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Summary Geometry Related PDB entries

Obsolete: SOC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	0.00Å	1.44Å
N	H	sing	0.00Å	1.02Å
N	H2	sing	0.00Å	1.02Å
CA	CB	sing	0.00Å	1.56Å
CA	C	sing	0.00Å	1.52Å
CA	HA	sing	0.00Å	1.12Å
CB	SE	sing	0.00Å	1.85Å
CB	HB2	sing	0.00Å	1.11Å
CB	HB3	sing	0.00Å	1.11Å
SE	OD1	doub	0.00Å	1.72Å
SE	OD2	doub	0.00Å	1.71Å
C	O	doub	0.00Å	1.23Å
C	OXT	sing	0.00Å	1.34Å
OXT	HXT	sing	0.00Å	0.95Å
HE	SE	sing	0.00Å	1.50Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	111.4°	90.0°
CA	N	H2	111.5°	90.0°
N	CA	CB	111.4°	90.0°
N	CA	C	109.8°	90.0°
N	CA	HA	107.7°	90.0°
H	N	H2	111.5°	90.0°
CB	CA	C	108.7°	90.0°
CB	CA	HA	108.9°	90.0°
CA	CB	SE	123.6°	90.0°
CA	CB	HB2	107.2°	90.0°
CA	CB	HB3	107.2°	90.0°
C	CA	HA	110.4°	90.0°
CA	C	O	117.9°	90.0°
CA	C	OXT	120.0°	90.0°
SE	CB	HB2	107.2°	90.0°
SE	CB	HB3	107.2°	90.0°
CB	SE	OD1	99.5°	90.0°
CB	SE	OD2	114.5°	90.0°
CB	SE	HE	109.9°	90.0°
HB2	CB	HB3	102.6°	90.0°
OD1	SE	OD2	99.3°	90.0°
OD1	SE	HE	123.1°	90.0°
OD2	SE	HE	110.1°	90.0°
O	C	OXT	122.1°	90.0°
C	OXT	HXT	120.1°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	H2	125.3°	90.0°
N	CA	CB	C	121.1°	90.0°
N	CA	CB	HA	118.6°	90.0°
N	CA	C	HA	118.6°	90.0°
N	CA	CB	SE	24.5°	90.0°
N	CA	CB	HB2	100.8°	90.0°
N	CA	CB	HB3	149.8°	90.0°
N	CA	C	O	156.9°	90.0°
N	CA	C	OXT	24.8°	90.0°
H	N	CA	CB	180.0°	90.0°
H	N	CA	C	59.5°	90.0°
H	N	CA	HA	60.7°	90.0°
H2	N	CA	CB	54.7°	90.0°
H2	N	CA	C	175.2°	90.0°
H2	N	CA	HA	64.6°	90.0°
CB	CA	C	HA	119.3°	90.0°
CA	CB	SE	HB2	125.2°	90.0°
CA	CB	SE	HB3	125.2°	90.0°
CA	CB	HB2	HB3	112.7°	90.0°
CA	CB	SE	OD1	130.0°	90.0°
CA	CB	SE	OD2	25.2°	90.0°
CB	CA	C	O	81.0°	90.0°
CB	CA	C	OXT	97.3°	90.0°
CA	CB	SE	HE	99.4°	90.0°
C	CA	CB	SE	145.6°	90.0°
C	CA	CB	HB2	20.4°	90.0°
C	CA	CB	HB3	89.1°	90.0°
CA	C	O	OXT	178.3°	90.0°
CA	C	OXT	HXT	180.0°	90.0°
HA	CA	CB	SE	94.1°	90.0°
HA	CA	CB	HB2	140.7°	90.0°
HA	CA	CB	HB3	31.2°	90.0°
HA	CA	C	O	38.3°	90.0°
HA	CA	C	OXT	143.4°	90.0°
SE	CB	HB2	HB3	112.7°	90.0°
CB	SE	OD1	OD2	117.0°	90.0°
CB	SE	OD1	HE	121.5°	90.0°
CB	SE	OD2	HE	124.5°	90.0°
HB2	CB	SE	OD1	4.8°	90.0°
HB2	CB	SE	OD2	100.1°	90.0°
HB2	CB	SE	HE	135.4°	90.0°
HB3	CB	SE	OD1	104.7°	90.0°
HB3	CB	SE	OD2	150.4°	90.0°
HB3	CB	SE	HE	25.8°	90.0°
OD1	SE	OD2	HE	130.5°	90.0°
O	C	OXT	HXT	1.8°	90.0°

222415

PDB entries from 2024-07-10

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