ST5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C' | O1' | doub | 1.22Å | 1.25Å | |
| C' | O2' | sing | 1.35Å | 1.25Å | |
| C' | C1 | sing | 1.47Å | 1.40Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1 | C2 | doub | 1.40Å | 1.39Å | Aromatic |
| C1 | C6 | sing | 1.40Å | 1.39Å | Aromatic |
| C2 | C3 | sing | 1.38Å | 1.39Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.10Å | |
| C3 | N3 | sing | 1.40Å | 1.39Å | |
| C3 | C4 | doub | 1.40Å | 1.40Å | Aromatic |
| N3 | C3' | sing | 1.35Å | 1.33Å | |
| N3 | HN3 | sing | 0.97Å | 0.98Å | |
| C3' | O3 | doub | 1.21Å | 1.23Å | |
| C3' | CM3 | sing | 1.51Å | 1.51Å | |
| CM3 | O3' | sing | 1.43Å | 1.42Å | |
| CM3 | HM31 | sing | 1.09Å | 0.98Å | |
| CM3 | HM32 | sing | 1.09Å | 0.98Å | |
| O3' | HO3 | sing | 0.97Å | 0.96Å | |
| C4 | N4 | sing | 1.40Å | 1.38Å | |
| C4 | C5 | sing | 1.39Å | 1.39Å | Aromatic |
| N4 | C4' | sing | 1.35Å | 1.33Å | |
| N4 | HN4 | sing | 0.97Å | 0.98Å | |
| C4' | O4 | doub | 1.21Å | 1.24Å | |
| C4' | CM4 | sing | 1.51Å | 1.52Å | |
| CM4 | HM41 | sing | 1.09Å | 1.11Å | |
| CM4 | HM42 | sing | 1.09Å | 1.12Å | |
| CM4 | HM43 | sing | 1.09Å | 1.12Å | |
| C5 | C6 | doub | 1.38Å | 1.39Å | Aromatic |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1' | C' | O2' | 122.1° | 120.0° |
| O1' | C' | C1 | 119.2° | 120.0° |
| O2' | C' | C1 | 118.7° | 120.0° |
| C' | O2' | HO2' | 122.0° | 120.0° |
| C' | C1 | C2 | 120.8° | 120.0° |
| C' | C1 | C6 | 120.8° | 120.1° |
| C2 | C1 | C6 | 118.4° | 119.9° |
| C1 | C2 | C3 | 121.4° | 119.8° |
| C1 | C2 | H2 | 119.3° | 120.0° |
| C1 | C6 | C5 | 120.9° | 120.1° |
| C1 | C6 | H6 | 119.7° | 120.0° |
| C3 | C2 | H2 | 119.3° | 120.1° |
| C2 | C3 | N3 | 119.3° | 120.0° |
| C2 | C3 | C4 | 119.3° | 120.0° |
| N3 | C3 | C4 | 121.2° | 120.0° |
| C3 | N3 | C3' | 120.0° | 120.0° |
| C3 | N3 | HN3 | 119.3° | 120.0° |
| C3 | C4 | N4 | 121.7° | 120.0° |
| C3 | C4 | C5 | 119.3° | 120.1° |
| C3' | N3 | HN3 | 119.9° | 120.0° |
| N3 | C3' | O3 | 122.9° | 120.0° |
| N3 | C3' | CM3 | 117.4° | 120.1° |
| O3 | C3' | CM3 | 119.7° | 119.9° |
| C3' | CM3 | O3' | 109.8° | 109.6° |
| C3' | CM3 | HM31 | 109.5° | 109.4° |
| C3' | CM3 | HM32 | 109.4° | 109.5° |
| O3' | CM3 | HM31 | 109.4° | 109.4° |
| O3' | CM3 | HM32 | 109.4° | 109.5° |
| CM3 | O3' | HO3 | 110.9° | 106.9° |
| HM31 | CM3 | HM32 | 109.4° | 109.4° |
| N4 | C4 | C5 | 119.0° | 120.0° |
| C4 | N4 | C4' | 121.5° | 120.0° |
| C4 | N4 | HN4 | 118.9° | 120.0° |
| C4 | C5 | C6 | 120.7° | 120.1° |
| C4 | C5 | H5 | 119.7° | 120.0° |
| C4' | N4 | HN4 | 119.6° | 120.0° |
| N4 | C4' | O4 | 121.8° | 120.0° |
| N4 | C4' | CM4 | 119.4° | 120.0° |
| O4 | C4' | CM4 | 118.7° | 120.0° |
| C4' | CM4 | HM41 | 119.4° | 109.5° |
| C4' | CM4 | HM42 | 108.7° | 109.5° |
| C4' | CM4 | HM43 | 108.6° | 109.5° |
| HM41 | CM4 | HM42 | 108.6° | 109.5° |
| HM41 | CM4 | HM43 | 108.7° | 109.4° |
| HM42 | CM4 | HM43 | 101.3° | 109.5° |
| C6 | C5 | H5 | 119.6° | 119.9° |
| C5 | C6 | H6 | 119.4° | 119.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1' | C' | O2' | C1 | 178.5° | 179.9° |
| O1' | C' | O2' | HO2' | 180.0° | 0.0° |
| O1' | C' | C1 | C2 | 161.7° | 0.0° |
| O1' | C' | C1 | C6 | 19.8° | 180.0° |
| O2' | C' | C1 | C2 | 19.8° | 180.0° |
| O2' | C' | C1 | C6 | 158.8° | 0.1° |
| C1 | C' | O2' | HO2' | 1.5° | 179.9° |
| C' | C1 | C2 | C6 | 178.6° | 180.0° |
| C' | C1 | C2 | C3 | 178.7° | 179.7° |
| C' | C1 | C2 | H2 | 1.3° | 0.0° |
| C' | C1 | C6 | C5 | 178.7° | 180.0° |
| C' | C1 | C6 | H6 | 1.3° | 0.0° |
| C1 | C2 | C3 | H2 | 180.0° | 179.7° |
| C1 | C2 | C3 | N3 | 176.2° | 180.0° |
| C1 | C2 | C3 | C4 | 0.3° | 0.6° |
| C2 | C1 | C6 | C5 | 0.1° | 0.0° |
| C2 | C1 | C6 | H6 | 180.0° | 180.0° |
| C6 | C1 | C2 | C3 | 0.1° | 0.3° |
| C6 | C1 | C2 | H2 | 179.9° | 180.0° |
| C1 | C6 | C5 | C4 | 0.2° | 0.0° |
| C1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C1 | C6 | C5 | H5 | 179.8° | 180.0° |
| C2 | C3 | N3 | C4 | 176.4° | 179.4° |
| C2 | C3 | N3 | C3' | 60.5° | 24.6° |
| C2 | C3 | N3 | HN3 | 130.0° | 155.4° |
| C2 | C3 | C4 | N4 | 177.7° | 179.7° |
| C2 | C3 | C4 | C5 | 0.4° | 0.6° |
| H2 | C2 | C3 | N3 | 3.8° | 0.3° |
| H2 | C2 | C3 | C4 | 179.8° | 179.7° |
| C3 | N3 | C3' | HN3 | 169.5° | 180.0° |
| C3 | N3 | C3' | O3 | 34.1° | 5.9° |
| C3 | N3 | C3' | CM3 | 147.4° | 174.1° |
| N3 | C3 | C4 | N4 | 6.0° | 0.3° |
| N3 | C3 | C4 | C5 | 176.0° | 180.0° |
| C4 | C3 | N3 | C3' | 115.9° | 154.8° |
| C4 | C3 | N3 | HN3 | 53.7° | 25.2° |
| C3 | C4 | N4 | C5 | 178.1° | 179.7° |
| C3 | C4 | N4 | C4' | 59.3° | 145.6° |
| C3 | C4 | N4 | HN4 | 120.8° | 34.5° |
| C3 | C4 | C5 | C6 | 0.4° | 0.3° |
| C3 | C4 | C5 | H5 | 179.6° | 179.7° |
| N3 | C3' | O3 | CM3 | 178.4° | 180.0° |
| N3 | C3' | CM3 | O3' | 178.6° | 180.0° |
| N3 | C3' | CM3 | HM31 | 58.5° | 60.0° |
| N3 | C3' | CM3 | HM32 | 61.4° | 59.9° |
| HN3 | N3 | C3' | O3 | 135.4° | 174.1° |
| HN3 | N3 | C3' | CM3 | 43.1° | 5.9° |
| O3 | C3' | CM3 | O3' | 2.9° | 0.1° |
| O3 | C3' | CM3 | HM31 | 123.0° | 120.0° |
| O3 | C3' | CM3 | HM32 | 117.1° | 120.0° |
| C3' | CM3 | O3' | HM31 | 120.1° | 119.9° |
| C3' | CM3 | O3' | HM32 | 120.1° | 120.1° |
| C3' | CM3 | HM31 | HM32 | 119.9° | 120.0° |
| C3' | CM3 | O3' | HO3 | 179.4° | 179.9° |
| O3' | CM3 | HM31 | HM32 | 119.8° | 120.0° |
| HM31 | CM3 | O3' | HO3 | 60.5° | 60.0° |
| HM32 | CM3 | O3' | HO3 | 59.3° | 59.9° |
| C4 | N4 | C4' | HN4 | 180.0° | 179.9° |
| C4 | N4 | C4' | O4 | 2.3° | 4.5° |
| C4 | N4 | C4' | CM4 | 180.0° | 175.4° |
| N4 | C4 | C5 | C6 | 177.7° | 180.0° |
| N4 | C4 | C5 | H5 | 2.3° | 0.0° |
| C5 | C4 | N4 | C4' | 118.8° | 34.8° |
| C5 | C4 | N4 | HN4 | 61.2° | 145.1° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 179.8° | 180.0° |
| N4 | C4' | O4 | CM4 | 177.7° | 179.9° |
| N4 | C4' | CM4 | HM41 | 180.0° | 180.0° |
| N4 | C4' | CM4 | HM42 | 54.7° | 59.9° |
| N4 | C4' | CM4 | HM43 | 54.7° | 60.1° |
| HN4 | N4 | C4' | O4 | 177.7° | 175.3° |
| HN4 | N4 | C4' | CM4 | 0.0° | 4.7° |
| O4 | C4' | CM4 | HM41 | 2.2° | 0.1° |
| O4 | C4' | CM4 | HM42 | 123.0° | 120.0° |
| O4 | C4' | CM4 | HM43 | 127.5° | 120.0° |
| C4' | CM4 | HM41 | HM42 | 125.3° | 120.1° |
| C4' | CM4 | HM41 | HM43 | 125.3° | 120.0° |
| C4' | CM4 | HM42 | HM43 | 114.3° | 120.0° |
| HM41 | CM4 | HM42 | HM43 | 114.3° | 119.9° |
| H5 | C5 | C6 | H6 | 0.2° | 0.0° |
