Obsolete: SPG

SPG was replaced with PGS on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1P	doub	1.48Å	1.48Å
P	O2P	sing	1.61Å	1.46Å
P	O3P	sing	1.61Å	1.50Å
P	S6	sing	2.12Å	1.82Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å
S6	C6	sing	1.76Å	1.79Å
O1A	PA	doub	1.48Å	1.49Å
PA	O2A	sing	1.61Å	1.46Å
PA	O3A	sing	1.61Å	1.48Å
PA	O5'	sing	1.61Å	1.60Å
O2A	HOA2	sing	0.97Å	0.95Å
O3A	HOA3	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.48Å
C5'	C4'	sing	1.53Å	1.47Å
C5'	H5'1	sing	1.09Å	1.09Å
C5'	H5'2	sing	1.09Å	1.09Å
C4'	O4'	sing	1.44Å	1.40Å
C4'	C3'	sing	1.54Å	1.52Å
C4'	H4'	sing	1.09Å	1.09Å
O4'	C1'	sing	1.44Å	1.44Å
C3'	O3'	sing	1.43Å	1.45Å
C3'	C2'	sing	1.55Å	1.53Å
C3'	H3'	sing	1.09Å	1.09Å
O3'	HO3'	sing	0.97Å	0.97Å
C2'	O2'	sing	1.43Å	1.44Å
C2'	C1'	sing	1.55Å	1.51Å
C2'	H2'	sing	1.09Å	1.09Å
O2'	HO2'	sing	0.97Å	0.96Å
C1'	N9	sing	1.46Å	1.38Å
C1'	H1'	sing	1.09Å	1.09Å
N9	C8	sing	1.36Å	1.39Å	Aromatic
N9	C4	sing	1.37Å	1.36Å	Aromatic
C8	N7	doub	1.30Å	1.28Å	Aromatic
C8	H8	sing	1.08Å	1.09Å
N7	C5	sing	1.35Å	1.37Å	Aromatic
C5	C6	sing	1.41Å	1.36Å	Aromatic
C5	C4	doub	1.41Å	1.35Å	Aromatic
C6	N1	doub	1.33Å	1.37Å	Aromatic
N1	C2	sing	1.32Å	1.37Å	Aromatic
N1	HN1	sing	0.97Å	1.01Å
C2	N3	doub	1.32Å	1.34Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N3	C4	sing	1.33Å	1.30Å	Aromatic

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O2P	110.3°	109.5°
O1P	P	O3P	111.7°	109.4°
O1P	P	S6	96.2°	109.5°
O2P	P	O3P	109.3°	109.5°
O2P	P	S6	121.8°	109.5°
P	O2P	HOP2	110.3°	106.8°
O3P	P	S6	106.9°	109.5°
P	O3P	HOP3	111.8°	106.8°
P	S6	C6	111.2°	100.0°
S6	C6	C5	127.7°	120.8°
S6	C6	N1	120.2°	120.8°
O1A	PA	O2A	109.5°	109.5°
O1A	PA	O3A	110.8°	109.5°
O1A	PA	O5'	107.9°	109.5°
O2A	PA	O3A	110.9°	109.4°
O2A	PA	O5'	109.2°	109.5°
PA	O2A	HOA2	109.4°	106.8°
O3A	PA	O5'	108.4°	109.5°
PA	O3A	HOA3	110.9°	106.8°
PA	O5'	C5'	120.3°	106.8°
O5'	C5'	C4'	115.4°	109.5°
O5'	C5'	H5'1	112.0°	109.5°
O5'	C5'	H5'2	105.7°	109.4°
C4'	C5'	H5'1	109.1°	109.5°
C4'	C5'	H5'2	106.8°	109.5°
C5'	C4'	O4'	103.9°	110.0°
C5'	C4'	C3'	122.3°	109.9°
C5'	C4'	H4'	107.3°	109.9°
H5'1	C5'	H5'2	107.3°	109.5°
O4'	C4'	C3'	105.9°	107.3°
O4'	C4'	H4'	108.9°	109.8°
C4'	O4'	C1'	108.4°	107.0°
C3'	C4'	H4'	107.9°	109.9°
C4'	C3'	O3'	105.8°	110.5°
C4'	C3'	C2'	102.9°	104.3°
C4'	C3'	H3'	116.5°	110.5°
O4'	C1'	C2'	107.0°	103.5°
O4'	C1'	N9	118.7°	110.6°
O4'	C1'	H1'	109.2°	110.6°
O3'	C3'	C2'	103.9°	110.5°
O3'	C3'	H3'	110.1°	110.4°
C3'	O3'	HO3'	107.7°	106.8°
C2'	C3'	H3'	116.4°	110.5°
C3'	C2'	O2'	121.9°	111.0°
C3'	C2'	C1'	96.7°	102.0°
C3'	C2'	H2'	110.6°	111.0°
O2'	C2'	C1'	95.6°	110.9°
O2'	C2'	H2'	115.5°	110.8°
C2'	O2'	HO2'	109.8°	106.8°
C1'	C2'	H2'	113.5°	110.9°
C2'	C1'	N9	99.9°	110.7°
C2'	C1'	H1'	110.0°	110.6°
N9	C1'	H1'	111.4°	110.6°
C1'	N9	C8	127.1°	126.3°
C1'	N9	C4	125.2°	126.2°
C8	N9	C4	103.9°	107.5°
N9	C8	N7	114.1°	110.0°
N9	C8	H8	123.3°	125.0°
N9	C4	C5	107.0°	106.0°
N9	C4	N3	125.4°	135.0°
N7	C8	H8	122.4°	125.0°
C8	N7	C5	104.1°	109.4°
N7	C5	C6	126.6°	134.7°
N7	C5	C4	111.0°	107.2°
C6	C5	C4	122.5°	118.2°
C5	C6	N1	112.1°	118.4°
C5	C4	N3	127.5°	119.1°
C6	N1	C2	121.3°	121.2°
C6	N1	HN1	120.3°	119.4°
C2	N1	HN1	118.3°	119.4°
N1	C2	N3	126.2°	122.5°
N1	C2	H2	118.0°	118.8°
N3	C2	H2	115.7°	118.7°
C2	N3	C4	110.2°	120.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O3P	123.2°	120.0°
O1P	P	O2P	S6	111.4°	120.0°
O1P	P	O3P	S6	104.1°	120.0°
O1P	P	O2P	HOP2	179.9°	180.0°
O1P	P	O3P	HOP3	180.0°	60.1°
O1P	P	S6	C6	153.1°	60.0°
O2P	P	O3P	S6	133.6°	120.0°
O2P	P	O3P	HOP3	57.7°	59.9°
O2P	P	S6	C6	34.6°	60.0°
O3P	P	O2P	HOP2	56.8°	60.0°
O3P	P	S6	C6	92.0°	180.0°
S6	P	O2P	HOP2	68.7°	60.0°
S6	P	O3P	HOP3	76.0°	180.0°
P	S6	C6	C5	171.9°	90.0°
P	S6	C6	N1	6.2°	90.0°
S6	C6	C5	N7	1.0°	0.0°
S6	C6	C5	N1	178.2°	180.0°
S6	C6	C5	C4	179.8°	179.7°
S6	C6	N1	C2	176.9°	180.0°
S6	C6	N1	HN1	0.9°	0.0°
O1A	PA	O2A	O3A	122.6°	120.0°
O1A	PA	O2A	O5'	118.0°	120.0°
O1A	PA	O3A	O5'	118.3°	120.0°
O1A	PA	O2A	HOA2	180.0°	60.0°
O1A	PA	O3A	HOA3	180.0°	180.0°
O1A	PA	O5'	C5'	170.4°	55.1°
O2A	PA	O3A	O5'	119.9°	120.0°
O2A	PA	O3A	HOA3	58.2°	60.0°
O2A	PA	O5'	C5'	51.4°	175.0°
O3A	PA	O2A	HOA2	57.4°	60.0°
O3A	PA	O5'	C5'	69.5°	65.0°
O5'	PA	O2A	HOA2	62.0°	180.0°
O5'	PA	O3A	HOA3	61.7°	60.0°
PA	O5'	C5'	C4'	148.0°	180.0°
PA	O5'	C5'	H5'1	22.4°	60.0°
PA	O5'	C5'	H5'2	94.2°	60.0°
O5'	C5'	C4'	H5'1	127.1°	120.0°
O5'	C5'	C4'	H5'2	117.1°	119.9°
O5'	C5'	H5'1	H5'2	115.6°	119.9°
O5'	C5'	C4'	O4'	72.9°	67.0°
O5'	C5'	C4'	C3'	46.6°	175.0°
O5'	C5'	C4'	H4'	171.9°	54.0°
C4'	C5'	H5'1	H5'2	115.4°	120.0°
C5'	C4'	O4'	C3'	130.0°	119.5°
C5'	C4'	O4'	H4'	114.1°	121.0°
C5'	C4'	C3'	H4'	125.0°	121.0°
C5'	C4'	O4'	C1'	123.6°	146.0°
C5'	C4'	C3'	O3'	164.3°	119.7°
C5'	C4'	C3'	C2'	87.0°	121.6°
C5'	C4'	C3'	H3'	41.6°	2.8°
H5'1	C5'	C4'	O4'	54.3°	173.0°
H5'1	C5'	C4'	C3'	173.7°	55.0°
H5'1	C5'	C4'	H4'	61.0°	66.0°
H5'2	C5'	C4'	O4'	170.0°	52.9°
H5'2	C5'	C4'	C3'	70.6°	65.0°
H5'2	C5'	C4'	H4'	54.7°	174.0°
O4'	C4'	C3'	H4'	116.6°	119.4°
O4'	C4'	C3'	O3'	77.3°	120.7°
O4'	C4'	C3'	C2'	31.4°	1.9°
O4'	C4'	C3'	H3'	160.0°	116.8°
C4'	O4'	C1'	C2'	21.7°	40.0°
C4'	O4'	C1'	N9	133.5°	158.7°
C4'	O4'	C1'	H1'	97.3°	78.4°
C3'	C4'	O4'	C1'	6.4°	26.5°
C4'	C3'	O3'	C2'	108.0°	114.9°
C4'	C3'	O3'	H3'	126.7°	122.5°
C4'	C3'	C2'	H3'	128.7°	118.7°
C4'	C3'	O3'	HO3'	23.9°	178.1°
C4'	C3'	C2'	O2'	142.1°	139.1°
C4'	C3'	C2'	C1'	41.3°	20.9°
C4'	C3'	C2'	H2'	77.0°	97.3°
H4'	C4'	O4'	C1'	122.3°	92.9°
H4'	C4'	C3'	O3'	39.3°	1.3°
H4'	C4'	C3'	C2'	148.0°	117.5°
H4'	C4'	C3'	H3'	83.4°	123.8°
O4'	C1'	C2'	C3'	38.9°	37.0°
O4'	C1'	C2'	O2'	162.0°	155.3°
O4'	C1'	C2'	N9	124.2°	118.6°
O4'	C1'	C2'	H1'	118.5°	118.5°
O4'	C1'	C2'	H2'	77.0°	81.2°
O4'	C1'	N9	H1'	128.1°	122.9°
O4'	C1'	N9	C8	20.7°	23.5°
O4'	C1'	N9	C4	133.5°	156.7°
O3'	C3'	C2'	H3'	121.1°	122.5°
O3'	C3'	C2'	O2'	31.9°	20.4°
O3'	C3'	C2'	C1'	68.9°	97.8°
O3'	C3'	C2'	H2'	172.8°	144.0°
C2'	C3'	O3'	HO3'	131.9°	63.2°
C3'	C2'	O2'	C1'	101.4°	112.6°
C3'	C2'	O2'	H2'	139.2°	123.8°
C3'	C2'	C1'	H2'	115.9°	118.2°
C3'	C2'	O2'	HO2'	123.0°	67.4°
C3'	C2'	C1'	N9	163.1°	155.6°
C3'	C2'	C1'	H1'	79.6°	81.5°
H3'	C3'	O3'	HO3'	102.8°	59.4°
H3'	C3'	C2'	O2'	89.2°	102.2°
H3'	C3'	C2'	C1'	169.9°	139.6°
H3'	C3'	C2'	H2'	51.7°	21.5°
O2'	C2'	C1'	H2'	121.0°	123.5°
O2'	C2'	C1'	N9	73.8°	86.2°
O2'	C2'	C1'	H1'	43.5°	36.8°
C1'	C2'	O2'	HO2'	21.6°	180.0°
C2'	C1'	N9	H1'	116.2°	122.9°
C2'	C1'	N9	C8	95.0°	90.6°
C2'	C1'	N9	C4	110.7°	89.1°
H2'	C2'	O2'	HO2'	97.8°	56.4°
H2'	C2'	C1'	N9	47.2°	37.4°
H2'	C2'	C1'	H1'	164.5°	160.3°
C1'	N9	C8	C4	158.5°	179.8°
C1'	N9	C8	N7	157.8°	180.0°
C1'	N9	C8	H8	17.6°	0.0°
C1'	N9	C4	C5	158.6°	179.9°
C1'	N9	C4	N3	22.9°	0.7°
H1'	C1'	N9	C8	148.8°	146.5°
H1'	C1'	N9	C4	5.4°	33.8°
N9	C8	N7	H8	175.4°	180.0°
N9	C8	N7	C5	0.6°	0.0°
C8	N9	C4	C5	0.5°	0.3°
C8	N9	C4	N3	178.0°	179.5°
C4	N9	C8	N7	0.7°	0.2°
C4	N9	C8	H8	176.1°	179.8°
N9	C4	C5	N7	0.2°	0.4°
N9	C4	C5	C6	178.8°	179.9°
N9	C4	C5	N3	178.4°	179.3°
N9	C4	N3	C2	178.4°	179.6°
C8	N7	C5	C6	179.2°	180.0°
C8	N7	C5	C4	0.3°	0.2°
H8	C8	N7	C5	176.1°	179.9°
N7	C5	C6	C4	178.8°	179.7°
N7	C5	C6	N1	177.2°	180.0°
N7	C5	C4	N3	178.3°	179.7°
C5	C6	N1	C2	4.7°	0.1°
C5	C6	N1	HN1	177.5°	180.0°
C6	C5	C4	N3	2.8°	0.5°
C4	C5	C6	N1	1.6°	0.3°
C5	C4	N3	C2	3.4°	0.6°
C6	N1	C2	HN1	177.9°	179.9°
C6	N1	C2	N3	4.3°	0.1°
C6	N1	C2	H2	175.7°	180.0°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.1°	0.3°
HN1	N1	C2	N3	177.8°	180.0°
HN1	N1	C2	H2	2.2°	0.0°
H2	C2	N3	C4	179.9°	179.7°

Definition date:	1999-07-08
Last modified:	2008-10-14
Release status:	OBS
Processing site:	RCSB
Replaced by:	PGS
Derived from:	1NHT