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Summary Geometry Related PDB entries

SNQ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C9	C10	doub	1.35Å	1.39Å	Aromatic
C9	C8	sing	1.41Å	1.43Å	Aromatic
C10	N	sing	1.37Å	1.41Å	Aromatic
C8	C7	doub	1.35Å	1.38Å	Aromatic
N2	C	trip	1.14Å	1.16Å
N	C7	sing	1.37Å	1.40Å	Aromatic
N	C6	sing	1.40Å	1.44Å
C	C1	sing	1.43Å	1.42Å
C6	C1	doub	1.40Å	1.42Å	Aromatic
C6	C5	sing	1.39Å	1.41Å	Aromatic
C1	C2	sing	1.40Å	1.41Å	Aromatic
C5	C4	doub	1.38Å	1.38Å	Aromatic
C2	C3	doub	1.39Å	1.40Å	Aromatic
C4	C3	sing	1.39Å	1.41Å	Aromatic
C3	N1	sing	1.40Å	1.37Å
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
C4	H3	sing	1.08Å	1.08Å
C5	H4	sing	1.08Å	1.08Å
C7	H5	sing	1.08Å	1.08Å
C8	H6	sing	1.08Å	1.08Å
C10	H7	sing	1.08Å	1.08Å
C2	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C10	C9	C8	108.3°	107.5°
C9	C10	N	107.1°	108.1°
C9	C10	H7	126.4°	125.9°
C10	C9	H9	125.8°	126.3°
C9	C8	C7	107.8°	107.5°
C9	C8	H6	126.1°	126.3°
C8	C9	H9	125.9°	126.2°
C10	N	C7	108.8°	108.7°
C10	N	C6	127.3°	125.6°
N	C10	H7	126.5°	125.9°
C8	C7	N	108.0°	108.2°
C8	C7	H5	126.0°	126.0°
C7	C8	H6	126.1°	126.3°
N2	C	C1	178.3°	180.0°
C7	N	C6	123.9°	125.7°
N	C7	H5	126.0°	125.8°
N	C6	C1	122.4°	120.1°
N	C6	C5	118.7°	120.1°
C	C1	C6	122.0°	120.1°
C	C1	C2	117.5°	120.2°
C1	C6	C5	118.8°	119.8°
C6	C1	C2	120.6°	119.7°
C6	C5	C4	120.8°	120.2°
C6	C5	H4	119.7°	119.9°
C1	C2	C3	119.3°	119.9°
C1	C2	H8	120.3°	120.1°
C5	C4	C3	120.6°	120.4°
C5	C4	H3	119.7°	119.8°
C4	C5	H4	119.6°	119.9°
C2	C3	C4	120.0°	120.1°
C2	C3	N1	120.8°	119.9°
C3	C2	H8	120.4°	120.0°
C4	C3	N1	119.1°	120.0°
C3	C4	H3	119.7°	119.8°
C3	N1	H1	109.5°	120.0°
C3	N1	H2	109.4°	120.0°
H1	N1	H2	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C10	C9	C8	H9	180.0°	180.0°
C9	C10	N	H7	180.0°	179.9°
C10	C9	C8	C7	0.1°	0.2°
C9	C10	N	C7	0.1°	0.2°
C9	C10	N	C6	179.1°	180.0°
C10	C9	C8	H6	179.8°	179.9°
C8	C9	C10	N	0.0°	0.0°
C9	C8	C7	H6	180.0°	179.9°
C9	C8	C7	N	0.2°	0.3°
C9	C8	C7	H5	179.8°	179.9°
C8	C9	C10	H7	180.0°	179.9°
C10	N	C7	C8	0.2°	0.3°
C10	N	C7	C6	179.3°	179.8°
C10	N	C6	C1	41.7°	130.0°
C10	N	C6	C5	139.6°	50.0°
C10	N	C7	H5	179.8°	179.9°
N	C10	C9	H9	180.0°	180.0°
C8	C7	N	H5	180.0°	179.6°
C8	C7	N	C6	179.1°	179.9°
C7	C8	C9	H9	179.8°	179.8°
N2	C	C1	C6	173.4°	118.1°
N2	C	C1	C2	7.2°	61.8°
C7	N	C6	C1	137.5°	50.3°
C7	N	C6	C5	41.2°	129.8°
N	C7	C8	H6	179.8°	179.7°
C7	N	C10	H7	179.9°	179.9°
N	C6	C1	C	1.2°	0.0°
N	C6	C1	C5	178.7°	180.0°
N	C6	C1	C2	178.2°	180.0°
N	C6	C5	C4	178.3°	180.0°
N	C6	C5	H4	1.7°	0.0°
C6	N	C7	H5	0.9°	0.3°
C6	N	C10	H7	0.9°	0.1°
C	C1	C6	C2	179.4°	180.0°
C	C1	C6	C5	179.9°	180.0°
C	C1	C2	C3	179.1°	180.0°
C	C1	C2	H8	0.9°	0.0°
C1	C6	C5	C4	0.4°	0.0°
C6	C1	C2	C3	0.3°	0.0°
C1	C6	C5	H4	179.6°	180.0°
C6	C1	C2	H8	179.7°	180.0°
C5	C6	C1	C2	0.5°	0.0°
C6	C5	C4	H4	180.0°	180.0°
C6	C5	C4	C3	0.4°	0.0°
C6	C5	C4	H3	179.6°	179.8°
C1	C2	C3	H8	180.0°	180.0°
C1	C2	C3	C4	1.2°	0.0°
C1	C2	C3	N1	175.6°	179.8°
C5	C4	C3	C2	1.3°	0.0°
C5	C4	C3	H3	180.0°	179.7°
C5	C4	C3	N1	175.6°	179.8°
C2	C3	C4	N1	176.8°	179.8°
C2	C3	N1	H1	180.0°	179.7°
C2	C3	N1	H2	60.0°	0.5°
C2	C3	C4	H3	178.7°	179.8°
C4	C3	N1	H1	3.2°	0.1°
C4	C3	N1	H2	123.2°	179.8°
C3	C4	C5	H4	179.6°	180.0°
C4	C3	C2	H8	178.8°	180.0°
C3	N1	H1	H2	120.0°	179.8°
N1	C3	C4	H3	4.4°	0.0°
N1	C3	C2	H8	4.4°	0.3°
H3	C4	C5	H4	0.4°	0.2°
H5	C7	C8	H6	0.2°	0.1°
H6	C8	C9	H9	0.2°	0.1°
H7	C10	C9	H9	0.0°	0.1°

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PDB entries from 2024-10-16

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