SOG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.55Å
C1	S1	sing	1.81Å	1.44Å
C1	O5	sing	1.42Å	1.46Å
C1	H1	sing	1.09Å	1.11Å
C2	C3	sing	1.53Å	1.54Å
C2	O2	sing	1.43Å	1.42Å
C2	H2	sing	1.09Å	1.11Å
C3	C4	sing	1.53Å	1.53Å
C3	O3	sing	1.43Å	1.41Å
C3	H3	sing	1.09Å	1.11Å
C4	C5	sing	1.53Å	1.55Å
C4	O4	sing	1.43Å	1.42Å
C4	H4	sing	1.09Å	1.11Å
C5	C6	sing	1.53Å	1.52Å
C5	O5	sing	1.42Å	1.46Å
C5	H5	sing	1.09Å	1.12Å
C6	O6	sing	1.43Å	1.41Å
C6	H61	sing	1.09Å	1.11Å
C6	H62	sing	1.09Å	1.12Å
C1'	C2'	sing	1.53Å	1.52Å
C1'	S1	sing	1.81Å	1.43Å
C1'	H1'1	sing	1.09Å	1.11Å
C1'	H1'2	sing	1.09Å	1.12Å
C2'	C3'	sing	1.53Å	1.52Å
C2'	H2'1	sing	1.09Å	1.11Å
C2'	H2'2	sing	1.09Å	1.11Å
C3'	C4'	sing	1.53Å	1.52Å
C3'	H3'1	sing	1.09Å	1.12Å
C3'	H3'2	sing	1.09Å	1.12Å
C4'	C5'	sing	1.53Å	1.52Å
C4'	H4'1	sing	1.09Å	1.11Å
C4'	H4'2	sing	1.09Å	1.11Å
C5'	C6'	sing	1.53Å	1.51Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.11Å
C6'	C7'	sing	1.53Å	1.51Å
C6'	H6'1	sing	1.09Å	1.11Å
C6'	H6'2	sing	1.09Å	1.11Å
C7'	C8'	sing	1.53Å	1.51Å
C7'	H7'1	sing	1.09Å	1.12Å
C7'	H7'2	sing	1.09Å	1.11Å
C8'	H8'1	sing	1.09Å	1.12Å
C8'	H8'2	sing	1.09Å	1.11Å
C8'	H8'3	sing	1.09Å	1.11Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O6	HO6	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	S1	110.3°	109.4°
C2	C1	O5	109.2°	109.8°
C2	C1	H1	109.3°	109.4°
C1	C2	C3	109.5°	109.0°
C1	C2	O2	110.1°	109.6°
C1	C2	H2	109.2°	109.6°
S1	C1	O5	110.3°	109.4°
S1	C1	H1	108.2°	109.4°
C1	S1	C1'	113.6°	100.0°
O5	C1	H1	109.4°	109.4°
C1	O5	C5	114.2°	107.6°
C3	C2	O2	109.9°	109.6°
C3	C2	H2	109.4°	109.5°
C2	C3	C4	108.0°	108.7°
C2	C3	O3	109.9°	109.8°
C2	C3	H3	110.2°	109.6°
O2	C2	H2	108.8°	109.5°
C2	O2	HO2	110.1°	106.8°
C4	C3	O3	109.9°	109.6°
C4	C3	H3	110.4°	109.6°
C3	C4	C5	109.1°	109.0°
C3	C4	O4	109.8°	109.7°
C3	C4	H4	109.6°	109.6°
O3	C3	H3	108.4°	109.5°
C3	O3	HO3	110.0°	106.8°
C5	C4	O4	109.9°	109.6°
C5	C4	H4	109.6°	109.5°
C4	C5	C6	110.8°	109.4°
C4	C5	O5	109.1°	109.8°
C4	C5	H5	108.7°	109.4°
O4	C4	H4	108.8°	109.5°
C4	O4	HO4	109.8°	106.8°
C6	C5	O5	109.2°	109.5°
C6	C5	H5	108.7°	109.3°
C5	C6	O6	110.0°	109.5°
C5	C6	H61	112.0°	109.6°
C5	C6	H62	112.0°	109.4°
O5	C5	H5	110.3°	109.4°
O6	C6	H61	112.1°	109.5°
O6	C6	H62	112.0°	109.4°
C6	O6	HO6	110.0°	106.8°
H61	C6	H62	98.4°	109.4°
C2'	C1'	S1	107.7°	109.5°
C2'	C1'	H1'1	112.9°	109.5°
C2'	C1'	H1'2	112.8°	109.5°
C1'	C2'	C3'	111.2°	109.6°
C1'	C2'	H2'1	111.6°	109.5°
C1'	C2'	H2'2	111.6°	109.5°
S1	C1'	H1'1	112.9°	109.4°
S1	C1'	H1'2	112.9°	109.5°
H1'1	C1'	H1'2	97.6°	109.5°
C3'	C2'	H2'1	111.6°	109.4°
C3'	C2'	H2'2	111.5°	109.4°
C2'	C3'	C4'	111.5°	109.6°
C2'	C3'	H3'1	111.5°	109.5°
C2'	C3'	H3'2	111.5°	109.4°
H2'1	C2'	H2'2	98.9°	109.4°
C4'	C3'	H3'1	111.4°	109.5°
C4'	C3'	H3'2	111.5°	109.4°
C3'	C4'	C5'	111.2°	109.6°
C3'	C4'	H4'1	111.6°	109.5°
C3'	C4'	H4'2	111.6°	109.4°
H3'1	C3'	H3'2	98.8°	109.4°
C5'	C4'	H4'1	111.5°	109.5°
C5'	C4'	H4'2	111.6°	109.4°
C4'	C5'	C6'	111.0°	109.6°
C4'	C5'	H5'1	111.7°	109.5°
C4'	C5'	H5'2	111.7°	109.4°
H4'1	C4'	H4'2	98.9°	109.4°
C6'	C5'	H5'1	111.6°	109.5°
C6'	C5'	H5'2	111.7°	109.4°
C5'	C6'	C7'	111.6°	109.6°
C5'	C6'	H6'1	111.4°	109.5°
C5'	C6'	H6'2	111.4°	109.4°
H5'1	C5'	H5'2	98.7°	109.4°
C7'	C6'	H6'1	111.4°	109.5°
C7'	C6'	H6'2	111.4°	109.5°
C6'	C7'	C8'	110.4°	109.5°
C6'	C7'	H7'1	111.9°	109.5°
C6'	C7'	H7'2	111.9°	109.5°
H6'1	C6'	H6'2	99.0°	109.4°
C8'	C7'	H7'1	111.9°	109.5°
C8'	C7'	H7'2	111.9°	109.5°
C7'	C8'	H8'1	110.3°	109.5°
C7'	C8'	H8'2	111.9°	109.5°
C7'	C8'	H8'3	111.9°	109.5°
H7'1	C7'	H7'2	98.5°	109.4°
H8'1	C8'	H8'2	111.9°	109.5°
H8'1	C8'	H8'3	111.8°	109.5°
H8'2	C8'	H8'3	98.6°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	S1	O5	120.8°	120.3°
C2	C1	S1	H1	119.6°	119.8°
C2	C1	O5	H1	119.7°	120.1°
C1	C2	C3	O2	121.0°	119.9°
C1	C2	C3	H2	119.6°	119.9°
C1	C2	O2	H2	119.6°	120.3°
C1	C2	C3	C4	59.6°	53.8°
C1	C2	C3	O3	179.5°	173.6°
C1	C2	C3	H3	61.0°	66.0°
C2	C1	O5	C5	58.7°	67.6°
C2	C1	S1	C1'	145.8°	179.8°
C1	C2	O2	HO2	180.0°	60.4°
S1	C1	O5	H1	118.9°	119.8°
S1	C1	C2	C3	179.1°	178.6°
S1	C1	C2	O2	60.0°	58.7°
S1	C1	C2	H2	59.3°	61.6°
S1	C1	O5	C5	179.9°	172.3°
C1	S1	C1'	C2'	121.5°	180.0°
C1	S1	C1'	H1'1	3.8°	60.0°
C1	S1	C1'	H1'2	113.3°	60.0°
O5	C1	C2	C3	57.7°	61.3°
O5	C1	C2	O2	178.6°	178.8°
O5	C1	C2	H2	62.0°	58.5°
C1	O5	C5	C4	59.3°	67.6°
C1	O5	C5	C6	179.5°	172.3°
C1	O5	C5	H5	60.1°	52.5°
O5	C1	S1	C1'	93.4°	59.9°
H1	C1	C2	C3	62.0°	58.8°
H1	C1	C2	O2	58.9°	61.1°
H1	C1	C2	H2	178.2°	178.6°
H1	C1	O5	C5	61.0°	52.5°
H1	C1	S1	C1'	26.3°	60.0°
C3	C2	O2	H2	119.8°	120.1°
C2	C3	C4	O3	119.9°	120.0°
C2	C3	C4	H3	120.6°	119.8°
C2	C3	O3	H3	120.5°	120.4°
C2	C3	C4	C5	60.1°	53.7°
C2	C3	C4	O4	179.4°	173.7°
C2	C3	C4	H4	59.9°	66.1°
C3	C2	O2	HO2	59.4°	180.0°
C2	C3	O3	HO3	180.0°	60.7°
O2	C2	C3	C4	179.3°	173.7°
O2	C2	C3	O3	59.5°	66.4°
O2	C2	C3	H3	60.0°	53.9°
H2	C2	C3	C4	60.0°	66.1°
H2	C2	C3	O3	59.9°	53.7°
H2	C2	C3	H3	179.4°	174.1°
H2	C2	O2	HO2	60.4°	59.8°
C4	C3	O3	H3	120.7°	120.3°
C3	C4	C5	O4	120.5°	120.0°
C3	C4	C5	H4	120.0°	119.8°
C3	C4	O4	H4	120.0°	120.2°
C3	C4	C5	C6	179.0°	178.6°
C3	C4	C5	O5	58.8°	61.2°
C3	C4	C5	H5	61.6°	58.9°
C4	C3	O3	HO3	61.3°	180.0°
C3	C4	O4	HO4	180.0°	60.5°
O3	C3	C4	C5	180.0°	173.7°
O3	C3	C4	O4	59.5°	66.4°
O3	C3	C4	H4	60.0°	53.8°
H3	C3	C4	C5	60.5°	66.1°
H3	C3	C4	O4	60.0°	53.8°
H3	C3	C4	H4	179.6°	174.1°
H3	C3	O3	HO3	59.4°	59.7°
C5	C4	O4	H4	120.0°	120.2°
C4	C5	C6	O5	120.2°	120.4°
C4	C5	C6	H5	119.4°	119.7°
C4	C5	O5	H5	119.4°	120.1°
C4	C5	C6	O6	84.7°	179.7°
C4	C5	C6	H61	40.6°	59.6°
C4	C5	C6	H62	150.0°	60.4°
C5	C4	O4	HO4	60.0°	179.9°
O4	C4	C5	C6	60.5°	58.6°
O4	C4	C5	O5	179.3°	178.8°
O4	C4	C5	H5	58.9°	61.1°
H4	C4	C5	C6	59.0°	61.5°
H4	C4	C5	O5	61.2°	58.6°
H4	C4	C5	H5	178.4°	178.8°
H4	C4	O4	HO4	60.0°	59.8°
C6	C5	O5	H5	119.4°	119.8°
C5	C6	O6	H61	125.2°	120.1°
C5	C6	O6	H62	125.3°	119.9°
C5	C6	H61	H62	117.9°	120.0°
C5	C6	O6	HO6	180.0°	180.0°
O5	C5	C6	O6	155.1°	59.9°
O5	C5	C6	H61	79.6°	180.0°
O5	C5	C6	H62	29.8°	60.0°
H5	C5	C6	O6	34.7°	60.0°
H5	C5	C6	H61	160.0°	60.2°
H5	C5	C6	H62	90.5°	179.9°
O6	C6	H61	H62	118.0°	119.9°
H61	C6	O6	HO6	54.8°	59.9°
H62	C6	O6	HO6	54.7°	60.0°
C2'	C1'	S1	H1'1	125.3°	120.0°
C2'	C1'	S1	H1'2	125.2°	120.0°
C2'	C1'	H1'1	H1'2	118.7°	120.0°
C1'	C2'	C3'	H2'1	125.2°	120.0°
C1'	C2'	C3'	H2'2	125.3°	120.0°
C1'	C2'	H2'1	H2'2	117.5°	120.0°
C1'	C2'	C3'	C4'	179.8°	180.0°
C1'	C2'	C3'	H3'1	54.6°	59.9°
C1'	C2'	C3'	H3'2	54.9°	60.0°
S1	C1'	H1'1	H1'2	118.8°	120.0°
S1	C1'	C2'	C3'	149.0°	180.0°
S1	C1'	C2'	H2'1	85.8°	60.0°
S1	C1'	C2'	H2'2	23.8°	60.0°
H1'1	C1'	C2'	C3'	85.7°	60.0°
H1'1	C1'	C2'	H2'1	39.5°	180.0°
H1'1	C1'	C2'	H2'2	149.1°	60.0°
H1'2	C1'	C2'	C3'	23.7°	60.0°
H1'2	C1'	C2'	H2'1	149.0°	60.0°
H1'2	C1'	C2'	H2'2	101.5°	180.0°
C3'	C2'	H2'1	H2'2	117.4°	119.9°
C2'	C3'	C4'	H3'1	125.3°	120.1°
C2'	C3'	C4'	H3'2	125.3°	120.0°
C2'	C3'	H3'1	H3'2	117.4°	119.9°
C2'	C3'	C4'	C5'	179.9°	180.0°
C2'	C3'	C4'	H4'1	54.9°	59.9°
C2'	C3'	C4'	H4'2	54.7°	60.0°
H2'1	C2'	C3'	C4'	54.9°	59.9°
H2'1	C2'	C3'	H3'1	179.8°	180.0°
H2'1	C2'	C3'	H3'2	70.4°	60.1°
H2'2	C2'	C3'	C4'	54.6°	60.0°
H2'2	C2'	C3'	H3'1	70.7°	60.1°
H2'2	C2'	C3'	H3'2	179.9°	180.0°
C4'	C3'	H3'1	H3'2	117.3°	119.9°
C3'	C4'	C5'	H4'1	125.3°	120.1°
C3'	C4'	C5'	H4'2	125.2°	120.0°
C3'	C4'	H4'1	H4'2	117.5°	119.9°
C3'	C4'	C5'	C6'	174.3°	180.0°
C3'	C4'	C5'	H5'1	60.4°	59.9°
C3'	C4'	C5'	H5'2	49.0°	60.0°
H3'1	C3'	C4'	C5'	54.6°	59.9°
H3'1	C3'	C4'	H4'1	179.9°	180.0°
H3'1	C3'	C4'	H4'2	70.6°	60.1°
H3'2	C3'	C4'	C5'	54.7°	60.0°
H3'2	C3'	C4'	H4'1	70.5°	60.1°
H3'2	C3'	C4'	H4'2	180.0°	180.0°
C5'	C4'	H4'1	H4'2	117.5°	119.9°
C4'	C5'	C6'	H5'1	125.3°	120.1°
C4'	C5'	C6'	H5'2	125.3°	120.0°
C4'	C5'	H5'1	H5'2	117.6°	119.9°
C4'	C5'	C6'	C7'	179.9°	180.0°
C4'	C5'	C6'	H6'1	54.7°	59.9°
C4'	C5'	C6'	H6'2	54.9°	60.0°
H4'1	C4'	C5'	C6'	49.1°	59.9°
H4'1	C4'	C5'	H5'1	174.3°	NaN°
H4'1	C4'	C5'	H5'2	76.2°	60.1°
H4'2	C4'	C5'	C6'	60.4°	60.0°
H4'2	C4'	C5'	H5'1	64.8°	60.1°
H4'2	C4'	C5'	H5'2	174.3°	180.0°
C6'	C5'	H5'1	H5'2	117.5°	119.9°
C5'	C6'	C7'	H6'1	125.3°	120.1°
C5'	C6'	C7'	H6'2	125.2°	120.0°
C5'	C6'	H6'1	H6'2	117.4°	119.9°
C5'	C6'	C7'	C8'	179.9°	180.0°
C5'	C6'	C7'	H7'1	54.8°	59.9°
C5'	C6'	C7'	H7'2	54.6°	60.0°
H5'1	C5'	C6'	C7'	54.8°	59.9°
H5'1	C5'	C6'	H6'1	180.0°	180.0°
H5'1	C5'	C6'	H6'2	70.4°	60.1°
H5'2	C5'	C6'	C7'	54.6°	60.0°
H5'2	C5'	C6'	H6'1	70.6°	60.1°
H5'2	C5'	C6'	H6'2	179.8°	180.0°
C7'	C6'	H6'1	H6'2	117.3°	119.9°
C6'	C7'	C8'	H7'1	125.3°	120.1°
C6'	C7'	C8'	H7'2	125.3°	120.0°
C6'	C7'	H7'1	H7'2	117.8°	120.0°
C6'	C7'	C8'	H8'1	180.0°	180.0°
C6'	C7'	C8'	H8'2	54.8°	60.0°
C6'	C7'	C8'	H8'3	54.8°	60.0°
H6'1	C6'	C7'	C8'	54.7°	59.9°
H6'1	C6'	C7'	H7'1	179.9°	180.0°
H6'1	C6'	C7'	H7'2	70.6°	60.1°
H6'2	C6'	C7'	C8'	54.8°	60.0°
H6'2	C6'	C7'	H7'1	70.4°	60.1°
H6'2	C6'	C7'	H7'2	179.9°	180.0°
C8'	C7'	H7'1	H7'2	117.8°	119.9°
C7'	C8'	H8'1	H8'2	125.2°	120.0°
C7'	C8'	H8'1	H8'3	125.2°	120.0°
C7'	C8'	H8'2	H8'3	117.8°	120.0°
H7'1	C7'	C8'	H8'1	54.7°	59.9°
H7'1	C7'	C8'	H8'2	180.0°	60.1°
H7'1	C7'	C8'	H8'3	70.5°	179.9°
H7'2	C7'	C8'	H8'1	54.7°	60.0°
H7'2	C7'	C8'	H8'2	70.5°	180.0°
H7'2	C7'	C8'	H8'3	179.9°	60.0°
H8'1	C8'	H8'2	H8'3	117.8°	120.0°

Definition date:	2003-01-21
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	1J2Z