Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

SRY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C11N11sing1.46Å1.52Å
C11C21sing1.53Å1.54Å
C11C61sing1.53Å1.51Å
C11H11sing1.09Å1.10Å
N11CA1sing1.37Å1.32Å
N11HN11sing0.97Å1.00Å
CA1NB1sing1.37Å1.28Å
CA1NC1doub1.30Å1.29Å
NB1HB11sing0.97Å1.00Å
NB1HB12sing0.97Å1.00Å
NC1HC11sing0.97Å1.00Å
C21O21sing1.43Å1.40Å
C21C31sing1.53Å1.53Å
C21H21sing1.09Å1.10Å
O21HO21sing0.97Å0.95Å
C31N31sing1.47Å1.48Å
C31C41sing1.53Å1.52Å
C31H31sing1.09Å1.10Å
N31CD1sing1.38Å1.29Å
N31HN31sing0.97Å1.00Å
CD1NE1sing1.37Å1.31Å
CD1NF1doub1.30Å1.28Å
NE1HE11sing0.97Å1.00Å
NE1HE12sing0.97Å1.00Å
NF1HF11sing0.97Å1.00Å
C41O41sing1.43Å1.42Å
C41C51sing1.53Å1.56Å
C41H41sing1.09Å1.10Å
O41C12sing1.43Å1.44Å
C51O51sing1.43Å1.43Å
C51C61sing1.53Å1.54Å
C51H51sing1.09Å1.10Å
O51HO51sing0.97Å0.95Å
C61O61sing1.43Å1.44Å
C61H61sing1.09Å1.10Å
O61HO61sing0.97Å0.95Å
C12C22sing1.54Å1.52Å
C12O42sing1.44Å1.41Å
C12H12sing1.09Å1.10Å
C22C32sing1.54Å1.47Å
C22O13sing1.43Å1.32Å
C22H22sing1.09Å1.10Å
C32O32sing1.43Å1.43Å
C32CG2sing1.51Å1.51Å
C32C42sing1.54Å1.47Å
O32HO32sing0.97Å0.95Å
CG2OG2doub1.21Å1.21Å
CG2HG21sing1.08Å1.08Å
C42CH2sing1.53Å1.50Å
C42O42sing1.44Å1.42Å
C42H42sing1.09Å1.10Å
CH2HH21sing1.09Å1.10Å
CH2HH22sing1.09Å1.10Å
CH2HH23sing1.09Å1.10Å
O13C13sing1.43Å1.38Å
C13C23sing1.53Å1.51Å
C13O53sing1.43Å1.35Å
C13H13sing1.09Å1.10Å
C23N23sing1.47Å1.42Å
C23C33sing1.53Å1.39Å
C23H23sing1.09Å1.10Å
N23CI3sing1.47Å1.45Å
N23HN23sing1.01Å1.00Å
CI3HI31sing1.09Å1.10Å
CI3HI32sing1.09Å1.10Å
CI3HI33sing1.09Å1.10Å
C33O33sing1.43Å1.41Å
C33C43sing1.53Å1.51Å
C33H33sing1.09Å1.10Å
O33HO33sing0.97Å0.95Å
C43O43sing1.43Å1.40Å
C43C53sing1.53Å1.49Å
C43H43sing1.09Å1.10Å
O43HO43sing0.97Å0.95Å
C53O53sing1.43Å1.40Å
C53C63sing1.53Å1.54Å
C53H53sing1.09Å1.10Å
C63O63sing1.43Å1.42Å
C63H631sing1.09Å1.10Å
C63H632sing1.09Å1.10Å
O63HO63sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N11C11C21110.1°109.5°
N11C11C61109.5°109.5°
N11C11H11108.9°109.5°
C11N11CA1112.6°120.0°
C11N11HN11123.7°120.0°
C21C11C61109.2°109.5°
C21C11H11109.3°109.5°
C11C21O21107.1°109.5°
C11C21C31112.4°109.5°
C11C21H21108.4°109.5°
C61C11H11109.8°109.4°
C11C61C51109.6°109.5°
C11C61O61109.0°109.5°
C11C61H61109.9°109.5°
CA1N11HN11123.7°120.0°
N11CA1NB1115.5°120.0°
N11CA1NC1122.0°120.0°
NB1CA1NC1122.4°120.0°
CA1NB1HB11110.7°120.0°
CA1NB1HB12124.7°120.0°
CA1NC1HC11110.6°120.0°
HB11NB1HB12124.7°120.0°
O21C21C31107.3°109.4°
O21C21H21113.4°109.5°
C21O21HO21109.5°114.0°
C31C21H21108.3°109.5°
C21C31N31113.8°109.5°
C21C31C41108.1°109.4°
C21C31H31107.4°109.5°
N31C31C41109.1°109.5°
N31C31H31106.3°109.5°
C31N31CD1111.6°120.0°
C31N31HN31124.2°120.0°
C41C31H31112.3°109.5°
C31C41O41107.8°109.4°
C31C41C51110.2°109.5°
C31C41H41110.6°109.5°
CD1N31HN31124.2°120.0°
N31CD1NE1125.0°120.0°
N31CD1NF1115.2°120.0°
NE1CD1NF1119.8°120.0°
CD1NE1HE11112.7°120.0°
CD1NE1HE12123.6°120.0°
CD1NF1HF11112.6°120.1°
HE11NE1HE12123.7°120.0°
O41C41C51110.8°109.5°
O41C41H41109.9°109.5°
C41O41C12111.2°114.0°
C51C41H41107.5°109.4°
C41C51O51109.4°109.5°
C41C51C61109.2°109.5°
C41C51H51109.7°109.4°
O41C12C22105.0°110.4°
O41C12O42106.8°110.4°
O41C12H12113.4°110.4°
O51C51C61109.4°109.5°
O51C51H51109.5°109.5°
C51O51HO51109.5°114.0°
C61C51H51109.7°109.5°
C51C61O61110.1°109.4°
C51C61H61108.8°109.5°
O61C61H61109.5°109.5°
C61O61HO61109.5°114.0°
C22C12O42107.7°104.8°
C22C12H12112.6°110.4°
C12C22C32101.1°104.1°
C12C22O13110.5°110.5°
C12C22H22118.9°110.5°
O42C12H12111.0°110.4°
C12O42C42104.3°105.3°
C32C22O13120.7°110.5°
C32C22H22108.4°110.6°
C22C32O32107.2°110.5°
C22C32CG2109.0°110.5°
C22C32C42108.7°104.1°
O13C22H2298.4°110.5°
C22O13C13112.7°114.0°
O32C32CG2112.1°110.5°
O32C32C42108.4°110.5°
C32O32HO32109.5°114.0°
CG2C32C42111.2°110.6°
C32CG2OG2124.9°120.0°
C32CG2HG21117.5°120.0°
C32C42CH2118.4°110.4°
C32C42O42104.0°104.8°
C32C42H42108.1°110.4°
OG2CG2HG21117.6°119.9°
CH2C42O42111.6°110.4°
CH2C42H4299.9°110.3°
C42CH2HH21109.5°109.4°
C42CH2HH22109.5°109.5°
C42CH2HH23109.5°109.4°
O42C42H42115.3°110.4°
HH21CH2HH22109.4°109.5°
HH21CH2HH23109.4°109.5°
HH22CH2HH23109.5°109.5°
O13C13C23115.4°109.5°
O13C13O53108.0°109.4°
O13C13H13107.2°109.5°
C23C13O53111.5°109.4°
C23C13H13103.3°109.5°
C13C23N23108.7°109.5°
C13C23C33111.1°109.2°
C13C23H23108.7°109.5°
O53C13H13111.4°109.5°
C13O53C53105.6°114.1°
N23C23C33108.9°109.5°
N23C23H23110.9°109.6°
C23N23CI3107.1°111.0°
C23N23HN23110.3°111.0°
C33C23H23108.5°109.6°
C23C33O33107.6°109.5°
C23C33C43110.4°109.0°
C23C33H33110.1°109.5°
CI3N23HN23110.3°111.0°
N23CI3HI31109.5°109.5°
N23CI3HI32109.5°109.5°
N23CI3HI33109.5°109.4°
HI31CI3HI32109.4°109.5°
HI31CI3HI33109.5°109.4°
HI32CI3HI33109.5°109.5°
O33C33C43109.5°109.6°
O33C33H33111.0°109.6°
C33O33HO33109.5°114.0°
C43C33H33108.3°109.6°
C33C43O43109.0°109.5°
C33C43C53109.8°109.2°
C33C43H43109.3°109.5°
O43C43C53108.3°109.5°
O43C43H43110.6°109.5°
C43O43HO43109.5°114.0°
C53C43H43109.9°109.6°
C43C53O53107.8°109.4°
C43C53C63111.3°109.5°
C43C53H53108.8°109.5°
O53C53C63107.7°109.4°
O53C53H53112.4°109.5°
C63C53H53108.9°109.5°
C53C63O63109.2°109.5°
C53C63H631109.5°109.5°
C53C63H632109.6°109.4°
O63C63H631109.6°109.5°
O63C63H632109.6°109.5°
C63O63HO63109.5°114.0°
H631C63H632109.3°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N11C11C21C61120.3°120.0°
N11C11C21H11119.6°120.0°
N11C11C61H11119.6°120.0°
C11N11CA1HN11180.0°179.9°
C11N11CA1NB180.0°0.0°
C11N11CA1NC1100.2°180.0°
N11C11C21O2163.3°60.0°
N11C11C21C31179.0°180.0°
N11C11C21H2159.4°60.0°
N11C11C61C51179.1°180.0°
N11C11C61O6160.3°60.0°
N11C11C61H6159.6°60.0°
C21C11C61H11119.8°120.0°
C21C11N11CA1136.6°155.0°
C21C11N11HN1143.4°25.1°
C11C21O21C31120.9°120.0°
C11C21O21H21119.6°120.0°
C11C21C31H21119.7°120.0°
C11C21O21HO21108.8°60.0°
C11C21C31N31179.8°180.0°
C11C21C31C4158.4°60.0°
C11C21C31H3162.9°60.0°
C21C11C61C5158.5°60.0°
C21C11C61O61179.0°180.0°
C21C11C61H6161.0°60.0°
C61C11N11CA1103.3°85.0°
C61C11N11HN1176.6°95.0°
C61C11C21O21176.4°180.0°
C61C11C21C3158.8°60.0°
C61C11C21H2160.9°60.0°
C11C61C51C4160.2°60.0°
C11C61C51O51179.8°180.0°
C11C61C51O61119.9°120.0°
C11C61C51H61120.2°120.0°
C11C61C51H5160.1°60.0°
C11C61O61H61120.2°120.0°
C11C61O61HO6175.9°180.0°
H11C11N11CA116.8°35.0°
H11C11N11HN11163.2°145.1°
H11C11C21O2156.2°60.0°
H11C11C21C3161.4°60.0°
H11C11C21H21179.0°180.0°
H11C11C61C5161.3°60.0°
H11C11C61O6159.2°60.0°
H11C11C61H61179.2°180.0°
N11CA1NB1NC1179.7°180.0°
N11CA1NB1HB11180.0°0.0°
N11CA1NB1HB120.1°180.0°
N11CA1NC1HC110.1°0.0°
HN11N11CA1NB1100.0°180.0°
HN11N11CA1NC179.8°0.1°
CA1NB1HB11HB12180.0°179.9°
NB1CA1NC1HC11179.9°180.0°
NC1CA1NB1HB110.3°180.0°
NC1CA1NB1HB12179.7°0.0°
O21C21C31H21122.8°120.0°
O21C21C31N3162.7°60.0°
O21C21C31C41175.9°180.0°
O21C21C31H3154.6°60.0°
C31C21O21HO21130.3°180.0°
C21C31N31C41120.8°120.0°
C21C31N31H31117.9°120.0°
C21C31C41H31118.2°120.0°
C21C31N31CD128.2°85.0°
C21C31N31HN31151.8°95.0°
C21C31C41O41179.8°180.0°
C21C31C41C5158.7°60.0°
C21C31C41H4159.9°60.0°
H21C21O21HO2110.7°60.0°
H21C21C31N3160.1°60.0°
H21C21C31C4161.3°60.0°
H21C21C31H31177.4°180.0°
N31C31C41H31117.5°120.1°
C31N31CD1HN31180.0°180.0°
C31N31CD1NE111.7°180.0°
C31N31CD1NF1167.1°0.0°
N31C31C41O4155.9°60.0°
N31C31C41C51177.0°180.0°
N31C31C41H4164.3°60.0°
C41C31N31CD192.6°155.0°
C41C31N31HN3187.4°24.9°
C31C41O41C51120.7°120.0°
C31C41O41H41120.6°120.0°
C31C41C51H41120.6°120.0°
C31C41O41C12120.6°150.0°
C31C41C51O51179.6°179.9°
C31C41C51C6160.8°60.0°
C31C41C51H5159.4°60.0°
H31C31N31CD1146.1°35.0°
H31C31N31HN3133.9°145.0°
H31C31C41O4161.6°60.0°
H31C31C41C5159.5°60.0°
H31C31C41H41178.1°180.0°
N31CD1NE1NF1178.7°180.0°
N31CD1NE1HE11180.0°0.0°
N31CD1NE1HE120.0°180.0°
N31CD1NF1HF110.5°0.0°
HN31N31CD1NE1168.4°0.0°
HN31N31CD1NF112.9°180.0°
CD1NE1HE11HE12180.0°180.0°
NE1CD1NF1HF11179.3°180.0°
NF1CD1NE1HE111.3°180.0°
NF1CD1NE1HE12178.7°0.0°
O41C41C51H41120.2°120.0°
O41C41C51O5160.3°60.0°
O41C41C51C61179.9°180.0°
O41C41C51H5159.8°60.0°
C41O41C12C22175.2°175.0°
C41O41C12O4270.7°69.6°
C41O41C12H1251.9°52.8°
C51C41O41C12118.7°90.0°
C41C51O51C61119.6°120.0°
C41C51O51H51120.2°120.0°
C41C51C61H51120.2°119.9°
C41C51O51HO51106.7°180.0°
C41C51C61O61180.0°180.0°
C41C51C61H6160.0°60.1°
H41C41O41C120.0°30.0°
H41C41C51O5159.9°60.0°
H41C41C51C6159.8°60.0°
H41C41C51H51180.0°180.0°
O41C12C22O42113.5°118.8°
O41C12C22H12123.9°122.3°
O41C12O42H12124.1°122.3°
O41C12C22C3295.4°94.8°
O41C12C22O13135.7°146.5°
O41C12C22H2223.0°23.9°
O41C12O42C4277.0°78.3°
O51C51C61H51120.1°120.0°
O51C51C61O6160.3°60.0°
O51C51C61H6159.6°60.0°
C61C51O51HO51133.7°59.9°
C51C61O61H61119.5°120.0°
C51C61O61HO6144.4°60.0°
H51C51O51HO5113.5°60.1°
H51C51C61O6159.8°60.0°
H51C51C61H61179.8°180.0°
H61C61O61HO61163.9°60.0°
C22C12O42H12123.6°118.9°
C12C22C32O13122.1°118.6°
C12C22C32H22125.7°118.7°
C12C22O13H22125.3°122.6°
C12C22C32O32111.8°118.6°
C12C22C32CG2126.6°118.8°
C12C22C32C425.3°0.0°
C22C12O42C4235.3°40.5°
C12C22O13C1356.6°96.2°
O42C12C22C3218.1°24.0°
O42C12C22O13110.8°94.7°
O42C12C22H22136.5°142.7°
C12O42C42C3237.5°40.5°
C12O42C42CH2166.3°159.4°
C12O42C42H4280.6°78.4°
H12C12C22C32140.8°142.9°
H12C12C22O1311.8°24.2°
H12C12C22H22100.9°98.4°
H12C12O42C42158.9°159.4°
C32C22O13H22117.3°122.7°
C22C32O32CG2119.6°122.6°
C22C32O32C42117.2°114.6°
C22C32CG2C42119.8°114.7°
C22C32O32HO3232.4°180.0°
C22C32CG2OG2177.1°120.0°
C22C32CG2HG213.0°60.0°
C22C32C42CH2151.0°142.8°
C22C32C42O4226.5°23.9°
C22C32C42H4296.6°94.9°
C32C22O13C13174.1°149.1°
O13C22C32O3210.4°0.0°
O13C22C32CG2111.2°122.6°
O13C22C32C42127.4°118.6°
C22O13C13C23103.6°164.9°
C22O13C13O53131.0°75.2°
C22O13C13H1310.9°44.8°
H22C22C32O32122.5°122.7°
H22C22C32CG20.9°0.1°
H22C22C32C42120.5°118.7°
H22C22O13C1368.6°26.4°
O32C32CG2C42121.6°122.6°
O32C32CG2OG264.4°117.4°
O32C32CG2HG21115.6°62.7°
O32C32C42CH234.7°24.2°
O32C32C42O4289.8°94.7°
O32C32C42H42147.1°146.4°
CG2C32O32HO32152.1°57.3°
C32CG2OG2HG21180.0°180.0°
CG2C32C42CH289.0°98.4°
CG2C32C42O42146.5°142.7°
CG2C32C42H4223.4°23.8°
C42C32O32HO3284.8°65.4°
C42C32CG2OG257.2°5.2°
C42C32CG2HG21122.8°174.7°
C32C42CH2O42120.7°115.4°
C32C42CH2H42116.8°122.3°
C32C42O42H42118.2°118.9°
C32C42CH2HH2168.4°60.0°
C32C42CH2HH22171.6°180.0°
C32C42CH2HH2351.5°60.0°
CH2C42O42H42113.1°122.2°
C42CH2HH21HH22120.0°120.0°
C42CH2HH21HH23120.0°119.9°
C42CH2HH22HH23120.0°120.0°
O42C42CH2HH21170.9°175.4°
O42C42CH2HH2250.9°64.6°
O42C42CH2HH2369.2°55.4°
H42C42CH2HH2148.4°62.3°
H42C42CH2HH2271.6°57.7°
H42C42CH2HH23168.4°177.7°
HH21CH2HH22HH23120.0°120.0°
O13C13C23O53123.6°119.9°
O13C13C23H13116.6°120.1°
O13C13O53H13117.4°120.0°
O13C13C23N2355.0°57.6°
O13C13C23C3364.8°62.3°
O13C13C23H23175.8°177.7°
O13C13O53C5359.9°58.8°
C23C13O53H13114.9°120.0°
C13C23N23C33121.2°119.7°
C13C23N23H23119.5°120.1°
C13C23C33H23119.5°120.0°
C13C23N23CI392.9°85.0°
C13C23N23HN2327.1°39.0°
C13C23C33O33167.2°176.9°
C13C23C33C4347.7°57.0°
C13C23C33H3371.7°62.9°
C23C13O53C5367.9°61.2°
O53C13C23N23178.6°177.5°
O53C13C23C3358.8°57.6°
O53C13C23H2360.5°62.4°
C13O53C53C4369.6°61.2°
C13O53C53C63170.2°178.9°
C13O53C53H5350.3°58.8°
H13C13C23N2361.6°62.5°
H13C13C23C33178.5°177.6°
H13C13C23H2359.2°57.6°
H13C13O53C53177.3°178.8°
N23C23C33H23120.8°120.2°
C23N23CI3HN23120.0°124.0°
C23N23CI3HI31164.1°60.0°
C23N23CI3HI3275.9°60.0°
C23N23CI3HI3344.1°180.0°
N23C23C33O3373.1°63.3°
N23C23C33C43167.4°176.8°
N23C23C33H3347.9°56.9°
C33C23N23CI3145.9°155.3°
C33C23N23HN2394.1°80.7°
C23C33O33C43120.0°119.5°
C23C33O33H33120.5°120.2°
C23C33C43H33120.6°119.9°
C23C33O33HO3391.8°180.0°
C23C33C43O43169.4°176.9°
C23C33C43C5351.0°57.0°
C23C33C43H4369.6°63.0°
H23C23N23CI326.6°35.1°
H23C23N23HN23146.6°159.1°
H23C23C33O3347.7°56.9°
H23C23C33C4371.7°63.0°
H23C23C33H33168.8°177.1°
N23CI3HI31HI32120.0°120.0°
N23CI3HI31HI33120.0°119.9°
N23CI3HI32HI33120.0°120.0°
HN23N23CI3HI3144.1°176.0°
HN23N23CI3HI32164.1°64.0°
HN23N23CI3HI3375.9°56.0°
HI31CI3HI32HI33120.0°120.0°
O33C33C43H33121.1°120.3°
O33C33C43O4372.2°63.2°
O33C33C43C53169.3°176.9°
O33C33C43H4348.7°56.9°
C43C33O33HO3328.2°60.4°
C33C43O43C53119.4°119.7°
C33C43O43H43120.1°120.1°
C33C43C53H43120.2°119.9°
C33C43O43HO43145.3°180.0°
C33C43C53O5361.3°57.6°
C33C43C53C63179.2°177.6°
C33C43C53H5360.8°62.3°
H33C33O33HO33147.6°59.8°
H33C33C43O4348.9°57.1°
H33C33C43C5369.6°62.9°
H33C33C43H43169.8°177.2°
O43C43C53H43121.0°120.1°
O43C43C53O53179.8°177.5°
O43C43C53C6362.0°62.5°
O43C43C53H5358.1°57.6°
C53C43O43HO4395.4°60.3°
C43C53O53C63120.2°119.9°
C43C53O53H53119.8°120.0°
C43C53C63H53119.9°120.1°
C43C53C63O6333.7°175.0°
C43C53C63H63186.3°65.0°
C43C53C63H632153.8°55.1°
H43C43O43HO4325.1°59.9°
H43C43C53O5358.9°62.3°
H43C43C53C6359.0°57.6°
H43C43C53H53179.0°177.7°
O53C53C63H53122.1°120.0°
O53C53C63O6384.2°65.1°
O53C53C63H631155.8°54.9°
O53C53C63H63235.9°174.9°
C53C63O63H631120.0°120.1°
C53C63O63H632120.1°120.0°
C53C63H631H632120.1°120.0°
C53C63O63HO63151.3°179.9°
H53C53C63O63153.7°54.9°
H53C53C63H63133.7°175.0°
H53C53C63H63286.2°65.0°
O63C63H631H632120.1°120.0°
H631C63O63HO6388.7°60.0°
H632C63O63HO6331.2°59.9°

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon