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SL3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N6C6sing1.41Å1.02Å
N6H61sing1.00Å1.01Å
N6H62sing1.00Å1.00Å
C6N1doub1.35Å1.43ÅAromatic
C6C5sing1.39Å1.70ÅAromatic
N1C2sing1.35Å1.34ÅAromatic
C2N3doub1.35Å1.33ÅAromatic
C2H2sing1.08Å1.08Å
N3C4sing1.34Å1.36ÅAromatic
C4C5doub1.39Å1.36ÅAromatic
C4N9sing1.37Å1.32ÅAromatic
C5N7sing1.37Å1.27ÅAromatic
N7C8doub1.32Å1.33ÅAromatic
C8N9sing1.37Å1.31ÅAromatic
C8H8sing1.08Å1.09Å
N9C1'sing1.46Å1.44Å
C1'C2'sing1.52Å1.47Å
C1'O4'sing1.44Å1.37Å
C1'H1'sing1.09Å1.09Å
C2'C3'sing1.51Å1.53Å
C2'H21'sing1.09Å1.07Å
C2'H22'sing1.10Å1.18Å
O4'C4'sing1.44Å1.47Å
C4'C5'sing1.52Å1.54Å
C4'C3'sing1.52Å1.49Å
C4'H4'sing1.10Å0.98Å
C5'O5'sing1.42Å1.46Å
C5'H51'sing1.09Å1.23Å
C5'H52'sing1.09Å0.97Å
O5'PAsing1.62Å1.59Å
PAO2Adoub1.50Å1.48Å
PAO1Asing1.62Å1.88Å
PAO3Asing1.62Å1.60Å
O3APBsing1.62Å1.60Å
PBO2Bdoub1.50Å1.48Å
PBO1Bsing1.62Å1.48Å
PBO3Bsing1.62Å1.50Å
C3'O3'sing1.41Å1.43Å
C3'H3'sing1.10Å0.99Å
O3'C1sing1.36Å1.36Å
C1OCdoub1.23Å1.23Å
C1CAsing1.45Å1.50Å
CACBdoub1.33Å1.50Å
CACEsing1.50Å1.50Å
CBCCsing1.50Å1.50Å
CBHCBsing1.08Å1.08Å
CCCC1sing1.54Å1.53Å
CCCC2sing1.54Å1.53Å
CCNDsing1.51Å1.47Å
CC1H1CCsing1.09Å1.09Å
CC1H2CCsing1.09Å1.09Å
CC1H3CCsing1.09Å1.09Å
CC2H4CCsing1.09Å1.09Å
CC2H5CCsing1.09Å1.09Å
CC2H6CCsing1.09Å1.09Å
NDORsing1.46Å1.30Å
NDCEsing1.51Å1.47Å
ORHORsing0.97Å0.96Å
CECE2sing1.54Å1.53Å
CECE1sing1.54Å1.53Å
CE2H4CEsing1.09Å1.09Å
CE2H5CEsing1.09Å1.09Å
CE2H6CEsing1.09Å1.09Å
CE1H1CEsing1.09Å1.09Å
CE1H2CEsing1.09Å1.09Å
CE1H3CEsing1.09Å1.46Å
HO1O1Bsing0.98Å0.95Å
HO2O3Bsing0.98Å0.95Å
HO3O1Asing0.98Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6N6H61116.7°119.4°
C6N6H62116.6°119.4°
N6C6N1148.6°120.2°
N6C6C5117.7°120.7°
H61N6H62126.6°120.9°
N1C6C591.9°119.1°
C6N1C2138.3°117.5°
C6C5C4130.2°116.9°
C6C5N7113.8°132.4°
N1C2N3121.4°128.8°
N1C2H2122.8°115.6°
N3C2H2115.8°115.6°
C2N3C4118.0°110.4°
N3C4C5118.4°127.2°
N3C4N9136.2°127.5°
C5C4N9104.5°105.3°
C4C5N7113.2°110.7°
C4N9C8106.6°106.8°
C4N9C1'125.1°127.0°
C5N7C8103.2°104.8°
N7C8N9112.4°112.3°
N7C8H8122.9°125.5°
N9C8H8123.2°122.1°
C8N9C1'127.1°126.2°
N9C1'C2'118.4°113.8°
N9C1'O4'103.6°109.4°
N9C1'H1'102.2°105.1°
C2'C1'O4'90.6°107.7°
C2'C1'H1'108.7°111.7°
C1'C2'C3'105.7°103.2°
C1'C2'H21'103.5°114.1°
C1'C2'H22'124.9°110.0°
O4'C1'H1'134.7°109.1°
C1'O4'C4'108.0°108.1°
C3'C2'H21'110.3°112.8°
C3'C2'H22'108.4°109.9°
C2'C3'C4'98.0°101.8°
C2'C3'O3'113.3°111.3°
C2'C3'H3'116.5°110.2°
H21'C2'H22'103.6°106.8°
O4'C4'C5'108.7°109.7°
O4'C4'C3'102.2°105.5°
O4'C4'H4'140.4°108.2°
C5'C4'C3'107.2°113.6°
C5'C4'H4'94.9°108.6°
C4'C5'O5'106.1°108.7°
C4'C5'H51'113.0°110.1°
C4'C5'H52'114.4°110.1°
C3'C4'H4'100.4°111.1°
C4'C3'O3'123.0°112.4°
C4'C3'H3'87.0°111.5°
O5'C5'H51'130.2°109.1°
O5'C5'H52'78.2°109.2°
C5'O5'PA121.2°120.0°
H51'C5'H52'110.3°109.6°
O5'PAO2A105.7°114.8°
O5'PAO1A107.8°104.4°
O5'PAO3A106.9°104.6°
O2APAO1A130.7°114.3°
O2APAO3A113.5°114.2°
O1APAO3A89.8°103.3°
PAO1AHO3109.5°118.9°
PAO3APB134.5°131.0°
O3APBO2B100.0°114.7°
O3APBO1B107.6°103.1°
O3APBO3B103.4°103.4°
O2BPBO1B119.3°115.2°
O2BPBO3B114.1°115.3°
O1BPBO3B110.3°103.5°
PBO1BHO1109.5°119.0°
PBO3BHO2109.5°119.0°
O3'C3'H3'115.8°109.4°
C3'O3'C1111.6°115.9°
O3'C1OC120.8°126.8°
O3'C1CA117.3°109.1°
OCC1CA121.4°124.1°
C1CACB125.5°122.0°
C1CACE123.4°125.9°
CBCACE109.4°112.0°
CACBCC112.3°110.4°
CACBHCB126.6°125.3°
CACEND99.3°104.0°
CACECE2116.7°110.3°
CACECE1114.3°113.0°
CCCBHCB119.9°124.2°
CBCCCC1110.0°109.8°
CBCCCC2111.5°111.2°
CBCCND97.6°104.8°
CC1CCCC2114.6°107.3°
CC1CCND114.9°108.3°
CCCC1H1CC103.9°110.6°
CCCC1H2CC118.2°110.6°
CCCC1H3CC108.6°110.6°
CC2CCND107.0°115.2°
CCCC2H4CC100.0°110.6°
CCCC2H5CC113.2°110.6°
CCCC2H6CC104.6°110.6°
CCNDOR118.5°107.0°
CCNDCE121.4°106.4°
H1CCCC1H2CC99.6°108.3°
H1CCCC1H3CC121.8°108.4°
H2CCCC1H3CC105.4°108.3°
H4CCCC2H5CC108.5°108.3°
H4CCCC2H6CC109.2°108.3°
H5CCCC2H6CC119.6°108.3°
ORNDCE119.7°107.2°
NDORHOR98.5°100.1°
NDCECE2116.1°107.8°
NDCECE1108.5°114.4°
CE2CECE1102.3°107.3°
CECE2H4CE110.1°110.6°
CECE2H5CE115.2°110.6°
CECE2H6CE113.8°110.6°
CECE1H1CE111.6°110.6°
CECE1H2CE101.0°110.6°
CECE1H3CE122.1°110.6°
H4CECE2H5CE107.0°108.3°
H4CECE2H6CE96.1°108.3°
H5CECE2H6CE112.6°108.4°
H1CECE1H2CE110.6°108.4°
H1CECE1H3CE99.9°108.3°
H2CECE1H3CE111.9°108.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6N6H61H62176.8°173.7°
N6C6N1C5161.3°179.9°
N6C6N1C2173.5°180.0°
N6C6C5C4176.0°180.0°
N6C6C5N716.2°0.0°
H61N6C6N1159.7°68.0°
H61N6C6C50.9°111.9°
H62N6C6N123.1°118.2°
H62N6C6C5178.1°61.9°
C6N1C2N38.1°0.1°
C6N1C2H2171.8°180.0°
N1C6C5C414.9°0.1°
N1C6C5N7174.7°180.0°
C5C6N1C212.2°0.1°
C6C5C4N314.0°0.1°
C6C5C4N7159.9°180.0°
C6C5C4N9157.0°180.0°
C6C5N7C8161.3°180.0°
N1C2N3H2179.9°180.0°
N1C2N3C41.7°0.0°
C2N3C4C55.2°0.1°
C2N3C4N9162.0°180.0°
H2C2N3C4178.2°180.0°
N3C4C5N9171.0°179.9°
N3C4C5N7173.8°180.0°
N3C4N9C8170.9°179.9°
N3C4N9C1'21.1°0.1°
C4C5N7C82.0°0.0°
C5C4N9C82.4°0.0°
C5C4N9C1'170.4°180.0°
N9C4C5N72.9°0.0°
C4N9C8N71.4°0.0°
C4N9C8C1'167.6°180.0°
C4N9C8H8164.7°180.0°
C4N9C1'C2'116.0°92.5°
C4N9C1'O4'145.9°147.0°
C4N9C1'H1'3.4°29.9°
C5N7C8N90.3°0.0°
C5N7C8H8166.5°180.0°
N7C8N9H8166.1°180.0°
N7C8N9C1'169.1°180.0°
C8N9C1'C2'78.6°87.5°
C8N9C1'O4'19.6°33.0°
C8N9C1'H1'162.1°150.0°
H8C8N9C1'3.0°0.0°
N9C1'C2'O4'105.8°121.4°
N9C1'C2'H1'116.0°118.8°
N9C1'O4'H1'123.1°114.5°
N9C1'C2'C3'160.2°102.8°
N9C1'C2'H21'44.3°20.0°
N9C1'C2'H22'73.2°140.0°
N9C1'O4'C4'176.0°128.8°
C2'C1'O4'H1'117.4°121.4°
C1'C2'C3'H21'111.2°123.7°
C1'C2'C3'H22'136.0°117.3°
C1'C2'H21'H22'131.6°121.8°
C2'C1'O4'C4'56.5°4.6°
C1'C2'C3'C4'33.3°33.0°
C1'C2'C3'O3'98.0°152.9°
C1'C2'C3'H3'123.9°85.5°
O4'C1'C2'C3'54.4°18.6°
O4'C1'C2'H21'61.5°141.4°
O4'C1'C2'H22'179.0°98.6°
C1'O4'C4'C5'152.0°148.9°
C1'O4'C4'C3'38.9°26.2°
C1'O4'C4'H4'84.6°92.8°
H1'C1'C2'C3'83.8°138.4°
H1'C1'C2'H21'160.3°98.8°
H1'C1'C2'H22'42.8°21.2°
H1'C1'O4'C4'61.0°116.8°
C3'C2'H21'H22'115.8°120.9°
C2'C3'C4'O4'1.1°37.0°
C2'C3'C4'C5'115.3°157.2°
C2'C3'C4'O3'124.6°119.2°
C2'C3'C4'H3'116.3°117.5°
C2'C3'C4'H4'146.2°80.0°
C2'C3'O3'H3'138.4°122.1°
C2'C3'O3'C186.7°62.1°
H21'C2'C3'C4'78.0°156.6°
H21'C2'C3'O3'150.8°83.4°
H21'C2'C3'H3'12.6°38.2°
H22'C2'C3'C4'169.3°84.3°
H22'C2'C3'O3'38.1°35.7°
H22'C2'C3'H3'100.1°157.3°
O4'C4'C5'C3'109.8°117.8°
O4'C4'C5'H4'147.7°118.0°
O4'C4'C3'H4'147.3°117.0°
O4'C4'C5'O5'13.1°58.3°
O4'C4'C5'H51'161.7°177.8°
O4'C4'C5'H52'71.0°61.3°
O4'C4'C3'O3'125.7°156.2°
O4'C4'C3'H3'115.3°80.5°
C5'C4'C3'H4'98.5°122.8°
C4'C5'O5'H51'141.1°120.1°
C4'C5'O5'H52'112.3°120.1°
C4'C5'H51'H52'129.4°121.3°
C4'C5'O5'PA130.5°180.0°
C5'C4'C3'O3'120.1°83.6°
C5'C4'C3'H3'1.0°39.7°
C3'C4'C5'O5'96.7°59.5°
C3'C4'C5'H51'51.9°60.0°
C3'C4'C5'H52'179.2°179.0°
C4'C3'O3'H3'104.1°124.5°
C4'C3'O3'C1155.8°175.5°
H4'C4'C5'O5'160.9°176.3°
H4'C4'C5'H51'50.6°64.2°
H4'C4'C5'H52'76.7°56.8°
H4'C4'C3'O3'21.6°39.2°
H4'C4'C3'H3'97.4°162.5°
O5'C5'H51'H52'91.5°119.5°
C5'O5'PAO2A12.5°180.0°
C5'O5'PAO1A130.8°54.0°
C5'O5'PAO3A133.8°54.1°
H51'C5'O5'PA10.6°59.9°
H52'C5'O5'PA117.2°59.9°
O5'PAO2AO1A131.4°120.7°
O5'PAO2AO3A116.9°120.7°
O5'PAO1AO3A107.7°109.1°
O5'PAO3APB118.9°66.2°
O5'PAO1AHO354.3°80.3°
O2APAO1AO3A121.6°124.7°
O2APAO3APB2.7°60.0°
O2APAO1AHO376.3°46.0°
O1APAO3APB132.5°175.2°
PAO3APBO2B166.5°60.0°
PAO3APBO1B41.2°173.9°
PAO3APBO3B75.6°66.4°
O3APAO1AHO3162.1°170.6°
O3APBO2BO1B116.8°119.5°
O3APBO2BO3B109.7°119.9°
O3APBO1BO3B112.2°107.4°
O3APBO1BHO1164.3°174.1°
O3APBO3BHO2124.4°174.8°
O2BPBO1BO3B135.1°126.8°
O2BPBO1BHO151.6°48.3°
O2BPBO3BHO216.8°48.8°
O1BPBO3BHO2120.7°77.9°
O3BPBO1BHO183.5°78.5°
C3'O3'C1OC52.2°0.0°
C3'O3'C1CA135.6°179.9°
H3'C3'O3'C151.7°60.0°
O3'C1OCCA171.8°179.9°
O3'C1CACB171.6°30.0°
O3'C1CACE8.5°152.1°
OCC1CACB16.2°150.0°
OCC1CACE179.3°28.0°
C1CACBCE165.1°178.2°
C1CACBCC166.9°178.2°
C1CACBHCB0.9°0.2°
C1CACEND166.4°172.6°
C1CACECE268.1°72.1°
C1CACECE151.2°48.0°
CACBCCHCB168.7°178.0°
CACBCCCC1118.3°106.8°
CACBCCCC2113.4°134.6°
CACBCCND1.7°9.4°
CBCACEND0.9°9.3°
CBCACECE2126.5°106.0°
CBCACECE1114.3°133.9°
CECACBCC1.8°0.0°
CECACBHCB166.0°178.0°
CACENDCC0.2°14.5°
CACENDOR174.0°99.7°
CACENDCE2126.0°117.0°
CACENDCE1119.6°123.7°
CACECE2CE1125.5°123.4°
CACECE2H4CE163.7°156.2°
CACECE2H5CE75.2°83.8°
CACECE2H6CE57.1°36.2°
CACECE1H1CE173.2°170.0°
CACECE1H2CE55.7°70.0°
CACECE1H3CE69.0°50.1°
CBCCCC1CC2126.6°121.0°
CBCCCC1ND108.9°113.9°
CBCCCC2ND105.6°119.1°
CBCCCC1H1CC173.4°30.3°
CBCCCC1H2CC64.2°89.7°
CBCCCC1H3CC55.6°150.4°
CBCCCC2H4CC67.8°14.6°
CBCCCC2H5CC47.3°105.4°
CBCCCC2H6CC179.2°134.6°
CBCCNDOR175.1°99.7°
CBCCNDCE1.2°14.7°
HCBCBCCCC173.0°71.2°
HCBCBCCCC255.3°47.5°
HCBCBCCND167.0°172.7°
CC1CCCC2ND128.6°120.8°
CCCC1H1CCH2CC122.4°121.4°
CCCC1H1CCH3CC122.7°121.4°
CCCC1H2CCH3CC121.5°121.3°
CC1CCCC2H4CC58.0°134.7°
CC1CCCC2H5CC173.1°14.7°
CC1CCCC2H6CC55.0°105.3°
CC1CCNDOR58.8°143.1°
CC1CCNDCE115.0°102.5°
CC2CCCC1H1CC60.1°90.7°
CC2CCCC1H2CC169.2°149.3°
CC2CCCC1H3CC70.9°29.3°
CCCC2H4CCH5CC118.7°121.4°
CCCC2H4CCH6CC109.4°121.4°
CCCC2H5CCH6CC124.0°121.4°
CC2CCNDOR69.7°22.9°
CC2CCNDCE116.5°137.3°
NDCCCC1H1CC64.5°144.3°
NDCCCC1H2CC44.6°24.3°
NDCCCC1H3CC164.5°95.7°
NDCCCC2H4CC173.4°104.5°
NDCCCC2H5CC58.2°135.5°
NDCCCC2H6CC73.6°15.5°
CCNDORCE174.0°113.9°
CCNDORHOR96.3°86.3°
CCNDCECE2125.8°102.5°
CCNDCECE1119.8°138.3°
H1CCCC1H2CCH3CC126.9°117.3°
H4CCCC2H5CCH6CC126.0°117.3°
ORNDCECE248.0°143.2°
ORNDCECE166.4°24.0°
CENDORHOR77.7°27.5°
NDCECE2CE1118.0°123.7°
NDCECE2H4CE47.1°90.9°
NDCECE2H5CE168.3°29.0°
NDCECE2H6CE59.5°149.1°
NDCECE1H1CE63.5°51.2°
NDCECE1H2CE54.0°171.3°
NDCECE1H3CE178.7°68.7°
CECE2H4CEH5CE125.9°121.3°
CECE2H4CEH6CE118.1°121.3°
CECE2H5CEH6CE132.8°121.4°
CE2CECE1H1CE59.7°68.3°
CE2CECE1H2CE177.3°51.8°
CE2CECE1H3CE58.0°171.8°
CE1CECE2H4CE70.8°32.8°
CE1CECE2H5CE50.3°152.7°
CE1CECE2H6CE177.4°87.2°
CECE1H1CEH2CE111.6°121.4°
CECE1H1CEH3CE130.5°121.3°
CECE1H2CEH3CE131.4°121.4°
H4CECE2H5CEH6CE104.4°117.3°
H1CECE1H2CEH3CE110.4°117.3°

222415

PDB entries from 2024-07-10

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