Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

SM9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2C1sing1.53Å1.54Å
N20C1sing1.47Å1.49Å
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
O4C2sing1.43Å1.42Å
C2C3sing1.53Å1.54Å
C2H2sing1.09Å1.10Å
N5C3sing1.46Å1.49Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
C6N5sing1.47Å1.49Å
S39N5sing1.66Å1.76Å
C6C7sing1.53Å1.54Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
O36C7sing1.43Å1.41Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C13C8doub1.38Å1.42ÅAromatic
C8C9sing1.38Å1.42ÅAromatic
C8S39sing1.76Å1.83Å
C10C9doub1.38Å1.41ÅAromatic
C9C15sing1.51Å1.52Å
C11C10sing1.38Å1.41ÅAromatic
C10H10sing1.08Å1.08Å
C12C11doub1.38Å1.41ÅAromatic
C11H11sing1.08Å1.08Å
C12C13sing1.38Å1.41ÅAromatic
C12H12sing1.08Å1.08Å
C14C13sing1.51Å1.52Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C14H14Bsing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C15H15Bsing1.09Å1.10Å
C25C16sing1.54Å1.53Å
C22C16sing1.54Å1.54Å
C16C21sing1.53Å1.54Å
C16C17sing1.53Å1.55Å
C17C18sing1.53Å1.54Å
C17H17sing1.09Å1.10Å
C17H17Asing1.09Å1.10Å
C18C19sing1.53Å1.54Å
C18H18sing1.09Å1.10Å
C18H18Asing1.09Å1.10Å
N20C19sing1.47Å1.49Å
C19H19sing1.09Å1.10Å
C19H19Asing1.09Å1.10Å
C21N20sing1.47Å1.49Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C23C22sing1.55Å1.54Å
C22H22sing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
N24C23sing1.49Å1.47Å
C23H23sing1.09Å1.10Å
C23H23Asing1.09Å1.10Å
C26N24sing1.38Å1.37Å
N24C25sing1.48Å1.47Å
C25H25sing1.09Å1.10Å
C25H25Asing1.09Å1.10Å
N31C26doub1.33Å1.35ÅAromatic
C27C26sing1.42Å1.42ÅAromatic
C28C27sing1.42Å1.42ÅAromatic
C27C32doub1.40Å1.42ÅAromatic
N29C28sing1.34Å1.34ÅAromatic
C35C28doub1.40Å1.42ÅAromatic
N29C30doub1.31Å1.34ÅAromatic
C30N31sing1.32Å1.34ÅAromatic
C30H30sing1.08Å1.08Å
C33C32sing1.36Å1.42ÅAromatic
C32H32sing1.08Å1.08Å
C34C33doub1.39Å1.41ÅAromatic
C33H33sing1.08Å1.08Å
C35C34sing1.36Å1.41ÅAromatic
C34H34sing1.08Å1.08Å
C35H35sing1.08Å1.08Å
O36C38sing1.43Å1.42Å
C37C38sing1.53Å1.54Å
C37H37sing1.09Å1.10Å
C37H37Asing1.09Å1.10Å
C37H37Bsing1.09Å1.10Å
C38H38sing1.09Å1.10Å
C38H38Asing1.09Å1.10Å
O41S39doub1.42Å1.47Å
S39O40doub1.42Å1.47Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1N20115.6°109.4°
C2C1H1107.5°109.4°
C2C1H1A107.5°109.4°
C1C2O4110.0°109.5°
C1C2C3108.0°109.5°
C1C2H2110.4°109.5°
N20C1H1107.5°109.5°
N20C1H1A107.5°109.5°
C1N20C19110.4°110.9°
C1N20C21113.7°111.0°
H1C1H1A111.4°109.5°
O4C2C3110.2°109.5°
O4C2H2108.2°109.5°
C2O4HO4109.5°114.0°
C3C2H2110.1°109.4°
C2C3N5114.9°109.5°
C2C3H3107.7°109.4°
C2C3H3A107.7°109.4°
N5C3H3107.7°109.5°
N5C3H3A107.7°109.5°
C3N5C6114.5°120.0°
C3N5S39122.7°120.0°
H3C3H3A111.2°109.5°
C6N5S39122.8°120.1°
N5C6C7112.3°109.4°
N5C6H6108.5°109.4°
N5C6H6A108.5°109.5°
N5S39C8100.3°107.3°
N5S39O41108.8°106.5°
N5S39O40107.3°106.4°
C7C6H6108.5°109.5°
C7C6H6A108.5°109.5°
C6C7O36108.4°109.5°
C6C7H7109.9°109.5°
C6C7H7A109.8°109.5°
H6C6H6A110.4°109.5°
O36C7H7109.9°109.5°
O36C7H7A109.8°109.4°
C7O36C38111.9°114.0°
H7C7H7A109.1°109.5°
C13C8C9119.7°120.0°
C13C8S39119.6°120.0°
C8C13C12120.1°120.0°
C8C13C14122.9°120.0°
C9C8S39120.7°120.0°
C8C9C10119.8°120.0°
C8C9C15123.0°120.0°
C8S39O41110.8°106.4°
C8S39O40111.1°106.4°
C10C9C15117.2°120.0°
C9C10C11120.1°120.0°
C9C10H10120.0°120.0°
C9C15H15109.5°109.5°
C9C15H15A109.5°109.5°
C9C15H15B109.5°109.5°
C11C10H10119.9°120.0°
C10C11C12120.4°120.0°
C10C11H11119.8°119.9°
C12C11H11119.8°120.1°
C11C12C13120.0°120.0°
C11C12H12120.0°120.0°
C13C12H12120.0°120.0°
C12C13C14117.0°120.0°
C13C14H14109.5°109.5°
C13C14H14A109.5°109.5°
C13C14H14B109.5°109.5°
H14C14H14A109.5°109.5°
H14C14H14B109.5°109.4°
H14AC14H14B109.5°109.4°
H15C15H15A109.5°109.5°
H15C15H15B109.5°109.4°
H15AC15H15B109.5°109.5°
C25C16C22103.1°105.6°
C25C16C21110.6°110.4°
C25C16C17111.6°110.3°
C16C25N24106.5°106.9°
C16C25H25110.5°110.0°
C16C25H25A110.5°110.0°
C22C16C21110.6°110.0°
C22C16C17109.3°109.9°
C16C22C23105.6°102.8°
C16C22H22110.8°110.7°
C16C22H22A110.8°110.7°
C21C16C17111.4°110.5°
C16C21N20115.4°109.6°
C16C21H21107.5°109.4°
C16C21H21A107.5°109.4°
C16C17C18112.6°109.2°
C16C17H17108.4°109.5°
C16C17H17A108.4°109.5°
C18C17H17108.4°109.5°
C18C17H17A108.4°109.5°
C17C18C19109.5°109.2°
C17C18H18109.5°109.5°
C17C18H18A109.5°109.6°
H17C17H17A110.5°109.6°
C19C18H18109.5°109.5°
C19C18H18A109.4°109.5°
C18C19N20113.0°109.6°
C18C19H19108.3°109.4°
C18C19H19A108.3°109.4°
H18C18H18A109.5°109.6°
N20C19H19108.3°109.5°
N20C19H19A108.3°109.5°
C19N20C21114.2°111.2°
H19C19H19A110.6°109.4°
N20C21H21107.6°109.5°
N20C21H21A107.6°109.4°
H21C21H21A111.3°109.4°
C23C22H22110.8°110.8°
C23C22H22A110.8°110.9°
C22C23N24106.5°103.3°
C22C23H23110.5°110.6°
C22C23H23A110.5°110.7°
H22C22H22A108.1°110.7°
N24C23H23110.5°110.7°
N24C23H23A110.5°110.8°
C23N24C26123.9°111.0°
C23N24C25109.5°105.9°
H23C23H23A108.4°110.6°
C26N24C25124.5°111.0°
N24C26N31114.8°120.9°
N24C26C27126.2°120.9°
N24C25H25110.5°110.0°
N24C25H25A110.5°110.0°
H25C25H25A108.5°110.0°
N31C26C27119.1°118.1°
C26N31C30119.1°121.5°
C26C27C28118.6°118.2°
C26C27C32122.5°122.1°
C28C27C32118.9°119.7°
C27C28N29119.6°118.8°
C27C28C35120.7°119.3°
C27C32C33120.6°119.5°
C27C32H32119.7°120.2°
N29C28C35119.7°122.0°
C28N29C30118.9°120.4°
C28C35C34120.2°119.6°
C28C35H35119.9°120.2°
N29C30N31124.7°123.0°
N29C30H30117.7°118.5°
N31C30H30117.6°118.5°
C33C32H32119.7°120.2°
C32C33C34120.2°120.9°
C32C33H33119.9°119.6°
C34C33H33119.9°119.5°
C33C34C35119.5°121.0°
C33C34H34120.3°119.5°
C35C34H34120.2°119.5°
C34C35H35119.9°120.2°
O36C38C37107.7°109.5°
O36C38H38110.1°109.5°
O36C38H38A110.1°109.5°
C38C37H37109.5°109.5°
C38C37H37A109.5°109.4°
C38C37H37B109.5°109.5°
C37C38H38110.0°109.5°
C37C38H38A110.0°109.5°
H37C37H37A109.5°109.5°
H37C37H37B109.5°109.5°
H37AC37H37B109.5°109.5°
H38C38H38A108.9°109.4°
O41S39O40117.2°123.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1N20H1120.0°120.0°
C2C1N20H1A120.0°119.9°
C2C1H1H1A117.5°120.0°
C1C2O4C3119.0°120.0°
C1C2O4H2120.6°120.0°
C1C2C3H2120.6°120.0°
C1C2C3N5154.0°175.6°
C1C2C3H334.0°55.6°
C1C2C3H3A86.0°64.3°
C1C2O4HO4180.0°56.7°
C2C1N20C19169.5°165.5°
C2C1N20C2160.7°70.4°
N20C1H1H1A117.5°120.0°
N20C1C2O452.0°62.5°
N20C1C2C3172.3°177.5°
N20C1C2H267.3°57.5°
C1N20C21C16174.6°175.1°
C1N20C19C18178.4°173.7°
C1N20C19C21129.6°124.0°
C1N20C19H1961.6°66.2°
C1N20C19H19A58.4°53.7°
C1N20C21H2165.4°55.1°
C1N20C21H21A54.6°64.9°
H1C1C2O468.0°57.6°
H1C1C2C352.3°62.4°
H1C1C2H2172.7°177.6°
H1C1N20C1949.5°45.5°
H1C1N20C21179.3°169.7°
H1AC1C2O4172.0°177.6°
H1AC1C2C367.7°57.6°
H1AC1C2H252.7°62.4°
H1AC1N20C1970.5°74.6°
H1AC1N20C2159.3°49.6°
O4C2C3H2119.3°120.0°
O4C2C3N585.8°64.4°
O4C2C3H3154.1°175.6°
O4C2C3H3A34.1°55.7°
C2C3N5H3120.0°120.0°
C2C3N5H3A120.0°120.0°
C2C3H3H3A117.8°119.9°
C3C2O4HO461.0°63.3°
C2C3N5C698.8°63.6°
C2C3N5S3980.7°116.3°
H2C2C3N533.4°55.6°
H2C2C3H386.6°64.4°
H2C2C3H3A153.4°175.6°
H2C2O4HO459.4°176.7°
N5C3H3H3A117.8°120.1°
C3N5C6S39179.6°180.0°
C3N5C6C780.5°73.0°
C3N5C6H639.5°167.0°
C3N5C6H6A159.5°47.0°
C3N5S39C864.0°84.4°
C3N5S39O41179.7°29.2°
C3N5S39O4052.0°162.1°
H3C3N5C6141.2°56.3°
H3C3N5S3939.3°123.7°
H3AC3N5C621.2°176.4°
H3AC3N5S39159.3°3.7°
N5C6C7H6120.0°119.9°
N5C6C7H6A120.0°120.0°
N5C6H6H6A118.8°120.0°
N5C6C7O36153.8°64.9°
N5C6C7H733.8°175.0°
N5C6C7H7A86.2°55.0°
C6N5S39C8115.5°95.5°
C6N5S39O410.8°150.9°
C6N5S39O40128.4°17.9°
S39N5C6C799.9°107.0°
S39N5C6H6140.1°12.9°
S39N5C6H6A20.1°133.0°
N5S39C8C1371.7°93.0°
N5S39C8C9107.0°87.2°
N5S39C8O41114.8°113.6°
N5S39C8O40113.2°113.5°
N5S39O41O40121.8°123.0°
C7C6H6H6A118.8°120.1°
C6C7O36H7120.0°120.0°
C6C7O36H7A120.0°120.0°
C6C7H7H7A120.5°120.0°
C6C7O36C38175.8°180.0°
H6C6C7O3686.2°54.9°
H6C6C7H7153.8°65.1°
H6C6C7H7A33.8°174.9°
H6AC6C7O3633.9°175.0°
H6AC6C7H786.1°55.0°
H6AC6C7H7A153.8°65.0°
O36C7H7H7A120.4°120.0°
C7O36C38C37170.9°180.0°
C7O36C38H3869.1°60.0°
C7O36C38H38A50.9°60.0°
H7C7O36C3864.2°60.0°
H7AC7O36C3855.8°60.0°
C13C8C9S39178.7°179.7°
C13C8C9C100.8°0.3°
C13C8C9C15179.4°179.7°
C8C13C12C110.4°0.6°
C8C13C12C14180.0°179.4°
C8C13C12H12179.5°179.7°
C8C13C14H1490.0°87.4°
C8C13C14H14A150.0°32.7°
C8C13C14H14B30.0°152.6°
C13C8S39O4143.1°20.6°
C13C8S39O40175.1°153.5°
C8C9C10C15179.8°180.0°
C8C9C10C111.1°0.0°
C8C9C10H10178.9°180.0°
C9C8C13C120.5°0.6°
C9C8C13C14179.5°180.0°
C8C9C15H1589.9°83.6°
C8C9C15H15A150.1°156.4°
C8C9C15H15B30.1°36.4°
C9C8S39O41138.2°159.1°
C9C8S39O406.2°26.3°
S39C8C9C10179.5°179.9°
S39C8C9C150.7°0.0°
S39C8C13C12179.2°179.6°
S39C8C13C140.8°0.3°
C8S39O41O40128.8°122.9°
C9C10C11H10180.0°180.0°
C9C10C11C121.0°0.0°
C9C10C11H11179.0°180.0°
C10C9C15H1589.9°96.5°
C10C9C15H15A30.1°23.5°
C10C9C15H15B150.1°143.6°
C15C9C10C11179.1°179.9°
C15C9C10H100.8°0.0°
C9C15H15H15A120.0°120.0°
C9C15H15H15B120.0°120.0°
C9C15H15AH15B120.0°120.1°
C10C11C12H11180.0°180.0°
C10C11C12C130.7°0.3°
C10C11C12H12179.3°180.0°
H10C10C11C12179.0°180.0°
H10C10C11H111.0°0.1°
C11C12C13H12180.0°179.7°
C11C12C13C14179.6°180.0°
H11C11C12C13179.3°179.7°
H11C11C12H120.7°0.0°
C12C13C14H1490.0°93.2°
C12C13C14H14A30.0°146.7°
C12C13C14H14B150.0°26.7°
H12C12C13C140.5°0.3°
C13C14H14H14A120.0°120.1°
C13C14H14H14B120.0°120.0°
C13C14H14AH14B120.0°120.0°
H14C14H14AH14B120.0°119.9°
H15C15H15AH15B120.0°119.9°
C25C16C22C21118.3°119.1°
C25C16C22C17118.8°119.0°
C25C16C21C17124.7°122.3°
C25C16C17C1874.1°66.0°
C25C16C17H17165.9°174.0°
C25C16C17H17A45.9°53.8°
C25C16C21N2079.5°64.6°
C25C16C21H2140.5°55.5°
C25C16C21H21A160.5°175.4°
C25C16C22C2328.0°21.7°
C25C16C22H22148.0°140.1°
C25C16C22H22A91.9°96.8°
C16C25N24C2319.2°25.2°
C16C25N24C26145.3°145.8°
C16C25N24H25120.0°119.4°
C16C25N24H25A120.0°119.4°
C16C25H25H25A121.2°121.3°
C22C16C21C17121.7°121.6°
C22C16C17C18172.5°177.9°
C22C16C17H1752.5°58.0°
C22C16C17H17A67.5°62.2°
C22C16C21N20166.9°179.3°
C22C16C21H2173.1°60.6°
C22C16C21H21A46.9°59.3°
C16C22C23H22120.0°118.3°
C16C22C23H22A120.0°118.4°
C16C22H22H22A121.6°123.1°
C16C22C23N2417.2°37.1°
C16C22C23H23102.8°81.4°
C16C22C23H23A137.3°155.7°
C22C16C25N2429.1°1.3°
C22C16C25H2590.9°120.7°
C22C16C25H25A149.0°118.0°
C21C16C17C1850.1°56.3°
C21C16C17H1769.9°63.7°
C21C16C17H17A170.1°176.2°
C16C21N20C1946.7°60.9°
C16C21N20H21120.0°120.0°
C16C21N20H21A120.0°120.0°
C16C21H21H21A117.6°119.9°
C21C16C22C23146.3°140.8°
C21C16C22H2293.7°100.8°
C21C16C22H22A26.3°22.3°
C21C16C25N24147.3°117.5°
C21C16C25H2527.3°1.8°
C21C16C25H25A92.8°123.1°
C16C17C18H17120.0°119.9°
C16C17C18H17A120.0°119.9°
C16C17H17H17A118.7°120.1°
C16C17C18C1955.3°56.9°
C16C17C18H18175.3°176.8°
C16C17C18H18A64.6°63.0°
C17C16C21N2045.2°57.8°
C17C16C21H21165.2°177.8°
C17C16C21H21A74.8°62.3°
C17C16C22C2390.7°97.3°
C17C16C22H2229.3°21.1°
C17C16C22H22A149.3°144.2°
C17C16C25N2488.2°120.0°
C17C16C25H25151.9°120.6°
C17C16C25H25A31.8°0.7°
C18C17H17H17A118.7°120.1°
C17C18C19H18120.0°119.9°
C17C18C19H18A120.0°119.9°
C17C18H18H18A120.0°120.2°
C17C18C19N2055.9°59.7°
C17C18C19H1964.1°60.4°
C17C18C19H19A175.9°179.7°
H17C17C18C1964.6°63.1°
H17C17C18H1855.4°56.8°
H17C17C18H18A175.4°177.0°
H17AC17C18C19175.3°176.7°
H17AC17C18H1864.7°63.4°
H17AC17C18H18A55.3°56.8°
C19C18H18H18A120.0°120.1°
C18C19N20H19120.0°120.0°
C18C19N20H19A120.0°120.0°
C18C19H19H19A118.5°119.9°
C18C19N20C2152.0°62.2°
H18C18C19N20175.9°179.6°
H18C18C19H1955.9°59.5°
H18C18C19H19A64.1°60.4°
H18AC18C19N2064.1°60.3°
H18AC18C19H19175.9°179.7°
H18AC18C19H19A55.9°59.8°
N20C19H19H19A118.6°120.0°
C19N20C21H21166.7°179.1°
C19N20C21H21A73.3°59.2°
H19C19N20C2168.0°57.8°
H19AC19N20C21172.0°177.8°
N20C21H21H21A117.6°120.0°
C23C22H22H22A121.6°123.5°
C22C23N24H23120.0°118.4°
C22C23N24H23A120.0°118.5°
C22C23H23H23A121.2°123.0°
C22C23N24C26163.5°159.5°
C22C23N24C251.1°38.9°
H22C22C23N24137.2°155.4°
H22C22C23H2317.2°36.9°
H22C22C23H23A102.7°86.0°
H22AC22C23N24102.7°81.3°
H22AC22C23H23137.3°160.2°
H22AC22C23H23A17.3°37.3°
N24C23H23H23A121.2°123.2°
C23N24C26C25162.3°117.4°
C23N24C25H25100.8°144.6°
C23N24C25H25A139.2°94.1°
C23N24C26N315.7°55.6°
C23N24C26C27174.5°124.7°
H23C23N24C2643.5°41.0°
H23C23N24C25121.1°79.5°
H23AC23N24C2676.5°82.0°
H23AC23N24C25118.9°157.5°
C26N24C25H2594.7°94.9°
C26N24C25H25A25.3°26.4°
N24C26N31C27179.9°179.7°
N24C26C27C28179.8°180.0°
N24C26C27C320.2°0.0°
N24C26N31C30179.8°179.8°
N24C25H25H25A121.2°121.2°
C25N24C26N31156.6°61.8°
C25N24C26C2723.2°117.9°
N31C26C27C280.1°0.3°
N31C26C27C32179.9°179.7°
C26N31C30N290.0°0.5°
C26N31C30H30179.9°179.7°
C26C27C28C32180.0°180.0°
C26C27C28N290.1°0.0°
C26C27C28C35179.9°180.0°
C27C26N31C300.1°0.5°
C26C27C32C33179.9°180.0°
C26C27C32H320.1°0.0°
C27C28N29C35179.8°179.9°
C27C28N29C300.1°0.0°
C28C27C32C330.1°0.0°
C28C27C32H32179.9°180.0°
C27C28C35C340.2°0.0°
C27C28C35H35179.8°180.0°
C32C27C28N29179.9°180.0°
C32C27C28C350.2°0.0°
C27C32C33H32180.0°180.0°
C27C32C33C340.3°0.0°
C27C32C33H33179.7°180.0°
C28N29C30N310.1°0.2°
C28N29C30H30179.9°179.9°
N29C28C35C34179.9°180.0°
N29C28C35H350.1°0.1°
C35C28N29C30179.8°179.9°
C28C35C34C330.1°0.0°
C28C35C34H35180.0°180.0°
C28C35C34H34179.9°180.0°
N29C30N31H30180.0°179.9°
C32C33C34H33180.0°180.0°
C32C33C34C350.3°0.0°
C32C33C34H34179.7°180.0°
H32C32C33C34179.6°180.0°
H32C32C33H330.3°0.0°
C33C34C35H34180.0°180.0°
C33C34C35H35179.9°180.0°
H33C33C34C35179.7°180.0°
H33C33C34H340.3°0.0°
H34C34C35H350.1°0.0°
O36C38C37H38120.0°120.0°
O36C38C37H38A120.0°120.0°
O36C38C37H37180.0°180.0°
O36C38C37H37A60.0°60.0°
O36C38C37H37B60.0°60.0°
O36C38H38H38A120.7°120.0°
C38C37H37H37A120.0°119.9°
C38C37H37H37B120.0°120.0°
C38C37H37AH37B120.0°120.0°
C37C38H38H38A120.7°120.0°
H37C37H37AH37B120.0°120.0°
H37C37C38H3860.0°60.0°
H37C37C38H38A60.0°59.9°
H37AC37C38H38180.0°180.0°
H37AC37C38H38A60.0°60.0°
H37BC37C38H3860.0°60.0°
H37BC37C38H38A180.0°180.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon