H8	20.8°	120.1°
O8	C8	S7	H8	138.2°	120.1°
O8	C8	C1	C2	179.4°	103.6°
O8	C8	C1	C6	0.5°	75.0°
O8	C8	S7	C7	167.3°	78.2°
C1	C8	S7	H8	42.2°	119.9°
C1	C8	O8	HO8	180.0°	180.0°
C8	C1	C2	C6	179.0°	178.6°
C8	C1	C2	C3	180.0°	177.2°
C8	C1	C2	O2	0.6°	3.2°
C8	C1	C6	C5	179.9°	177.6°
C8	C1	C6	H6	0.1°	2.4°
C1	C8	S7	C7	12.3°	41.8°
S7	C8	O8	HO8	0.4°	60.2°
S7	C8	C1	C2	1.0°	16.3°
S7	C8	C1	C6	179.9°	165.0°
C8	S7	C7	O2	27.5°	66.6°
C8	S7	C7	N7	151.1°	173.7°
C8	S7	C7	H7	87.9°	53.1°
H8	C8	O8	HO8	165.0°	59.9°
H8	C8	C1	C2	158.6°	136.3°
H8	C8	C1	C6	20.3°	45.0°
H8	C8	S7	C7	54.5°	161.8°
C1	C2	C3	O2	179.4°	179.7°
C1	C2	C3	C4	0.8°	0.9°
C1	C2	C3	H3	179.2°	179.1°
C2	C1	C6	C5	1.0°	1.1°
C2	C1	C6	H6	179.0°	178.9°
C1	C2	O2	C7	15.4°	28.0°
C6	C1	C2	C3	1.1°	1.5°
C6	C1	C2	O2	179.5°	178.2°
C1	C6	C5	C4	0.7°	0.1°
C1	C6	C5	H6	180.0°	180.0°
C1	C6	C5	H5	179.3°	179.9°
C2	C3	C4	H3	180.0°	180.0°
C2	C3	C4	C5	0.5°	0.1°
C2	C3	C4	H4	179.5°	179.8°
C3	C2	O2	C7	164.0°	152.3°
O2	C2	C3	C4	179.8°	178.8°
O2	C2	C3	H3	0.2°	1.2°
C2	O2	C7	N7	153.2°	178.8°
C2	O2	C7	S7	28.5°	61.5°
C2	O2	C7	H7	85.7°	58.3°
C3	C4	C5	H4	180.0°	179.9°
C3	C4	C5	C6	0.4°	0.5°
C3	C4	C5	H5	179.6°	179.4°
H3	C3	C4	C5	179.5°	179.9°
H3	C3	C4	H4	0.5°	0.2°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.4°	179.9°
H4	C4	C5	C6	179.6°	179.4°
H4	C4	C5	H5	0.4°	0.6°
H5	C5	C6	H6	0.7°	0.0°
O2	C7	N7	S7	128.7°	118.8°
O2	C7	N7	H7	116.4°	120.6°
O2	C7	S7	H7	115.4°	119.7°
O2	C7	N7	HN71	54.7°	60.6°
O2	C7	N7	HN72	180.0°	174.4°
N7	C7	S7	H7	120.9°	120.6°
C7	N7	HN71	HN72	122.7°	113.8°
S7	C7	N7	HN71	176.6°	179.4°
S7	C7	N7	HN72	51.3°	66.9°
H7	C7	N7	HN71	61.6°	60.0°
H7	C7	N7	HN72	63.6°	53.8°

225158

PDB entries from 2024-09-18

PDB statistics

PDBj update info

Contact PDBj

numon