SRA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | sing | 1.61Å | 1.55Å | |
P | S2P | doub | 1.86Å | 2.12Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
P | O5' | sing | 1.61Å | 1.61Å | |
OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.53Å | |
C5' | H5' | sing | 1.09Å | 1.09Å | |
C5' | H5'' | sing | 1.09Å | 1.09Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.09Å | |
O4' | C1' | sing | 1.44Å | 1.43Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.09Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | H2' | sing | 1.09Å | 1.09Å | |
C1' | N9 | sing | 1.46Å | 1.48Å | |
C1' | H1' | sing | 1.09Å | 1.09Å | |
N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.29Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.09Å | |
N7 | C5 | sing | 1.35Å | 1.40Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.40Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.33Å | |
C6 | N1 | doub | 1.33Å | 1.34Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.01Å | |
N6 | HN62 | sing | 0.97Å | 1.01Å | |
N1 | C2 | sing | 1.32Å | 1.33Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.33Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.09Å | |
N3 | C4 | sing | 1.33Å | 1.35Å | Aromatic |
O2' | HO2' | sing | 0.97Å | 0.96Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | S2P | 121.4° | 109.4° |
OP1 | P | OP3 | 107.7° | 109.5° |
OP1 | P | O5' | 107.8° | 109.5° |
P | OP1 | HOP1 | 121.4° | 106.8° |
S2P | P | OP3 | 108.0° | 109.5° |
S2P | P | O5' | 108.0° | 109.5° |
OP3 | P | O5' | 102.2° | 109.5° |
P | OP3 | HOP3 | 107.7° | 106.8° |
P | O5' | C5' | 120.6° | 106.8° |
O5' | C5' | C4' | 111.7° | 109.5° |
O5' | C5' | H5' | 109.1° | 109.4° |
O5' | C5' | H5'' | 109.0° | 109.5° |
C4' | C5' | H5' | 108.9° | 109.5° |
C4' | C5' | H5'' | 109.0° | 109.5° |
C5' | C4' | O4' | 111.6° | 110.4° |
C5' | C4' | C3' | 111.4° | 110.5° |
C5' | C4' | H4' | 109.6° | 110.3° |
H5' | C5' | H5'' | 109.1° | 109.5° |
O4' | C4' | C3' | 105.0° | 104.8° |
O4' | C4' | H4' | 109.4° | 110.4° |
C4' | O4' | C1' | 110.4° | 105.3° |
C3' | C4' | H4' | 109.8° | 110.3° |
C4' | C3' | O3' | 112.2° | 110.6° |
C4' | C3' | C2' | 101.9° | 104.1° |
C4' | C3' | H3' | 109.9° | 110.5° |
O4' | C1' | C2' | 106.1° | 104.9° |
O4' | C1' | N9 | 111.3° | 110.4° |
O4' | C1' | H1' | 109.5° | 110.4° |
O3' | C3' | C2' | 111.6° | 110.5° |
O3' | C3' | H3' | 111.0° | 110.4° |
C3' | O3' | HO3' | 112.2° | 106.8° |
C2' | C3' | H3' | 110.0° | 110.6° |
C3' | C2' | C1' | 103.4° | 104.0° |
C3' | C2' | O2' | 111.4° | 110.5° |
C3' | C2' | H2' | 109.9° | 110.5° |
C1' | C2' | O2' | 111.3° | 110.8° |
C1' | C2' | H2' | 109.9° | 110.4° |
C2' | C1' | N9 | 110.9° | 110.4° |
C2' | C1' | H1' | 109.4° | 110.3° |
O2' | C2' | H2' | 110.8° | 110.5° |
C2' | O2' | HO2' | 107.3° | 106.8° |
N9 | C1' | H1' | 109.5° | 110.3° |
C1' | N9 | C8 | 129.8° | 126.2° |
C1' | N9 | C4 | 126.6° | 126.3° |
C8 | N9 | C4 | 103.6° | 107.5° |
N9 | C8 | N7 | 117.5° | 109.9° |
N9 | C8 | H8 | 121.3° | 125.0° |
N9 | C4 | C5 | 106.5° | 106.0° |
N9 | C4 | N3 | 126.4° | 134.9° |
N7 | C8 | H8 | 121.2° | 125.0° |
C8 | N7 | C5 | 101.6° | 109.5° |
N7 | C5 | C6 | 132.6° | 134.7° |
N7 | C5 | C4 | 110.8° | 107.2° |
C6 | C5 | C4 | 116.6° | 118.1° |
C5 | C6 | N6 | 123.2° | 120.7° |
C5 | C6 | N1 | 117.4° | 118.5° |
C5 | C4 | N3 | 127.1° | 119.1° |
N6 | C6 | N1 | 119.4° | 120.8° |
C6 | N6 | HN61 | 120.1° | 120.0° |
C6 | N6 | HN62 | 119.9° | 119.9° |
C6 | N1 | C2 | 120.4° | 121.2° |
HN61 | N6 | HN62 | 120.0° | 120.0° |
N1 | C2 | N3 | 127.2° | 122.5° |
N1 | C2 | H2 | 116.4° | 118.7° |
N3 | C2 | H2 | 116.4° | 118.8° |
C2 | N3 | C4 | 111.3° | 120.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | S2P | OP3 | 125.1° | 120.0° |
OP1 | P | S2P | O5' | 125.1° | 120.0° |
OP1 | P | OP3 | O5' | 113.4° | 120.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 60.0° |
OP1 | P | O5' | C5' | 43.8° | 180.0° |
S2P | P | OP3 | O5' | 113.7° | 120.0° |
S2P | P | OP1 | HOP1 | 180.0° | 60.0° |
S2P | P | OP3 | HOP3 | 47.2° | 180.0° |
S2P | P | O5' | C5' | 176.7° | 60.0° |
OP3 | P | OP1 | HOP1 | 54.9° | 60.0° |
OP3 | P | O5' | C5' | 69.6° | 60.0° |
O5' | P | OP1 | HOP1 | 54.8° | 180.0° |
O5' | P | OP3 | HOP3 | 66.6° | 60.0° |
P | O5' | C5' | C4' | 164.9° | 180.0° |
P | O5' | C5' | H5' | 44.5° | 60.1° |
P | O5' | C5' | H5'' | 74.6° | 59.9° |
O5' | C5' | C4' | H5' | 120.6° | 120.0° |
O5' | C5' | C4' | H5'' | 120.5° | 120.1° |
O5' | C5' | H5' | H5'' | 119.0° | 120.0° |
O5' | C5' | C4' | O4' | 54.2° | 61.5° |
O5' | C5' | C4' | C3' | 62.8° | 177.0° |
O5' | C5' | C4' | H4' | 175.6° | 60.8° |
C4' | C5' | H5' | H5'' | 118.9° | 120.0° |
C5' | C4' | O4' | C3' | 120.8° | 119.0° |
C5' | C4' | O4' | H4' | 121.5° | 122.2° |
C5' | C4' | C3' | H4' | 121.6° | 122.3° |
C5' | C4' | O4' | C1' | 141.8° | 159.5° |
C5' | C4' | C3' | O3' | 85.3° | 98.3° |
C5' | C4' | C3' | C2' | 155.2° | 143.0° |
C5' | C4' | C3' | H3' | 38.6° | 24.3° |
H5' | C5' | C4' | O4' | 66.3° | 178.6° |
H5' | C5' | C4' | C3' | 176.7° | 63.1° |
H5' | C5' | C4' | H4' | 55.0° | 59.2° |
H5'' | C5' | C4' | O4' | 174.8° | 58.6° |
H5'' | C5' | C4' | C3' | 57.8° | 56.9° |
H5'' | C5' | C4' | H4' | 63.9° | 179.2° |
O4' | C4' | C3' | H4' | 117.5° | 118.8° |
O4' | C4' | C3' | O3' | 153.8° | 142.8° |
O4' | C4' | C3' | C2' | 34.3° | 24.1° |
O4' | C4' | C3' | H3' | 82.3° | 94.7° |
C4' | O4' | C1' | C2' | 1.2° | 40.4° |
C4' | O4' | C1' | N9 | 119.6° | 159.4° |
C4' | O4' | C1' | H1' | 119.2° | 78.4° |
C3' | C4' | O4' | C1' | 21.1° | 40.5° |
C4' | C3' | O3' | C2' | 113.6° | 114.7° |
C4' | C3' | O3' | H3' | 123.3° | 122.6° |
C4' | C3' | C2' | H3' | 116.5° | 118.7° |
C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
C4' | C3' | C2' | C1' | 34.3° | 0.1° |
C4' | C3' | C2' | O2' | 85.3° | 118.8° |
C4' | C3' | C2' | H2' | 151.6° | 118.6° |
H4' | C4' | O4' | C1' | 96.7° | 78.3° |
H4' | C4' | C3' | O3' | 36.3° | 23.9° |
H4' | C4' | C3' | C2' | 83.2° | 94.8° |
H4' | C4' | C3' | H3' | 160.2° | 146.5° |
O4' | C1' | C2' | C3' | 22.8° | 23.8° |
O4' | C1' | C2' | N9 | 121.0° | 119.0° |
O4' | C1' | C2' | H1' | 118.1° | 118.9° |
O4' | C1' | C2' | O2' | 96.9° | 142.6° |
O4' | C1' | C2' | H2' | 140.1° | 94.7° |
O4' | C1' | N9 | H1' | 121.2° | 122.2° |
O4' | C1' | N9 | C8 | 21.2° | 27.0° |
O4' | C1' | N9 | C4 | 159.1° | 152.9° |
O3' | C3' | C2' | H3' | 123.6° | 122.6° |
O3' | C3' | C2' | C1' | 154.2° | 118.9° |
O3' | C3' | C2' | O2' | 34.6° | 0.1° |
O3' | C3' | C2' | H2' | 88.5° | 122.7° |
C2' | C3' | O3' | HO3' | 66.4° | 65.3° |
C3' | C2' | C1' | O2' | 119.7° | 118.7° |
C3' | C2' | C1' | H2' | 117.2° | 118.5° |
C3' | C2' | O2' | H2' | 122.6° | 122.6° |
C3' | C2' | C1' | N9 | 98.2° | 142.8° |
C3' | C2' | C1' | H1' | 140.9° | 95.0° |
C3' | C2' | O2' | HO2' | 155.9° | 61.5° |
H3' | C3' | O3' | HO3' | 56.7° | 57.3° |
H3' | C3' | C2' | C1' | 82.2° | 118.5° |
H3' | C3' | C2' | O2' | 158.2° | 122.5° |
H3' | C3' | C2' | H2' | 35.1° | 0.1° |
C1' | C2' | O2' | H2' | 122.6° | 122.8° |
C2' | C1' | N9 | H1' | 120.9° | 122.2° |
C2' | C1' | N9 | C8 | 96.7° | 88.6° |
C2' | C1' | N9 | C4 | 83.0° | 91.5° |
C1' | C2' | O2' | HO2' | 41.0° | 176.2° |
O2' | C2' | C1' | N9 | 142.1° | 98.5° |
O2' | C2' | C1' | H1' | 21.2° | 23.7° |
H2' | C2' | C1' | N9 | 19.0° | 24.3° |
H2' | C2' | C1' | H1' | 101.9° | 146.5° |
H2' | C2' | O2' | HO2' | 81.5° | 61.1° |
C1' | N9 | C8 | C4 | 179.8° | 179.9° |
C1' | N9 | C8 | N7 | 179.9° | 180.0° |
C1' | N9 | C8 | H8 | 0.2° | 0.1° |
C1' | N9 | C4 | C5 | 179.9° | 179.8° |
C1' | N9 | C4 | N3 | 0.1° | 0.1° |
H1' | C1' | N9 | C8 | 142.4° | 149.2° |
H1' | C1' | N9 | C4 | 37.8° | 30.7° |
N9 | C8 | N7 | H8 | 179.7° | 180.0° |
N9 | C8 | N7 | C5 | 0.0° | 0.2° |
C8 | N9 | C4 | C5 | 0.0° | 0.2° |
C8 | N9 | C4 | N3 | 179.9° | 179.9° |
C4 | N9 | C8 | N7 | 0.0° | 0.0° |
C4 | N9 | C8 | H8 | 179.6° | 180.0° |
N9 | C4 | C5 | N7 | 0.0° | 0.3° |
N9 | C4 | C5 | C6 | 179.9° | 179.6° |
N9 | C4 | C5 | N3 | 180.0° | 179.9° |
N9 | C4 | N3 | C2 | 180.0° | 180.0° |
C8 | N7 | C5 | C6 | 179.9° | 179.5° |
C8 | N7 | C5 | C4 | 0.0° | 0.3° |
H8 | C8 | N7 | C5 | 179.6° | 179.8° |
N7 | C5 | C6 | C4 | 179.9° | 179.1° |
N7 | C5 | C6 | N6 | 0.2° | 0.7° |
N7 | C5 | C6 | N1 | 179.9° | 179.6° |
N7 | C5 | C4 | N3 | 179.9° | 179.7° |
C5 | C6 | N6 | N1 | 179.9° | 179.7° |
C5 | C6 | N6 | HN61 | 179.9° | 179.7° |
C5 | C6 | N6 | HN62 | 0.1° | 0.5° |
C5 | C6 | N1 | C2 | 0.1° | 0.3° |
C6 | C5 | C4 | N3 | 0.1° | 0.4° |
C4 | C5 | C6 | N6 | 179.8° | 179.8° |
C4 | C5 | C6 | N1 | 0.1° | 0.5° |
C5 | C4 | N3 | C2 | 0.1° | 0.1° |
C6 | N6 | HN61 | HN62 | 180.0° | 179.8° |
N6 | C6 | N1 | C2 | 179.8° | 180.0° |
N1 | C6 | N6 | HN61 | 0.2° | 0.0° |
N1 | C6 | N6 | HN62 | 179.8° | 179.8° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
C6 | N1 | C2 | H2 | 179.9° | 179.9° |
N1 | C2 | N3 | H2 | 179.8° | 179.9° |
N1 | C2 | N3 | C4 | 0.0° | 0.1° |
H2 | C2 | N3 | C4 | 179.8° | 180.0° |