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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.56Å
C1H11sing1.09Å1.10Å
C1H12sing1.09Å1.10Å
C1H13sing1.09Å1.10Å
C2C3sing1.53Å1.58Å
C2H21sing1.09Å1.10Å
C2H22sing1.09Å1.10Å
C3C4sing1.53Å1.57Å
C3C5sing1.51Å1.55Å
C3H3sing1.09Å1.10Å
C4H41sing1.09Å1.10Å
C4H42sing1.09Å1.10Å
C4H43sing1.09Å1.10Å
C5O1sing1.34Å1.39Å
C5O2doub1.21Å1.23Å
O1HO1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1H11109.5°109.5°
C2C1H12109.4°109.4°
C2C1H13109.5°109.5°
C1C2C3120.3°109.5°
C1C2H21106.0°109.5°
C1C2H22103.5°109.5°
H11C1H12109.4°109.5°
H11C1H13109.5°109.5°
H12C1H13109.5°109.5°
C3C2H21106.0°109.5°
C3C2H22103.4°109.5°
C2C3C4112.6°109.5°
C2C3C5113.0°109.5°
C2C3H3104.9°109.5°
H21C2H22118.4°109.4°
C4C3C5110.1°109.5°
C4C3H3108.1°109.5°
C3C4H41109.5°109.4°
C3C4H42109.5°109.4°
C3C4H43109.4°109.4°
C5C3H3107.7°109.5°
C3C5O1112.4°120.0°
C3C5O2123.3°120.0°
H41C4H42109.5°109.5°
H41C4H43109.5°109.5°
H42C4H43109.5°109.5°
O1C5O2124.3°120.0°
C5O1HO1109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1H11H12120.0°120.0°
C2C1H11H13120.0°120.0°
C2C1H12H13120.0°120.0°
C1C2C3H21120.0°120.0°
C1C2C3H22114.7°120.0°
C1C2H21H22115.5°120.0°
C1C2C3C40.2°65.0°
C1C2C3C5125.8°175.0°
C1C2C3H3117.2°55.0°
H11C1H12H13120.0°120.0°
H11C1C2C317.1°60.0°
H11C1C2H21137.1°60.0°
H11C1C2H2297.6°180.0°
H12C1C2C3137.0°60.0°
H12C1C2H21103.0°180.0°
H12C1C2H2222.4°60.0°
H13C1C2C3103.0°180.0°
H13C1C2H2117.1°60.0°
H13C1C2H22142.4°60.0°
C3C2H21H22115.5°120.0°
C2C3C4C5127.2°120.0°
C2C3C4H3115.4°120.0°
C2C3C5H3115.4°120.0°
C2C3C4H41154.4°60.0°
C2C3C4H4234.4°60.0°
C2C3C4H4385.6°180.0°
C2C3C5O1147.7°180.0°
C2C3C5O232.3°0.1°
H21C2C3C4120.2°175.0°
H21C2C3C5114.2°54.9°
H21C2C3H32.8°65.0°
H22C2C3C4114.5°55.0°
H22C2C3C511.1°65.0°
H22C2C3H3128.1°175.0°
C4C3C5H3117.7°120.0°
C3C4H41H42120.0°119.9°
C3C4H41H43120.0°120.0°
C3C4H42H43120.0°119.9°
C4C3C5O185.3°60.0°
C4C3C5O294.6°120.0°
C5C3C4H4127.2°60.0°
C5C3C4H4292.8°180.0°
C5C3C4H43147.2°60.0°
C3C5O1O2179.9°179.9°
C3C5O1HO1180.0°180.0°
H3C3C4H4190.2°180.0°
H3C3C4H42149.8°60.0°
H3C3C4H4329.8°60.0°
H3C3C5O132.3°60.0°
H3C3C5O2147.7°120.0°
H41C4H42H43120.0°120.1°
O2C5O1HO10.0°0.0°

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PDB entries from 2024-07-10

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